RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ABCC10Q5T3U5 1492 aa17.31■□□□□ 0.36
PTPRN-202ENST00000409251 SYCP2Q9BX26 1530 aa17.29■□□□□ 0.36
PTPRN-202ENST00000409251 RAPGEF3O95398 923 aa17.29■□□□□ 0.36
PTPRN-202ENST00000409251 NUTM2DQ5VT03 806 aaPredicted RBP17.29■□□□□ 0.36
PTPRN-202ENST00000409251 DNMT1P26358 1616 aaKnown RBP17.29■□□□□ 0.36
PTPRN-202ENST00000409251 NBPF1Q3BBV0 1214 aa17.28■□□□□ 0.36
PTPRN-202ENST00000409251 PLPPR3Q6T4P5 718 aa17.28■□□□□ 0.36
PTPRN-202ENST00000409251 PLEKHH2Q8IVE3 1493 aa17.27■□□□□ 0.36
PTPRN-202ENST00000409251 TRAPPC8Q9Y2L5 1435 aa17.26■□□□□ 0.35
PTPRN-202ENST00000409251 ST20-MTHFSA0A0A6YYL1 179 aa17.26■□□□□ 0.35
PTPRN-202ENST00000409251 PZPP20742 1482 aa17.26■□□□□ 0.35
PTPRN-202ENST00000409251 PRKRIP1Q9H875 184 aaPredicted RBP17.26■□□□□ 0.35
PTPRN-202ENST00000409251 TMC1Q8TDI8 760 aa17.25■□□□□ 0.35
PTPRN-202ENST00000409251 SCAPERQ9BY12 1400 aa17.25■□□□□ 0.35
PTPRN-202ENST00000409251 TTC37Q6PGP7 1564 aa17.25■□□□□ 0.35
PTPRN-202ENST00000409251 KIAA1107Q9UPP5 1409 aa17.23■□□□□ 0.35
PTPRN-202ENST00000409251 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.23■□□□□ 0.35
PTPRN-202ENST00000409251 ABCC2Q92887 1545 aa17.23■□□□□ 0.35
PTPRN-202ENST00000409251 CDC42BPAQ5VT25 1732 aa17.23■□□□□ 0.35
PTPRN-202ENST00000409251 MBD5Q9P267 1494 aa17.22■□□□□ 0.35
PTPRN-202ENST00000409251 CCDC141Q6ZP82 1450 aa17.22■□□□□ 0.35
PTPRN-202ENST00000409251 EXOC6Q8TAG9 804 aa17.21■□□□□ 0.35
PTPRN-202ENST00000409251 MLECQ14165 292 aa17.2■□□□□ 0.34
PTPRN-202ENST00000409251 KIF7Q2M1P5 1343 aa17.2■□□□□ 0.34
PTPRN-202ENST00000409251 ARHGEF12Q9NZN5 1544 aa17.2■□□□□ 0.34
PTPRN-202ENST00000409251 PLIN1O60240 522 aa17.19■□□□□ 0.34
PTPRN-202ENST00000409251 RSPH4AQ5TD94 716 aa17.19■□□□□ 0.34
PTPRN-202ENST00000409251 SAMD9LQ8IVG5 1584 aa17.19■□□□□ 0.34
PTPRN-202ENST00000409251 ITSN2Q9NZM3 1697 aa17.18■□□□□ 0.34
PTPRN-202ENST00000409251 ERICH6BQ5W0A0 696 aa17.18■□□□□ 0.34
PTPRN-202ENST00000409251 RPRD2Q5VT52 1461 aaKnown RBP17.18■□□□□ 0.34
PTPRN-202ENST00000409251 GCC2Q8IWJ2 1684 aa17.17■□□□□ 0.34
PTPRN-202ENST00000409251 USP47Q96K76 1375 aa17.17■□□□□ 0.34
PTPRN-202ENST00000409251 ASXL2Q76L83 1435 aa17.16■□□□□ 0.34
PTPRN-202ENST00000409251 CCDC144AA2RUR9 1427 aa17.16■□□□□ 0.34
PTPRN-202ENST00000409251 ROCK2O75116 1388 aaKnown RBP17.16■□□□□ 0.34
PTPRN-202ENST00000409251 PDE4AP27815 886 aa17.15■□□□□ 0.34
PTPRN-202ENST00000409251 ZBED9Q6R2W3 1325 aa17.15■□□□□ 0.34
PTPRN-202ENST00000409251 ARID4BQ4LE39 1312 aaPredicted RBP17.15■□□□□ 0.34
PTPRN-202ENST00000409251 PLCH2O75038 1416 aa17.14■□□□□ 0.34
PTPRN-202ENST00000409251 NUDCQ9Y266 331 aa17.13■□□□□ 0.33
PTPRN-202ENST00000409251 FAM69CQ0P6D2 419 aa17.13■□□□□ 0.33
PTPRN-202ENST00000409251 KDM5BQ9UGL1 1544 aa17.12■□□□□ 0.33
PTPRN-202ENST00000409251 CDC42BPBQ9Y5S2 1711 aa17.12■□□□□ 0.33
PTPRN-202ENST00000409251 CCDC7Q96M83 1385 aa17.12■□□□□ 0.33
PTPRN-202ENST00000409251 RGS3P49796 1198 aa17.11■□□□□ 0.33
PTPRN-202ENST00000409251 ZCCHC11Q5TAX3 1644 aaKnown RBP17.11■□□□□ 0.33
PTPRN-202ENST00000409251 FANCAO15360 1455 aa17.11■□□□□ 0.33
PTPRN-202ENST00000409251 CC2D1BQ5T0F9 858 aaKnown RBP17.1■□□□□ 0.33
PTPRN-202ENST00000409251 CLASP1Q7Z460 1538 aa17.1■□□□□ 0.33
PTPRN-202ENST00000409251 FRAT1Q92837 279 aaPredicted RBP17.09■□□□□ 0.33
PTPRN-202ENST00000409251 TEX14Q8IWB6 1497 aa17.08■□□□□ 0.33
PTPRN-202ENST00000409251 SAFB2Q14151 953 aaKnown RBP eCLIP17.08■□□□□ 0.33
PTPRN-202ENST00000409251 PPM1GO15355 546 aaPredicted RBP17.08■□□□□ 0.32
PTPRN-202ENST00000409251 ADGRL2O95490 1459 aa17.07■□□□□ 0.32
PTPRN-202ENST00000409251 WDR7Q9Y4E6 1490 aa17.07■□□□□ 0.32
PTPRN-202ENST00000409251 GSE1Q14687 1217 aa17.07■□□□□ 0.32
PTPRN-202ENST00000409251 ADGRL1O94910 1474 aa17.06■□□□□ 0.32
PTPRN-202ENST00000409251 SHROOM2Q13796 1616 aa17.06■□□□□ 0.32
PTPRN-202ENST00000409251 ADCY10Q96PN6 1610 aa17.06■□□□□ 0.32
PTPRN-202ENST00000409251 FAM135AQ9P2D6 1515 aa17.05■□□□□ 0.32
PTPRN-202ENST00000409251 WASHC2CQ9Y4E1 1318 aa17.05■□□□□ 0.32
PTPRN-202ENST00000409251 CD109Q6YHK3 1445 aa17.05■□□□□ 0.32
PTPRN-202ENST00000409251 NFKBIBQ15653 356 aa17.04■□□□□ 0.32
PTPRN-202ENST00000409251 PREX2Q70Z35 1606 aa17.02■□□□□ 0.32
PTPRN-202ENST00000409251 CFAP70Q5T0N1 1121 aa17.02■□□□□ 0.32
PTPRN-202ENST00000409251 TMEM132EQ6IEE7 984 aa17.01■□□□□ 0.31
PTPRN-202ENST00000409251 CFAP65Q6ZU64 1925 aaKnown RBP17.01■□□□□ 0.31
PTPRN-202ENST00000409251 RCAN3Q9UKA8 241 aa17.01■□□□□ 0.31
PTPRN-202ENST00000409251 SPRYD3Q8NCJ5 442 aa17■□□□□ 0.31
PTPRN-202ENST00000409251 FRAT2O75474 233 aaPredicted RBP16.99■□□□□ 0.31
PTPRN-202ENST00000409251 CDCA7LQ96GN5 454 aa16.99■□□□□ 0.31
PTPRN-202ENST00000409251 SLKQ9H2G2 1235 aaPredicted RBP16.99■□□□□ 0.31
PTPRN-202ENST00000409251 ADGBQ8N7X0 1667 aa16.99■□□□□ 0.31
PTPRN-202ENST00000409251 SHANK2Q9UPX8 1470 aa16.98■□□□□ 0.31
PTPRN-202ENST00000409251 KANK1Q14678 1352 aa16.98■□□□□ 0.31
PTPRN-202ENST00000409251 MYO5CQ9NQX4 1742 aa16.98■□□□□ 0.31
PTPRN-202ENST00000409251 STK26Q9P289 416 aa16.97■□□□□ 0.31
PTPRN-202ENST00000409251 TRAK1Q9UPV9 953 aa16.97■□□□□ 0.31
PTPRN-202ENST00000409251 PLA2R1Q13018 1463 aa16.97■□□□□ 0.31
PTPRN-202ENST00000409251 CNTLNQ9NXG0 1405 aa16.97■□□□□ 0.31
PTPRN-202ENST00000409251 TCERG1O14776 1098 aaKnown RBP16.96■□□□□ 0.31
PTPRN-202ENST00000409251 TNNT2P45379 298 aaPredicted RBP16.96■□□□□ 0.31
PTPRN-202ENST00000409251 RRP1P56182 461 aaKnown RBP16.96■□□□□ 0.31
PTPRN-202ENST00000409251 NAP1L5Q96NT1 182 aaPredicted RBP16.96■□□□□ 0.31
PTPRN-202ENST00000409251 GZF1Q9H116 711 aaPredicted RBP16.95■□□□□ 0.3
PTPRN-202ENST00000409251 STAG3Q9UJ98 1225 aa16.95■□□□□ 0.3
PTPRN-202ENST00000409251 CROCC2H7BZ55 1655 aa16.95■□□□□ 0.3
PTPRN-202ENST00000409251 PANK3Q9H999 370 aa16.95■□□□□ 0.3
PTPRN-202ENST00000409251 ADGRF5Q8IZF2 1346 aa16.94■□□□□ 0.3
PTPRN-202ENST00000409251 UBE2Q2Q8WVN8 375 aa16.94■□□□□ 0.3
PTPRN-202ENST00000409251 BACH2Q9BYV9 841 aa16.94■□□□□ 0.3
PTPRN-202ENST00000409251 VSIG10Q8N0Z9 540 aa16.93■□□□□ 0.3
PTPRN-202ENST00000409251 UHRF1BP1LA0JNW5 1464 aa16.93■□□□□ 0.3
PTPRN-202ENST00000409251 CRBNQ96SW2 442 aa16.93■□□□□ 0.3
PTPRN-202ENST00000409251 ARHGEF5Q12774 1597 aa16.92■□□□□ 0.3
PTPRN-202ENST00000409251 FBXO31Q5XUX0 539 aaPredicted RBP16.92■□□□□ 0.3
PTPRN-202ENST00000409251 DDRGK1Q96HY6 314 aa16.91■□□□□ 0.3
PTPRN-202ENST00000409251 UGGT1Q9NYU2 1555 aa16.9■□□□□ 0.3
PTPRN-202ENST00000409251 USP35Q9P2H5 1018 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms