RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 FANCAO15360 1455 aa15.14■□□□□ 0.01
SNX13-202ENST00000409604 CAMSAP2Q08AD1 1489 aa15.14■□□□□ 0.01
SNX13-202ENST00000409604 HDGFL2Q7Z4V5 671 aaPredicted RBP15.14■□□□□ 0.01
SNX13-202ENST00000409604 CCDC146Q8IYE0 955 aa15.13■□□□□ 0.01
SNX13-202ENST00000409604 DISP1Q96F81 1524 aa15.13■□□□□ 0.01
SNX13-202ENST00000409604 USP47Q96K76 1375 aa15.13■□□□□ 0.01
SNX13-202ENST00000409604 TARBP1Q13395 1621 aaKnown RBP15.12■□□□□ 0.01
SNX13-202ENST00000409604 U2AF1L5P0DN76 240 aaPredicted RBP15.12■□□□□ 0.01
SNX13-202ENST00000409604 U2AF1Q01081 240 aaKnown RBP eCLIP15.12■□□□□ 0.01
SNX13-202ENST00000409604 SUPT16HQ9Y5B9 1047 aaKnown RBP15.12■□□□□ 0.01
SNX13-202ENST00000409604 NUP160Q12769 1436 aa15.12■□□□□ 0.01
SNX13-202ENST00000409604 GPATCH8Q9UKJ3 1502 aaKnown RBP15.12■□□□□ 0.01
SNX13-202ENST00000409604 PLEKHH2Q8IVE3 1493 aa15.11■□□□□ 0.01
SNX13-202ENST00000409604 SUPT6HQ7KZ85 1726 aaKnown RBP15.11■□□□□ 0.01
SNX13-202ENST00000409604 IDI1Q13907 227 aa15.11■□□□□ 0.01
SNX13-202ENST00000409604 PMFBP1Q8TBY8 1022 aa15.11■□□□□ 0.01
SNX13-202ENST00000409604 CSB-PGBD3P0DP91 1061 aa15.1■□□□□ 0.01
SNX13-202ENST00000409604 ZBTB47Q9UFB7 747 aaPredicted RBP15.1■□□□□ 0.01
SNX13-202ENST00000409604 MAPK8IP3Q9UPT6 1336 aa15.09■□□□□ 0.01
SNX13-202ENST00000409604 CEP170Q5SW79 1584 aa15.09■□□□□ 0.01
SNX13-202ENST00000409604 HFM1A2PYH4 1435 aa15.09■□□□□ 0.01
SNX13-202ENST00000409604 RRP7AQ9Y3A4 280 aaKnown RBP15.08■□□□□ 0.01
SNX13-202ENST00000409604 CCDC9Q9Y3X0 531 aaKnown RBP15.08■□□□□ 0.01
SNX13-202ENST00000409604 TRAPPC8Q9Y2L5 1435 aa15.08■□□□□ 0
SNX13-202ENST00000409604 PRAM1Q96QH2 718 aa15.08■□□□□ 0
SNX13-202ENST00000409604 ABCA5Q8WWZ7 1642 aa15.07■□□□□ 0
SNX13-202ENST00000409604 FRAT1Q92837 279 aaPredicted RBP15.07■□□□□ 0
SNX13-202ENST00000409604 XPCQ01831 940 aaPredicted RBP15.07■□□□□ 0
SNX13-202ENST00000409604 AKNAQ7Z591 1439 aa15.07■□□□□ 0
SNX13-202ENST00000409604 NUDCQ9Y266 331 aa15.07■□□□□ 0
SNX13-202ENST00000409604 NCOA1Q15788 1441 aa15.07■□□□□ 0
SNX13-202ENST00000409604 DAXXQ9UER7 740 aaPredicted RBP15.06■□□□□ 0
SNX13-202ENST00000409604 KIAA0556O60303 1618 aa15.06■□□□□ 0
SNX13-202ENST00000409604 CCDC141Q6ZP82 1450 aa15.06■□□□□ 0
SNX13-202ENST00000409604 WAPLQ7Z5K2 1190 aa15.06■□□□□ 0
SNX13-202ENST00000409604 GGNBP2Q9H3C7 697 aa15.06■□□□□ 0
SNX13-202ENST00000409604 RAPGEF6Q8TEU7 1601 aa15.05■□□□□ -0
SNX13-202ENST00000409604 PBRM1Q86U86 1689 aa15.05■□□□□ -0
SNX13-202ENST00000409604 SLC12A5Q9H2X9 1139 aa15.04■□□□□ -0
SNX13-202ENST00000409604 TERF2IPQ9NYB0 399 aa15.04■□□□□ -0
SNX13-202ENST00000409604 HSPA2P54652 639 aa15.03■□□□□ -0
SNX13-202ENST00000409604 NPM2Q86SE8 214 aaKnown RBP15.03■□□□□ -0
SNX13-202ENST00000409604 PTPN23Q9H3S7 1636 aa15.03■□□□□ -0
SNX13-202ENST00000409604 CENPJQ9HC77 1338 aaPredicted RBP15.03■□□□□ -0
SNX13-202ENST00000409604 KIF14Q15058 1648 aa15.03■□□□□ -0
SNX13-202ENST00000409604 UGGT2Q9NYU1 1516 aa15.03■□□□□ -0
SNX13-202ENST00000409604 ERCC6L2Q5T890 1561 aa15.03■□□□□ -0
SNX13-202ENST00000409604 PROSER2Q86WR7 435 aaPredicted RBP15.02□□□□□ -0.01
SNX13-202ENST00000409604 KIF7Q2M1P5 1343 aa15.02□□□□□ -0.01
SNX13-202ENST00000409604 KTN1Q86UP2 1357 aaKnown RBP15.01□□□□□ -0.01
SNX13-202ENST00000409604 AMPHP49418 695 aa15.01□□□□□ -0.01
SNX13-202ENST00000409604 DENND4BO75064 1496 aaPredicted RBP15.01□□□□□ -0.01
SNX13-202ENST00000409604 KIAA1107Q9UPP5 1409 aa15.01□□□□□ -0.01
SNX13-202ENST00000409604 CCDC136Q96JN2 1154 aa15.01□□□□□ -0.01
SNX13-202ENST00000409604 ADGRF5Q8IZF2 1346 aa15.01□□□□□ -0.01
SNX13-202ENST00000409604 ZNF330Q9Y3S2 320 aaPredicted RBP15□□□□□ -0.01
SNX13-202ENST00000409604 PSME1Q06323 249 aa15□□□□□ -0.01
SNX13-202ENST00000409604 THEMISQ8N1K5 641 aaPredicted RBP14.99□□□□□ -0.01
SNX13-202ENST00000409604 WASHC2AQ641Q2 1341 aa14.99□□□□□ -0.01
SNX13-202ENST00000409604 EVC2Q86UK5 1308 aa14.99□□□□□ -0.01
SNX13-202ENST00000409604 WDR7Q9Y4E6 1490 aa14.99□□□□□ -0.01
SNX13-202ENST00000409604 EIF3AQ14152 1382 aaKnown RBP14.99□□□□□ -0.01
SNX13-202ENST00000409604 PLCH2O75038 1416 aa14.99□□□□□ -0.01
SNX13-202ENST00000409604 CTTNBP2Q8WZ74 1663 aa14.98□□□□□ -0.01
SNX13-202ENST00000409604 USP35Q9P2H5 1018 aa14.98□□□□□ -0.01
SNX13-202ENST00000409604 ESCO1Q5FWF5 840 aa14.98□□□□□ -0.01
SNX13-202ENST00000409604 ELL2O00472 640 aaPredicted RBP14.98□□□□□ -0.01
SNX13-202ENST00000409604 SYCP2Q9BX26 1530 aa14.98□□□□□ -0.01
SNX13-202ENST00000409604 ERBINQ96RT1 1412 aa14.97□□□□□ -0.01
SNX13-202ENST00000409604 SLC52A1Q9NWF4 448 aa14.97□□□□□ -0.01
SNX13-202ENST00000409604 C11orf95C9JLR9 678 aaPredicted RBP14.96□□□□□ -0.02
SNX13-202ENST00000409604 PIP4K2BP78356 416 aa14.95□□□□□ -0.02
SNX13-202ENST00000409604 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.95□□□□□ -0.02
SNX13-202ENST00000409604 CABP1Q9NZU7 370 aa14.95□□□□□ -0.02
SNX13-202ENST00000409604 PRKRIP1Q9H875 184 aaPredicted RBP14.95□□□□□ -0.02
SNX13-202ENST00000409604 ABCC2Q92887 1545 aa14.95□□□□□ -0.02
SNX13-202ENST00000409604 ANKLE2Q86XL3 938 aa14.94□□□□□ -0.02
SNX13-202ENST00000409604 ATF3P18847 181 aa14.94□□□□□ -0.02
SNX13-202ENST00000409604 HMOX1P09601 288 aa14.92□□□□□ -0.02
SNX13-202ENST00000409604 NLRP6P59044 892 aa14.92□□□□□ -0.02
SNX13-202ENST00000409604 TCERG1O14776 1098 aaKnown RBP14.92□□□□□ -0.02
SNX13-202ENST00000409604 COG3Q96JB2 828 aa14.91□□□□□ -0.02
SNX13-202ENST00000409604 DHX29Q7Z478 1369 aaKnown RBP14.91□□□□□ -0.02
SNX13-202ENST00000409604 ANKRD30BQ9BXX2 1392 aa14.91□□□□□ -0.02
SNX13-202ENST00000409604 CDK19Q9BWU1 502 aa14.9□□□□□ -0.02
SNX13-202ENST00000409604 MAGI3Q5TCQ9 1506 aa14.9□□□□□ -0.02
SNX13-202ENST00000409604 BCL2L13Q9BXK5 485 aa14.9□□□□□ -0.02
SNX13-202ENST00000409604 ROCK1Q13464 1354 aa14.9□□□□□ -0.02
SNX13-202ENST00000409604 NLRP13Q86W25 1043 aa14.89□□□□□ -0.03
SNX13-202ENST00000409604 CFAP65Q6ZU64 1925 aaKnown RBP14.89□□□□□ -0.03
SNX13-202ENST00000409604 FBLN1P23142 703 aa14.89□□□□□ -0.03
SNX13-202ENST00000409604 CCDC184Q52MB2 194 aa14.89□□□□□ -0.03
SNX13-202ENST00000409604 CHD1O14646 1710 aa14.88□□□□□ -0.03
SNX13-202ENST00000409604 B4GALNT3Q6L9W6 998 aa14.88□□□□□ -0.03
SNX13-202ENST00000409604 RTF1Q92541 710 aaKnown RBP14.88□□□□□ -0.03
SNX13-202ENST00000409604 CLUAP1Q96AJ1 413 aa14.88□□□□□ -0.03
SNX13-202ENST00000409604 WDR97A6NE52 1622 aa14.88□□□□□ -0.03
SNX13-202ENST00000409604 CCDC7Q96M83 1385 aa14.88□□□□□ -0.03
SNX13-202ENST00000409604 RALBP1Q15311 655 aa14.87□□□□□ -0.03
SNX13-202ENST00000409604 ABTB2Q8N961 1025 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms