RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 FHOD3Q2V2M9 1422 aa11.67□□□□□ -0.54
COL28A1-201ENST00000399429 CUX2O14529 1486 aa11.66□□□□□ -0.54
COL28A1-201ENST00000399429 UQCRHLA0A096LP55 91 aa11.66□□□□□ -0.54
COL28A1-201ENST00000399429 UQCRHP07919 91 aa11.66□□□□□ -0.54
COL28A1-201ENST00000399429 PANK1Q8TE04 598 aa11.66□□□□□ -0.54
COL28A1-201ENST00000399429 PANK3Q9H999 370 aa11.66□□□□□ -0.54
COL28A1-201ENST00000399429 CFDP1Q9UEE9 299 aaPredicted RBP11.66□□□□□ -0.54
COL28A1-201ENST00000399429 CGNL1Q0VF96 1302 aa11.65□□□□□ -0.54
COL28A1-201ENST00000399429 LRRC9Q6ZRR7 1453 aa11.65□□□□□ -0.55
COL28A1-201ENST00000399429 ITPRIPQ8IWB1 547 aa11.64□□□□□ -0.55
COL28A1-201ENST00000399429 APAF1O14727 1248 aa11.64□□□□□ -0.55
COL28A1-201ENST00000399429 MAPK8IP2Q13387 824 aaPredicted RBP11.64□□□□□ -0.55
COL28A1-201ENST00000399429 MTERF4Q7Z6M4 381 aaKnown RBP11.64□□□□□ -0.55
COL28A1-201ENST00000399429 FBLN2P98095 1184 aa11.64□□□□□ -0.55
COL28A1-201ENST00000399429 BRD4O60885 1362 aaPredicted RBP11.64□□□□□ -0.55
COL28A1-201ENST00000399429 CSPP1Q1MSJ5 1256 aa11.63□□□□□ -0.55
COL28A1-201ENST00000399429 TNNT3P45378 269 aaPredicted RBP11.63□□□□□ -0.55
COL28A1-201ENST00000399429 CCDC173Q0VFZ6 552 aa11.63□□□□□ -0.55
COL28A1-201ENST00000399429 ADAMTS8Q9UP79 889 aa11.63□□□□□ -0.55
COL28A1-201ENST00000399429 PDE4CQ08493 712 aa11.63□□□□□ -0.55
COL28A1-201ENST00000399429 SLC24A1O60721 1099 aa11.62□□□□□ -0.55
COL28A1-201ENST00000399429 ZSCAN30Q86W11 494 aa11.62□□□□□ -0.55
COL28A1-201ENST00000399429 RNF214Q8ND24 703 aa11.62□□□□□ -0.55
COL28A1-201ENST00000399429 SMARCA2P51531 1590 aa11.62□□□□□ -0.55
COL28A1-201ENST00000399429 BCAR3O75815 825 aa11.62□□□□□ -0.55
COL28A1-201ENST00000399429 FOXD4L6Q3SYB3 417 aaPredicted RBP11.62□□□□□ -0.55
COL28A1-201ENST00000399429 FOXD4L3Q6VB84 417 aaPredicted RBP11.62□□□□□ -0.55
COL28A1-201ENST00000399429 RRP7AQ9Y3A4 280 aaKnown RBP11.62□□□□□ -0.55
COL28A1-201ENST00000399429 MPNDQ8N594 471 aa11.61□□□□□ -0.55
COL28A1-201ENST00000399429 CDCA8Q53HL2 280 aa11.61□□□□□ -0.55
COL28A1-201ENST00000399429 TBC1D2Q9BYX2 928 aa11.61□□□□□ -0.55
COL28A1-201ENST00000399429 C8orf34Q49A92 452 aa11.6□□□□□ -0.55
COL28A1-201ENST00000399429 MCTP1Q6DN14 999 aa11.6□□□□□ -0.55
COL28A1-201ENST00000399429 CHGAP10645 457 aaKnown RBP11.6□□□□□ -0.55
COL28A1-201ENST00000399429 CAVIN1Q6NZI2 390 aaKnown RBP11.6□□□□□ -0.55
COL28A1-201ENST00000399429 CASC1Q6TDU7 716 aa11.6□□□□□ -0.55
COL28A1-201ENST00000399429 DRC7Q8IY82 874 aa11.6□□□□□ -0.55
COL28A1-201ENST00000399429 XPCQ01831 940 aaPredicted RBP11.6□□□□□ -0.55
COL28A1-201ENST00000399429 FGD6Q6ZV73 1430 aa11.59□□□□□ -0.55
COL28A1-201ENST00000399429 BBXQ8WY36 941 aaPredicted RBP11.59□□□□□ -0.55
COL28A1-201ENST00000399429 ISY1Q9ULR0 285 aaKnown RBP11.59□□□□□ -0.55
COL28A1-201ENST00000399429 APBB1O00213 710 aa11.58□□□□□ -0.56
COL28A1-201ENST00000399429 CFAP53Q96M91 514 aa11.58□□□□□ -0.56
COL28A1-201ENST00000399429 E9PSI1 815 aa11.58□□□□□ -0.56
COL28A1-201ENST00000399429 BCL11BQ9C0K0 894 aaPredicted RBP11.58□□□□□ -0.56
COL28A1-201ENST00000399429 PDZRN3Q9UPQ7 1066 aa11.58□□□□□ -0.56
COL28A1-201ENST00000399429 CBX1P83916 185 aa11.57□□□□□ -0.56
COL28A1-201ENST00000399429 SMC4Q9NTJ3 1288 aa11.57□□□□□ -0.56
COL28A1-201ENST00000399429 NOL8Q76FK4 1167 aaKnown RBP11.57□□□□□ -0.56
COL28A1-201ENST00000399429 U2SURPO15042 1029 aaKnown RBP11.56□□□□□ -0.56
COL28A1-201ENST00000399429 SYAP1Q96A49 352 aaPredicted RBP11.55□□□□□ -0.56
COL28A1-201ENST00000399429 NCOA1Q15788 1441 aa11.55□□□□□ -0.56
COL28A1-201ENST00000399429 NUP155O75694 1391 aa11.54□□□□□ -0.56
COL28A1-201ENST00000399429 SYNJ1O43426 1573 aa11.54□□□□□ -0.56
COL28A1-201ENST00000399429 RNF123Q5XPI4 1314 aa11.54□□□□□ -0.56
COL28A1-201ENST00000399429 SENP3Q9H4L4 574 aaPredicted RBP11.54□□□□□ -0.56
COL28A1-201ENST00000399429 SEC24BO95487 1268 aa11.53□□□□□ -0.56
COL28A1-201ENST00000399429 LNPKQ9C0E8 428 aa11.53□□□□□ -0.56
COL28A1-201ENST00000399429 CCDC39Q9UFE4 941 aa11.53□□□□□ -0.56
COL28A1-201ENST00000399429 ANKRD45Q5TZF3 282 aa11.52□□□□□ -0.56
COL28A1-201ENST00000399429 MORC1Q86VD1 984 aa11.52□□□□□ -0.57
COL28A1-201ENST00000399429 PRPF40AO75400 957 aaKnown RBP11.51□□□□□ -0.57
COL28A1-201ENST00000399429 HFM1A2PYH4 1435 aa11.51□□□□□ -0.57
COL28A1-201ENST00000399429 IGHDP01880 384 aa11.51□□□□□ -0.57
COL28A1-201ENST00000399429 U2AF1L5P0DN76 240 aaPredicted RBP11.51□□□□□ -0.57
COL28A1-201ENST00000399429 U2AF1Q01081 240 aaKnown RBP eCLIP11.51□□□□□ -0.57
COL28A1-201ENST00000399429 TNPO1Q92973 898 aaKnown RBP11.5□□□□□ -0.57
COL28A1-201ENST00000399429 CGNQ9P2M7 1197 aaKnown RBP11.49□□□□□ -0.57
COL28A1-201ENST00000399429 ST18O60284 1047 aa11.49□□□□□ -0.57
COL28A1-201ENST00000399429 ZKSCAN2Q63HK3 967 aa11.49□□□□□ -0.57
COL28A1-201ENST00000399429 ZNF592Q92610 1267 aa11.49□□□□□ -0.57
COL28A1-201ENST00000399429 IPO8O15397 1037 aaKnown RBP11.49□□□□□ -0.57
COL28A1-201ENST00000399429 PRXQ9BXM0 1461 aa11.49□□□□□ -0.57
COL28A1-201ENST00000399429 MAP3K1Q13233 1512 aa11.48□□□□□ -0.57
COL28A1-201ENST00000399429 GOLGA6L4A6NEF3 574 aa11.48□□□□□ -0.57
COL28A1-201ENST00000399429 HMGN5P82970 282 aaKnown RBP11.48□□□□□ -0.57
COL28A1-201ENST00000399429 NUCB2P80303 420 aa11.48□□□□□ -0.57
COL28A1-201ENST00000399429 PDE3AQ14432 1141 aa11.48□□□□□ -0.57
COL28A1-201ENST00000399429 TBC1D32Q96NH3 1257 aa11.48□□□□□ -0.57
COL28A1-201ENST00000399429 NAIPQ13075 1403 aa11.47□□□□□ -0.57
COL28A1-201ENST00000399429 PHF14O94880 888 aa11.47□□□□□ -0.57
COL28A1-201ENST00000399429 EIF3AQ14152 1382 aaKnown RBP11.47□□□□□ -0.57
COL28A1-201ENST00000399429 TIAM1Q13009 1591 aa11.47□□□□□ -0.57
COL28A1-201ENST00000399429 SPDYE4A6NLX3 237 aa11.47□□□□□ -0.57
COL28A1-201ENST00000399429 IGSF3O75054 1194 aa11.47□□□□□ -0.57
COL28A1-201ENST00000399429 DZIP1LQ8IYY4 767 aaKnown RBP11.47□□□□□ -0.57
COL28A1-201ENST00000399429 GOLGA6L6A8MZA4 724 aa11.46□□□□□ -0.57
COL28A1-201ENST00000399429 OFD1O75665 1012 aa11.46□□□□□ -0.57
COL28A1-201ENST00000399429 SASS6Q6UVJ0 657 aa11.46□□□□□ -0.57
COL28A1-201ENST00000399429 CHMP4BQ9H444 224 aaKnown RBP11.46□□□□□ -0.57
COL28A1-201ENST00000399429 SMARCA4P51532 1647 aa11.46□□□□□ -0.57
COL28A1-201ENST00000399429 MYOM3Q5VTT5 1437 aa11.46□□□□□ -0.58
COL28A1-201ENST00000399429 IGF1RP08069 1367 aa11.46□□□□□ -0.58
COL28A1-201ENST00000399429 DYNC1I1O14576 645 aa11.45□□□□□ -0.58
COL28A1-201ENST00000399429 DIAPH3Q9NSV4 1193 aa11.45□□□□□ -0.58
COL28A1-201ENST00000399429 ZNF644Q9H582 1327 aaPredicted RBP11.45□□□□□ -0.58
COL28A1-201ENST00000399429 DUSP27Q5VZP5 1158 aa11.45□□□□□ -0.58
COL28A1-201ENST00000399429 PLCD3Q8N3E9 789 aa11.45□□□□□ -0.58
COL28A1-201ENST00000399429 KIF3AQ9Y496 699 aa11.45□□□□□ -0.58
COL28A1-201ENST00000399429 ERICH3Q5RHP9 1530 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms