RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 MS4A1P11836 297 aa10.54□□□□□ -0.72
SCN9A-203ENST00000409672 TPD52L1Q16890 204 aaPredicted RBP10.54□□□□□ -0.72
SCN9A-203ENST00000409672 WASHC2CQ9Y4E1 1318 aa10.54□□□□□ -0.72
SCN9A-203ENST00000409672 APPP05067 770 aa10.54□□□□□ -0.72
SCN9A-203ENST00000409672 C1orf141Q5JVX7 400 aa10.54□□□□□ -0.72
SCN9A-203ENST00000409672 SMC4Q9NTJ3 1288 aa10.53□□□□□ -0.72
SCN9A-203ENST00000409672 PLIN1O60240 522 aa10.53□□□□□ -0.72
SCN9A-203ENST00000409672 NOL10Q9BSC4 688 aaKnown RBP10.53□□□□□ -0.72
SCN9A-203ENST00000409672 BCL11BQ9C0K0 894 aaPredicted RBP10.53□□□□□ -0.72
SCN9A-203ENST00000409672 ROCK2O75116 1388 aaKnown RBP10.52□□□□□ -0.72
SCN9A-203ENST00000409672 PSME1Q06323 249 aa10.52□□□□□ -0.73
SCN9A-203ENST00000409672 PKD2Q13563 968 aa10.52□□□□□ -0.73
SCN9A-203ENST00000409672 BAZ1BQ9UIG0 1483 aaKnown RBP10.51□□□□□ -0.73
SCN9A-203ENST00000409672 SF3A1Q15459 793 aaKnown RBP10.51□□□□□ -0.73
SCN9A-203ENST00000409672 CCAR1Q8IX12 1150 aaKnown RBP10.51□□□□□ -0.73
SCN9A-203ENST00000409672 TCERG1O14776 1098 aaKnown RBP10.5□□□□□ -0.73
SCN9A-203ENST00000409672 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.5□□□□□ -0.73
SCN9A-203ENST00000409672 PCMTD1Q96MG8 357 aaPredicted RBP10.5□□□□□ -0.73
SCN9A-203ENST00000409672 AKAP17AQ02040 695 aaKnown RBP10.49□□□□□ -0.73
SCN9A-203ENST00000409672 MCTP1Q6DN14 999 aa10.49□□□□□ -0.73
SCN9A-203ENST00000409672 CCAR2Q8N163 923 aaKnown RBP10.49□□□□□ -0.73
SCN9A-203ENST00000409672 TPM4P67936 248 aa10.49□□□□□ -0.73
SCN9A-203ENST00000409672 BCL2L13Q9BXK5 485 aa10.49□□□□□ -0.73
SCN9A-203ENST00000409672 CCDC27Q2M243 656 aa10.49□□□□□ -0.73
SCN9A-203ENST00000409672 VSIG10Q8N0Z9 540 aa10.49□□□□□ -0.73
SCN9A-203ENST00000409672 IPO8O15397 1037 aaKnown RBP10.49□□□□□ -0.73
SCN9A-203ENST00000409672 RBM33Q96EV2 1170 aaKnown RBP10.49□□□□□ -0.73
SCN9A-203ENST00000409672 IKQ13123 557 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-203ENST00000409672 H3BQV1 296 aa10.48□□□□□ -0.73
SCN9A-203ENST00000409672 IFFO2Q5TF58 517 aa10.48□□□□□ -0.73
SCN9A-203ENST00000409672 SF3B2Q13435 895 aaKnown RBP10.48□□□□□ -0.73
SCN9A-203ENST00000409672 WDR70Q9NW82 654 aa10.48□□□□□ -0.73
SCN9A-203ENST00000409672 STK11IPQ8N1F8 1099 aa10.48□□□□□ -0.73
SCN9A-203ENST00000409672 NOP58Q9Y2X3 529 aaKnown RBP10.48□□□□□ -0.73
SCN9A-203ENST00000409672 TTC5Q8N0Z6 440 aa10.48□□□□□ -0.73
SCN9A-203ENST00000409672 CCDC43Q96MW1 224 aaKnown RBP10.48□□□□□ -0.73
SCN9A-203ENST00000409672 AMOTL1Q8IY63 956 aa10.47□□□□□ -0.73
SCN9A-203ENST00000409672 TMEM132AQ24JP5 1023 aa10.47□□□□□ -0.73
SCN9A-203ENST00000409672 PAF1Q8N7H5 531 aa10.47□□□□□ -0.73
SCN9A-203ENST00000409672 AIMP1Q12904 312 aaKnown RBP10.46□□□□□ -0.73
SCN9A-203ENST00000409672 CCDC180Q9P1Z9 1646 aa10.46□□□□□ -0.74
SCN9A-203ENST00000409672 STRN4Q9NRL3 753 aa10.45□□□□□ -0.74
SCN9A-203ENST00000409672 RB1CC1Q8TDY2 1594 aa10.45□□□□□ -0.74
SCN9A-203ENST00000409672 FAM184AQ8NB25 1140 aa10.45□□□□□ -0.74
SCN9A-203ENST00000409672 CHMP4CQ96CF2 233 aa10.45□□□□□ -0.74
SCN9A-203ENST00000409672 MINK1Q8N4C8 1332 aaPredicted RBP10.44□□□□□ -0.74
SCN9A-203ENST00000409672 MYCNP04198 464 aaPredicted RBP10.44□□□□□ -0.74
SCN9A-203ENST00000409672 CEP162Q5TB80 1403 aa10.44□□□□□ -0.74
SCN9A-203ENST00000409672 ATF3P18847 181 aa10.44□□□□□ -0.74
SCN9A-203ENST00000409672 PAXIP1Q6ZW49 1069 aaPredicted RBP10.44□□□□□ -0.74
SCN9A-203ENST00000409672 TEFQ10587 303 aa10.44□□□□□ -0.74
SCN9A-203ENST00000409672 PPP4R2Q9NY27 417 aa10.44□□□□□ -0.74
SCN9A-203ENST00000409672 ZFYVE27Q5T4F4 411 aa10.43□□□□□ -0.74
SCN9A-203ENST00000409672 C9orf78Q9NZ63 289 aaPredicted RBP10.43□□□□□ -0.74
SCN9A-203ENST00000409672 KIF27Q86VH2 1401 aa10.43□□□□□ -0.74
SCN9A-203ENST00000409672 HSPA5P11021 654 aaKnown RBP10.43□□□□□ -0.74
SCN9A-203ENST00000409672 CALD1Q05682 793 aaKnown RBP10.43□□□□□ -0.74
SCN9A-203ENST00000409672 KIF16BQ96L93 1317 aa10.43□□□□□ -0.74
SCN9A-203ENST00000409672 CHMP4BP1P59074 171 aa10.43□□□□□ -0.74
SCN9A-203ENST00000409672 GOLGA3Q08378 1498 aa10.43□□□□□ -0.74
SCN9A-203ENST00000409672 PPM1FP49593 454 aaPredicted RBP10.43□□□□□ -0.74
SCN9A-203ENST00000409672 TERF2IPQ9NYB0 399 aa10.42□□□□□ -0.74
SCN9A-203ENST00000409672 ATP2B2Q01814 1243 aa10.42□□□□□ -0.74
SCN9A-203ENST00000409672 HTATSF1O43719 755 aaKnown RBP10.42□□□□□ -0.74
SCN9A-203ENST00000409672 GOLGA6L1Q8N7Z2 621 aa10.42□□□□□ -0.74
SCN9A-203ENST00000409672 KTN1Q86UP2 1357 aaKnown RBP10.42□□□□□ -0.74
SCN9A-203ENST00000409672 NFXL1Q6ZNB6 911 aa10.42□□□□□ -0.74
SCN9A-203ENST00000409672 TPM3P06753 285 aa10.42□□□□□ -0.74
SCN9A-203ENST00000409672 SYNE3Q6ZMZ3 975 aa10.41□□□□□ -0.74
SCN9A-203ENST00000409672 CFAP44Q96MT7 982 aa10.41□□□□□ -0.74
SCN9A-203ENST00000409672 NUP155O75694 1391 aa10.41□□□□□ -0.74
SCN9A-203ENST00000409672 CCDC34Q96HJ3 373 aa10.4□□□□□ -0.74
SCN9A-203ENST00000409672 TSR1Q2NL82 804 aaKnown RBP10.4□□□□□ -0.74
SCN9A-203ENST00000409672 ANKRD45Q5TZF3 282 aa10.4□□□□□ -0.74
SCN9A-203ENST00000409672 PRDM2Q13029 1718 aa10.39□□□□□ -0.75
SCN9A-203ENST00000409672 CUX2O14529 1486 aa10.39□□□□□ -0.75
SCN9A-203ENST00000409672 COG3Q96JB2 828 aa10.39□□□□□ -0.75
SCN9A-203ENST00000409672 SKIDA1Q1XH10 827 aa10.39□□□□□ -0.75
SCN9A-203ENST00000409672 HMMRO75330 724 aa10.38□□□□□ -0.75
SCN9A-203ENST00000409672 RBM5P52756 815 aaKnown RBP eCLIP10.38□□□□□ -0.75
SCN9A-203ENST00000409672 RWDD1Q9H446 243 aaPredicted RBP10.38□□□□□ -0.75
SCN9A-203ENST00000409672 R3HCC1Q9Y3T6 440 aaKnown RBP10.38□□□□□ -0.75
SCN9A-203ENST00000409672 RBM42Q9BTD8 480 aaKnown RBP10.38□□□□□ -0.75
SCN9A-203ENST00000409672 GBP4Q96PP9 640 aa10.38□□□□□ -0.75
SCN9A-203ENST00000409672 NAP1L1P55209 391 aaKnown RBP10.37□□□□□ -0.75
SCN9A-203ENST00000409672 RCAN3Q9UKA8 241 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 ODF2Q5BJF6 829 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 EFCAB2Q5VUJ9 269 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 NEUROD6Q96NK8 337 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 TPM2P07951 284 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 ZNF592Q92610 1267 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 FAM69CQ0P6D2 419 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 NEXNQ0ZGT2 675 aa10.37□□□□□ -0.75
SCN9A-203ENST00000409672 WRNQ14191 1432 aaPredicted RBP eCLIP10.36□□□□□ -0.75
SCN9A-203ENST00000409672 TNNT3P45378 269 aaPredicted RBP10.36□□□□□ -0.75
SCN9A-203ENST00000409672 TRIM29Q14134 588 aa10.36□□□□□ -0.75
SCN9A-203ENST00000409672 CT47A1Q5JQC4 288 aaPredicted RBP10.36□□□□□ -0.75
SCN9A-203ENST00000409672 HMOX1P09601 288 aa10.36□□□□□ -0.75
SCN9A-203ENST00000409672 GRM1Q13255 1194 aa10.35□□□□□ -0.75
SCN9A-203ENST00000409672 ANO2Q9NQ90 1003 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms