RNA–Protein interactions for RNA: ENST00000410016.5

HOXD3-202, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HOXD3, Length 2,384 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-202ENST00000410016 ARHGAP5Q13017 1502 aa21.65■■□□□ 1.06
HOXD3-202ENST00000410016 PPP4R2Q9NY27 417 aa21.65■■□□□ 1.06
HOXD3-202ENST00000410016 CNGB1Q14028 1251 aaPredicted RBP21.64■■□□□ 1.05
HOXD3-202ENST00000410016 PNISRQ8TF01 805 aaKnown RBP21.63■■□□□ 1.05
HOXD3-202ENST00000410016 ERCC6L2Q5T890 1561 aa21.63■■□□□ 1.05
HOXD3-202ENST00000410016 CCDC144AA2RUR9 1427 aa21.63■■□□□ 1.05
HOXD3-202ENST00000410016 ABCC2Q92887 1545 aa21.63■■□□□ 1.05
HOXD3-202ENST00000410016 PRAG1Q86YV5 1406 aa21.62■■□□□ 1.05
HOXD3-202ENST00000410016 UNC13BO14795 1591 aa21.62■■□□□ 1.05
HOXD3-202ENST00000410016 SMG6Q86US8 1419 aaKnown RBP21.61■■□□□ 1.05
HOXD3-202ENST00000410016 PLEKHH2Q8IVE3 1493 aa21.59■■□□□ 1.05
HOXD3-202ENST00000410016 ANP32EQ9BTT0 268 aa21.58■■□□□ 1.05
HOXD3-202ENST00000410016 PLXNC1O60486 1568 aa21.58■■□□□ 1.04
HOXD3-202ENST00000410016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.58■■□□□ 1.04
HOXD3-202ENST00000410016 NBPF1Q3BBV0 1214 aa21.56■■□□□ 1.04
HOXD3-202ENST00000410016 RGL3Q3MIN7 710 aa21.56■■□□□ 1.04
HOXD3-202ENST00000410016 TMC1Q8TDI8 760 aa21.56■■□□□ 1.04
HOXD3-202ENST00000410016 GPRASP1Q5JY77 1395 aa21.56■■□□□ 1.04
HOXD3-202ENST00000410016 TRPM1Q7Z4N2 1603 aa21.56■■□□□ 1.04
HOXD3-202ENST00000410016 KTN1Q86UP2 1357 aaKnown RBP21.56■■□□□ 1.04
HOXD3-202ENST00000410016 A2MP01023 1474 aa21.55■■□□□ 1.04
HOXD3-202ENST00000410016 PLCH2O75038 1416 aa21.55■■□□□ 1.04
HOXD3-202ENST00000410016 MYO5CQ9NQX4 1742 aa21.55■■□□□ 1.04
HOXD3-202ENST00000410016 IQGAP3Q86VI3 1631 aa21.55■■□□□ 1.04
HOXD3-202ENST00000410016 RALBP1Q15311 655 aa21.54■■□□□ 1.04
HOXD3-202ENST00000410016 NUDCQ9Y266 331 aa21.54■■□□□ 1.04
HOXD3-202ENST00000410016 LRPPRCP42704 1394 aaKnown RBP21.54■■□□□ 1.04
HOXD3-202ENST00000410016 ATP10AO60312 1499 aa21.54■■□□□ 1.04
HOXD3-202ENST00000410016 E9PCH4 1651 aa21.53■■□□□ 1.04
HOXD3-202ENST00000410016 RNF123Q5XPI4 1314 aa21.53■■□□□ 1.04
HOXD3-202ENST00000410016 DUOX2Q9NRD8 1548 aa21.53■■□□□ 1.04
HOXD3-202ENST00000410016 MYBBP1AQ9BQG0 1328 aaKnown RBP21.53■■□□□ 1.04
HOXD3-202ENST00000410016 BRD4O60885 1362 aaPredicted RBP21.52■■□□□ 1.04
HOXD3-202ENST00000410016 MAGI2Q86UL8 1455 aa21.52■■□□□ 1.04
HOXD3-202ENST00000410016 B4GALNT3Q6L9W6 998 aa21.51■■□□□ 1.03
HOXD3-202ENST00000410016 ERBINQ96RT1 1412 aa21.5■■□□□ 1.03
HOXD3-202ENST00000410016 PER1O15534 1290 aaPredicted RBP21.5■■□□□ 1.03
HOXD3-202ENST00000410016 EFCAB2Q5VUJ9 269 aa21.49■■□□□ 1.03
HOXD3-202ENST00000410016 TESK2Q96S53 571 aa21.48■■□□□ 1.03
HOXD3-202ENST00000410016 UHRF1BP1LA0JNW5 1464 aa21.48■■□□□ 1.03
HOXD3-202ENST00000410016 PARD3Q8TEW0 1356 aa21.46■■□□□ 1.03
HOXD3-202ENST00000410016 LAMC1P11047 1609 aa21.46■■□□□ 1.03
HOXD3-202ENST00000410016 PRDM15P57071 1507 aaPredicted RBP21.45■■□□□ 1.03
HOXD3-202ENST00000410016 ZCCHC11Q5TAX3 1644 aaKnown RBP21.45■■□□□ 1.02
HOXD3-202ENST00000410016 TRAPPC8Q9Y2L5 1435 aa21.45■■□□□ 1.02
HOXD3-202ENST00000410016 CLASP1Q7Z460 1538 aa21.44■■□□□ 1.02
HOXD3-202ENST00000410016 FANCIQ9NVI1 1328 aa21.44■■□□□ 1.02
HOXD3-202ENST00000410016 ABCC1P33527 1531 aa21.44■■□□□ 1.02
HOXD3-202ENST00000410016 SENP3-EIF4A1A0A087X0R7 540 aa21.44■■□□□ 1.02
HOXD3-202ENST00000410016 COL17A1Q9UMD9 1497 aaPredicted RBP21.43■■□□□ 1.02
HOXD3-202ENST00000410016 DISP3Q9P2K9 1392 aa21.42■■□□□ 1.02
HOXD3-202ENST00000410016 NLRP13Q86W25 1043 aa21.42■■□□□ 1.02
HOXD3-202ENST00000410016 MSH5O43196 834 aa21.41■■□□□ 1.02
HOXD3-202ENST00000410016 WASHC2CQ9Y4E1 1318 aa21.4■■□□□ 1.02
HOXD3-202ENST00000410016 EIF2AK4Q9P2K8 1649 aaKnown RBP21.39■■□□□ 1.01
HOXD3-202ENST00000410016 RTEL1-TNFRSF6BF6WH68 1400 aa21.37■■□□□ 1.01
HOXD3-202ENST00000410016 AFAP1Q8N556 730 aa21.37■■□□□ 1.01
HOXD3-202ENST00000410016 SPAG9O60271 1321 aaKnown RBP21.36■■□□□ 1.01
HOXD3-202ENST00000410016 PANK3Q9H999 370 aa21.34■■□□□ 1.01
HOXD3-202ENST00000410016 ARAP3Q8WWN8 1544 aa21.34■■□□□ 1.01
HOXD3-202ENST00000410016 TMF1P82094 1093 aa21.34■■□□□ 1.01
HOXD3-202ENST00000410016 RNF17Q9BXT8 1623 aaKnown RBP21.31■■□□□ 1
HOXD3-202ENST00000410016 PTPRTO14522 1441 aa21.31■■□□□ 1
HOXD3-202ENST00000410016 ZFYVE16Q7Z3T8 1539 aa21.31■■□□□ 1
HOXD3-202ENST00000410016 CC2D1BQ5T0F9 858 aaKnown RBP21.3■■□□□ 1
HOXD3-202ENST00000410016 TRPM2O94759 1503 aa21.28■■□□□ 1
HOXD3-202ENST00000410016 CCDC136Q96JN2 1154 aa21.28■■□□□ 1
HOXD3-202ENST00000410016 INSRP06213 1382 aa21.28■■□□□ 1
HOXD3-202ENST00000410016 PDE3BQ13370 1112 aa21.28■■□□□ 1
HOXD3-202ENST00000410016 STAC3Q96MF2 364 aa21.26■□□□□ 0.99
HOXD3-202ENST00000410016 MADDQ8WXG6 1647 aa21.26■□□□□ 0.99
HOXD3-202ENST00000410016 DEPDC5O75140 1603 aa21.25■□□□□ 0.99
HOXD3-202ENST00000410016 WDR7Q9Y4E6 1490 aa21.25■□□□□ 0.99
HOXD3-202ENST00000410016 ZMYM4Q5VZL5 1548 aa21.24■□□□□ 0.99
HOXD3-202ENST00000410016 RRP1P56182 461 aaKnown RBP21.24■□□□□ 0.99
HOXD3-202ENST00000410016 SALL2Q9Y467 1007 aaPredicted RBP21.24■□□□□ 0.99
HOXD3-202ENST00000410016 RCAN3Q9UKA8 241 aa21.23■□□□□ 0.99
HOXD3-202ENST00000410016 SCAPERQ9BY12 1400 aa21.23■□□□□ 0.99
HOXD3-202ENST00000410016 BLMP54132 1417 aaPredicted RBP21.22■□□□□ 0.99
HOXD3-202ENST00000410016 FANCAO15360 1455 aa21.22■□□□□ 0.99
HOXD3-202ENST00000410016 VWDEQ8N2E2 1590 aa21.21■□□□□ 0.99
HOXD3-202ENST00000410016 IQGAP1P46940 1657 aa21.21■□□□□ 0.99
HOXD3-202ENST00000410016 CLTCL1P53675 1640 aa21.21■□□□□ 0.99
HOXD3-202ENST00000410016 CDCA7LQ96GN5 454 aa21.21■□□□□ 0.99
HOXD3-202ENST00000410016 SPHKAPQ2M3C7 1700 aa21.2■□□□□ 0.98
HOXD3-202ENST00000410016 ABCA9Q8IUA7 1624 aa21.2■□□□□ 0.98
HOXD3-202ENST00000410016 ATP7AQ04656 1500 aa21.19■□□□□ 0.98
HOXD3-202ENST00000410016 SCAF11Q99590 1463 aaKnown RBP21.19■□□□□ 0.98
HOXD3-202ENST00000410016 CEP152O94986 1710 aa21.19■□□□□ 0.98
HOXD3-202ENST00000410016 INO80Q9ULG1 1556 aaPredicted RBP21.19■□□□□ 0.98
HOXD3-202ENST00000410016 TET3O43151 1660 aa21.19■□□□□ 0.98
HOXD3-202ENST00000410016 KIF3BO15066 747 aa21.17■□□□□ 0.98
HOXD3-202ENST00000410016 AMER1Q5JTC6 1135 aaPredicted RBP21.17■□□□□ 0.98
HOXD3-202ENST00000410016 KANK1Q14678 1352 aa21.17■□□□□ 0.98
HOXD3-202ENST00000410016 EXOC6Q8TAG9 804 aa21.15■□□□□ 0.98
HOXD3-202ENST00000410016 KNSTRNQ9Y448 316 aa21.15■□□□□ 0.98
HOXD3-202ENST00000410016 CDCA8Q53HL2 280 aa21.15■□□□□ 0.98
HOXD3-202ENST00000410016 BCL11AQ9H165 835 aa21.14■□□□□ 0.97
HOXD3-202ENST00000410016 ADGRL1O94910 1474 aa21.14■□□□□ 0.97
HOXD3-202ENST00000410016 ADAMTS8Q9UP79 889 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms