RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MSH5O43196 834 aa17.95■□□□□ 0.46
VPS54-203ENST00000409558 SYCP2Q9BX26 1530 aa17.95■□□□□ 0.46
VPS54-203ENST00000409558 ABCC10Q5T3U5 1492 aa17.93■□□□□ 0.46
VPS54-203ENST00000409558 SAFB2Q14151 953 aaKnown RBP eCLIP17.92■□□□□ 0.461e-7■■■■□ 23.5
VPS54-203ENST00000409558 CCDC141Q6ZP82 1450 aa17.92■□□□□ 0.46
VPS54-203ENST00000409558 CCDC146Q8IYE0 955 aa17.91■□□□□ 0.46
VPS54-203ENST00000409558 TMF1P82094 1093 aa17.91■□□□□ 0.46
VPS54-203ENST00000409558 EXOC6Q8TAG9 804 aa17.91■□□□□ 0.46
VPS54-203ENST00000409558 MYBBP1AQ9BQG0 1328 aaKnown RBP17.91■□□□□ 0.46
VPS54-203ENST00000409558 NBR1Q14596 966 aa17.9■□□□□ 0.46
VPS54-203ENST00000409558 BCORL1Q5H9F3 1711 aa17.9■□□□□ 0.46
VPS54-203ENST00000409558 DISP3Q9P2K9 1392 aa17.9■□□□□ 0.46
VPS54-203ENST00000409558 KNSTRNQ9Y448 316 aa17.89■□□□□ 0.46
VPS54-203ENST00000409558 MBD5Q9P267 1494 aa17.89■□□□□ 0.46
VPS54-203ENST00000409558 KTN1Q86UP2 1357 aaKnown RBP17.89■□□□□ 0.45
VPS54-203ENST00000409558 ITSN2Q9NZM3 1697 aa17.89■□□□□ 0.45
VPS54-203ENST00000409558 NEUROD2Q15784 382 aa17.89■□□□□ 0.45
VPS54-203ENST00000409558 RSPH4AQ5TD94 716 aa17.88■□□□□ 0.45
VPS54-203ENST00000409558 ABCA8O94911 1581 aa17.88■□□□□ 0.45
VPS54-203ENST00000409558 CFAP70Q5T0N1 1121 aa17.87■□□□□ 0.45
VPS54-203ENST00000409558 CDC42BPAQ5VT25 1732 aa17.87■□□□□ 0.45
VPS54-203ENST00000409558 NLRP13Q86W25 1043 aa17.87■□□□□ 0.45
VPS54-203ENST00000409558 TRAPPC8Q9Y2L5 1435 aa17.86■□□□□ 0.45
VPS54-203ENST00000409558 ADGRL2O95490 1459 aa17.86■□□□□ 0.45
VPS54-203ENST00000409558 FAM135AQ9P2D6 1515 aa17.85■□□□□ 0.45
VPS54-203ENST00000409558 RALBP1Q15311 655 aa17.85■□□□□ 0.45
VPS54-203ENST00000409558 RCAN3Q9UKA8 241 aa17.85■□□□□ 0.45
VPS54-203ENST00000409558 WDR43Q15061 677 aaKnown RBP eCLIP17.84■□□□□ 0.453e-6■■■■■ 29.9
VPS54-203ENST00000409558 NPM1P06748 294 aaKnown RBP eCLIP17.83■□□□□ 0.45
VPS54-203ENST00000409558 SCAPERQ9BY12 1400 aa17.83■□□□□ 0.44
VPS54-203ENST00000409558 ADAMTS8Q9UP79 889 aa17.83■□□□□ 0.44
VPS54-203ENST00000409558 TRAK1Q9UPV9 953 aa17.83■□□□□ 0.44
VPS54-203ENST00000409558 SAMD9LQ8IVG5 1584 aa17.82■□□□□ 0.44
VPS54-203ENST00000409558 TMEM132EQ6IEE7 984 aa17.82■□□□□ 0.44
VPS54-203ENST00000409558 TESK2Q96S53 571 aa17.82■□□□□ 0.44
VPS54-203ENST00000409558 TTC37Q6PGP7 1564 aa17.81■□□□□ 0.44
VPS54-203ENST00000409558 RALGAPBQ86X10 1494 aa17.79■□□□□ 0.44
VPS54-203ENST00000409558 ARHGEF12Q9NZN5 1544 aa17.79■□□□□ 0.44
VPS54-203ENST00000409558 MYT1Q01538 1121 aa17.79■□□□□ 0.44
VPS54-203ENST00000409558 PLA2R1Q13018 1463 aa17.79■□□□□ 0.44
VPS54-203ENST00000409558 PRAG1Q86YV5 1406 aa17.78■□□□□ 0.44
VPS54-203ENST00000409558 PER1O15534 1290 aaPredicted RBP17.78■□□□□ 0.44
VPS54-203ENST00000409558 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.78■□□□□ 0.445e-8■■■■■ 28.6
VPS54-203ENST00000409558 ADGBQ8N7X0 1667 aa17.77■□□□□ 0.44
VPS54-203ENST00000409558 RRP1P56182 461 aaKnown RBP17.76■□□□□ 0.43
VPS54-203ENST00000409558 STK26Q9P289 416 aa17.76■□□□□ 0.43
VPS54-203ENST00000409558 A2MP01023 1474 aa17.76■□□□□ 0.43
VPS54-203ENST00000409558 KDM5CP41229 1560 aa17.75■□□□□ 0.43
VPS54-203ENST00000409558 CHD1O14646 1710 aa17.75■□□□□ 0.43
VPS54-203ENST00000409558 RAPGEF3O95398 923 aa17.75■□□□□ 0.43
VPS54-203ENST00000409558 RRP7AQ9Y3A4 280 aaKnown RBP17.74■□□□□ 0.43
VPS54-203ENST00000409558 C20orf194Q5TEA3 1177 aa17.74■□□□□ 0.43
VPS54-203ENST00000409558 ADGRF5Q8IZF2 1346 aa17.74■□□□□ 0.43
VPS54-203ENST00000409558 ERBINQ96RT1 1412 aa17.73■□□□□ 0.43
VPS54-203ENST00000409558 PLPPR3Q6T4P5 718 aa17.73■□□□□ 0.43
VPS54-203ENST00000409558 SMG6Q86US8 1419 aaKnown RBP17.73■□□□□ 0.43
VPS54-203ENST00000409558 PAK3O75914 559 aaPredicted RBP17.73■□□□□ 0.43
VPS54-203ENST00000409558 ARID4BQ4LE39 1312 aaPredicted RBP17.72■□□□□ 0.43
VPS54-203ENST00000409558 BRD4O60885 1362 aaPredicted RBP17.72■□□□□ 0.43
VPS54-203ENST00000409558 CRBNQ96SW2 442 aa17.72■□□□□ 0.43
VPS54-203ENST00000409558 SHANK2Q9UPX8 1470 aa17.72■□□□□ 0.43
VPS54-203ENST00000409558 UHRF1BP1Q6BDS2 1440 aa17.71■□□□□ 0.43
VPS54-203ENST00000409558 CDC42BPBQ9Y5S2 1711 aa17.71■□□□□ 0.43
VPS54-203ENST00000409558 APAF1O14727 1248 aa17.71■□□□□ 0.42
VPS54-203ENST00000409558 PPP2R1AP30153 589 aa17.7■□□□□ 0.42
VPS54-203ENST00000409558 BCL11AQ9H165 835 aa17.69■□□□□ 0.42
VPS54-203ENST00000409558 CROCC2H7BZ55 1655 aa17.69■□□□□ 0.42
VPS54-203ENST00000409558 PLCH2O75038 1416 aa17.69■□□□□ 0.42
VPS54-203ENST00000409558 ADCY10Q96PN6 1610 aa17.69■□□□□ 0.42
VPS54-203ENST00000409558 ANP32AP39687 249 aaKnown RBP17.68■□□□□ 0.42
VPS54-203ENST00000409558 MLECQ14165 292 aa17.68■□□□□ 0.42
VPS54-203ENST00000409558 KANK1Q14678 1352 aa17.68■□□□□ 0.42
VPS54-203ENST00000409558 RGS3P49796 1198 aa17.67■□□□□ 0.42
VPS54-203ENST00000409558 ERICH6BQ5W0A0 696 aa17.67■□□□□ 0.42
VPS54-203ENST00000409558 SLC12A5Q9H2X9 1139 aa17.67■□□□□ 0.42
VPS54-203ENST00000409558 WASHC2CQ9Y4E1 1318 aa17.66■□□□□ 0.42
VPS54-203ENST00000409558 CFAP65Q6ZU64 1925 aaKnown RBP17.65■□□□□ 0.42
VPS54-203ENST00000409558 ABCC2Q92887 1545 aa17.65■□□□□ 0.42
VPS54-203ENST00000409558 LAS1LQ9Y4W2 734 aaKnown RBP17.65■□□□□ 0.42
VPS54-203ENST00000409558 CANXP27824 592 aaKnown RBP17.64■□□□□ 0.42
VPS54-203ENST00000409558 CYB5RLQ6IPT4 315 aa17.64■□□□□ 0.42
VPS54-203ENST00000409558 FRAT1Q92837 279 aaPredicted RBP17.64■□□□□ 0.41
VPS54-203ENST00000409558 BCL2L13Q9BXK5 485 aa17.64■□□□□ 0.41
VPS54-203ENST00000409558 PARD3Q8TEW0 1356 aa17.62■□□□□ 0.41
VPS54-203ENST00000409558 KDM5DQ9BY66 1539 aa17.62■□□□□ 0.41
VPS54-203ENST00000409558 UGGT1Q9NYU2 1555 aa17.62■□□□□ 0.41
VPS54-203ENST00000409558 PREX2Q70Z35 1606 aa17.62■□□□□ 0.41
VPS54-203ENST00000409558 FANCAO15360 1455 aa17.61■□□□□ 0.41
VPS54-203ENST00000409558 NOP58Q9Y2X3 529 aaKnown RBP17.61■□□□□ 0.41
VPS54-203ENST00000409558 SPINK5Q9NQ38 1064 aaPredicted RBP17.6■□□□□ 0.41
VPS54-203ENST00000409558 PPM1GO15355 546 aaPredicted RBP17.6■□□□□ 0.41
VPS54-203ENST00000409558 ZBTB47Q9UFB7 747 aaPredicted RBP17.6■□□□□ 0.41
VPS54-203ENST00000409558 SLC4A3P48751 1232 aa17.6■□□□□ 0.41
VPS54-203ENST00000409558 CDCA8Q53HL2 280 aa17.6■□□□□ 0.41
VPS54-203ENST00000409558 AMER1Q5JTC6 1135 aaPredicted RBP17.6■□□□□ 0.41
VPS54-203ENST00000409558 MORC1Q86VD1 984 aa17.6■□□□□ 0.41
VPS54-203ENST00000409558 STAG3Q9UJ98 1225 aa17.6■□□□□ 0.41
VPS54-203ENST00000409558 FANCIQ9NVI1 1328 aa17.59■□□□□ 0.41
VPS54-203ENST00000409558 ARHGEF5Q12774 1597 aa17.59■□□□□ 0.41
VPS54-203ENST00000409558 BCAR3O75815 825 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms