RNA–Protein interactions for RNA: ENST00000407637.5

HERC3-203, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 1 (best) BASIC

Gene HERC3, Length 2,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-203ENST00000407637 UGGT2Q9NYU1 1516 aa16.45■□□□□ 0.22
HERC3-203ENST00000407637 MYH16Q9H6N6 1097 aa16.45■□□□□ 0.22
HERC3-203ENST00000407637 MBD5Q9P267 1494 aa16.45■□□□□ 0.22
HERC3-203ENST00000407637 E9PCH4 1651 aa16.45■□□□□ 0.22
HERC3-203ENST00000407637 NLRP1Q9C000 1473 aa16.44■□□□□ 0.22
HERC3-203ENST00000407637 FGD1P98174 961 aa16.44■□□□□ 0.22
HERC3-203ENST00000407637 NLRP13Q86W25 1043 aa16.44■□□□□ 0.22
HERC3-203ENST00000407637 EHBP1L1Q8N3D4 1523 aa16.43■□□□□ 0.22
HERC3-203ENST00000407637 MCM4P33991 863 aa16.43■□□□□ 0.22
HERC3-203ENST00000407637 GRPEL1Q9HAV7 217 aa16.42■□□□□ 0.22
HERC3-203ENST00000407637 TCOF1Q13428 1488 aaKnown RBP16.42■□□□□ 0.22
HERC3-203ENST00000407637 KIAA1211Q6ZU35 1233 aa16.42■□□□□ 0.22
HERC3-203ENST00000407637 BLMP54132 1417 aaPredicted RBP16.41■□□□□ 0.22
HERC3-203ENST00000407637 SPRYD3Q8NCJ5 442 aa16.4■□□□□ 0.22
HERC3-203ENST00000407637 TRIM44Q96DX7 344 aaPredicted RBP16.4■□□□□ 0.22
HERC3-203ENST00000407637 ZMYM4Q5VZL5 1548 aa16.4■□□□□ 0.22
HERC3-203ENST00000407637 TRAK2O60296 914 aa16.4■□□□□ 0.22
HERC3-203ENST00000407637 CTTNBP2Q8WZ74 1663 aa16.39■□□□□ 0.21
HERC3-203ENST00000407637 SLC4A1APQ9BWU0 796 aaKnown RBP16.39■□□□□ 0.21
HERC3-203ENST00000407637 ARHGEF11O15085 1522 aa16.39■□□□□ 0.21
HERC3-203ENST00000407637 TBC1D2Q9BYX2 928 aa16.38■□□□□ 0.21
HERC3-203ENST00000407637 PARD3Q8TEW0 1356 aa16.38■□□□□ 0.21
HERC3-203ENST00000407637 MAGI3Q5TCQ9 1506 aa16.37■□□□□ 0.21
HERC3-203ENST00000407637 PLEKHH2Q8IVE3 1493 aa16.37■□□□□ 0.21
HERC3-203ENST00000407637 GRIN2BQ13224 1484 aa16.35■□□□□ 0.21
HERC3-203ENST00000407637 RIPK4P57078 832 aa16.34■□□□□ 0.21
HERC3-203ENST00000407637 CARD11Q9BXL7 1154 aa16.32■□□□□ 0.2
HERC3-203ENST00000407637 IGHDP01880 384 aa16.32■□□□□ 0.2
HERC3-203ENST00000407637 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.32■□□□□ 0.2
HERC3-203ENST00000407637 RALGAPBQ86X10 1494 aa16.32■□□□□ 0.2
HERC3-203ENST00000407637 ST20-MTHFSA0A0A6YYL1 179 aa16.32■□□□□ 0.2
HERC3-203ENST00000407637 DUSP27Q5VZP5 1158 aa16.31■□□□□ 0.2
HERC3-203ENST00000407637 FAM13BQ9NYF5 915 aa16.31■□□□□ 0.2
HERC3-203ENST00000407637 EIF3AQ14152 1382 aaKnown RBP16.3■□□□□ 0.2
HERC3-203ENST00000407637 PDE4CQ08493 712 aa16.3■□□□□ 0.2
HERC3-203ENST00000407637 TBC1D32Q96NH3 1257 aa16.3■□□□□ 0.2
HERC3-203ENST00000407637 ARID3AQ99856 593 aa16.3■□□□□ 0.2
HERC3-203ENST00000407637 ZHX1Q9UKY1 873 aaPredicted RBP16.29■□□□□ 0.2
HERC3-203ENST00000407637 ZNF608Q9ULD9 1512 aaPredicted RBP16.29■□□□□ 0.2
HERC3-203ENST00000407637 PLEKHH1Q9ULM0 1364 aa16.29■□□□□ 0.2
HERC3-203ENST00000407637 GAS2L3Q86XJ1 694 aa16.29■□□□□ 0.2
HERC3-203ENST00000407637 UPF2Q9HAU5 1272 aaKnown RBP16.29■□□□□ 0.2
HERC3-203ENST00000407637 MAPK8IP3Q9UPT6 1336 aa16.28■□□□□ 0.2
HERC3-203ENST00000407637 INSRP06213 1382 aa16.28■□□□□ 0.2
HERC3-203ENST00000407637 ISY1Q9ULR0 285 aaKnown RBP16.28■□□□□ 0.2
HERC3-203ENST00000407637 KIF21AQ7Z4S6 1674 aa16.28■□□□□ 0.2
HERC3-203ENST00000407637 PZPP20742 1482 aa16.28■□□□□ 0.2
HERC3-203ENST00000407637 PRDM2Q13029 1718 aa16.28■□□□□ 0.2
HERC3-203ENST00000407637 CC2D1BQ5T0F9 858 aaKnown RBP16.28■□□□□ 0.2
HERC3-203ENST00000407637 CHMP5Q9NZZ3 219 aa16.28■□□□□ 0.2
HERC3-203ENST00000407637 OFD1O75665 1012 aa16.27■□□□□ 0.2
HERC3-203ENST00000407637 SMAP1Q8IYB5 467 aaPredicted RBP16.26■□□□□ 0.19
HERC3-203ENST00000407637 PRDM10Q9NQV6 1147 aa16.26■□□□□ 0.19
HERC3-203ENST00000407637 DDX11L8A8MPP1 907 aa16.26■□□□□ 0.19
HERC3-203ENST00000407637 MAP7D2Q96T17 732 aa16.26■□□□□ 0.19
HERC3-203ENST00000407637 SAMD9Q5K651 1589 aa16.25■□□□□ 0.19
HERC3-203ENST00000407637 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.25■□□□□ 0.19
HERC3-203ENST00000407637 ZSCAN30Q86W11 494 aa16.24■□□□□ 0.19
HERC3-203ENST00000407637 DAPK1P53355 1430 aa16.24■□□□□ 0.19
HERC3-203ENST00000407637 R3HCC1Q9Y3T6 440 aaKnown RBP16.23■□□□□ 0.19
HERC3-203ENST00000407637 UHRF1BP1Q6BDS2 1440 aa16.23■□□□□ 0.19
HERC3-203ENST00000407637 ROCK1Q13464 1354 aa16.23■□□□□ 0.19
HERC3-203ENST00000407637 ADAMTS8Q9UP79 889 aa16.22■□□□□ 0.19
HERC3-203ENST00000407637 PER1O15534 1290 aaPredicted RBP16.21■□□□□ 0.19
HERC3-203ENST00000407637 KIAA1107Q9UPP5 1409 aa16.21■□□□□ 0.19
HERC3-203ENST00000407637 BCAR3O75815 825 aa16.21■□□□□ 0.19
HERC3-203ENST00000407637 GOLGA2Q08379 1002 aa16.21■□□□□ 0.19
HERC3-203ENST00000407637 MSNP26038 577 aaKnown RBP16.2■□□□□ 0.18
HERC3-203ENST00000407637 TERF1P54274 439 aa16.2■□□□□ 0.18
HERC3-203ENST00000407637 CCDC173Q0VFZ6 552 aa16.2■□□□□ 0.18
HERC3-203ENST00000407637 DNMT1P26358 1616 aaKnown RBP16.19■□□□□ 0.18
HERC3-203ENST00000407637 ZNF521Q96K83 1311 aa16.19■□□□□ 0.18
HERC3-203ENST00000407637 UQCRHLA0A096LP55 91 aa16.18■□□□□ 0.18
HERC3-203ENST00000407637 UQCRHP07919 91 aa16.18■□□□□ 0.18
HERC3-203ENST00000407637 CUL7Q14999 1698 aa16.18■□□□□ 0.18
HERC3-203ENST00000407637 HMGXB3Q12766 1538 aa16.18■□□□□ 0.18
HERC3-203ENST00000407637 RTEL1-TNFRSF6BF6WH68 1400 aa16.18■□□□□ 0.18
HERC3-203ENST00000407637 ABCC5O15440 1437 aa16.18■□□□□ 0.18
HERC3-203ENST00000407637 PPP1R9BQ96SB3 815 aa16.17■□□□□ 0.18
HERC3-203ENST00000407637 ZNF692Q9BU19 519 aaPredicted RBP16.17■□□□□ 0.18
HERC3-203ENST00000407637 KDM2AQ9Y2K7 1162 aa16.17■□□□□ 0.18
HERC3-203ENST00000407637 CC2D2AQ9P2K1 1620 aa16.17■□□□□ 0.18
HERC3-203ENST00000407637 CLUAP1Q96AJ1 413 aa16.17■□□□□ 0.18
HERC3-203ENST00000407637 GAPVD1Q14C86 1478 aa16.16■□□□□ 0.18
HERC3-203ENST00000407637 NASPP49321 788 aaPredicted RBP16.16■□□□□ 0.18
HERC3-203ENST00000407637 SLFN5Q08AF3 891 aa16.16■□□□□ 0.18
HERC3-203ENST00000407637 PKD2Q13563 968 aa16.15■□□□□ 0.18
HERC3-203ENST00000407637 BBXQ8WY36 941 aaPredicted RBP16.15■□□□□ 0.18
HERC3-203ENST00000407637 BCL11BQ9C0K0 894 aaPredicted RBP16.15■□□□□ 0.18
HERC3-203ENST00000407637 CGNL1Q0VF96 1302 aa16.14■□□□□ 0.17
HERC3-203ENST00000407637 KIAA0586Q9BVV6 1533 aa16.14■□□□□ 0.17
HERC3-203ENST00000407637 DMTNQ08495 405 aa16.14■□□□□ 0.17
HERC3-203ENST00000407637 SPINK5Q9NQ38 1064 aaPredicted RBP16.14■□□□□ 0.17
HERC3-203ENST00000407637 COG6Q9Y2V7 657 aa16.14■□□□□ 0.17
HERC3-203ENST00000407637 NESP48681 1621 aa16.14■□□□□ 0.17
HERC3-203ENST00000407637 TNPO1Q92973 898 aaKnown RBP16.14■□□□□ 0.17
HERC3-203ENST00000407637 NKTRP30414 1462 aaKnown RBP16.14■□□□□ 0.17
HERC3-203ENST00000407637 WDR43Q15061 677 aaKnown RBP eCLIP16.13■□□□□ 0.17
HERC3-203ENST00000407637 PANK1Q8TE04 598 aa16.13■□□□□ 0.17
HERC3-203ENST00000407637 ARHGEF12Q9NZN5 1544 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms