RNA–Protein interactions for RNA: ENST00000398527.6

MSL3-207, Transcript of MSL complex subunit 3, humanhuman

TSL 2 BASIC

Gene MSL3, Length 2,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-207ENST00000398527 MYT1LQ9UL68 1186 aa15.06■□□□□ 0
MSL3-207ENST00000398527 RAPGEF6Q8TEU7 1601 aa15.06■□□□□ 0
MSL3-207ENST00000398527 SAMD9Q5K651 1589 aa15.05■□□□□ -0
MSL3-207ENST00000398527 SETD1BQ9UPS6 1966 aaKnown RBP15.05■□□□□ -0
MSL3-207ENST00000398527 BCCIPQ9P287 314 aaKnown RBP eCLIP15.04■□□□□ -0
MSL3-207ENST00000398527 PPP6R1Q9UPN7 881 aa15.04■□□□□ -0
MSL3-207ENST00000398527 CASKIN1Q8WXD9 1431 aa15.03■□□□□ -0
MSL3-207ENST00000398527 ATP10AO60312 1499 aa15.03■□□□□ -0
MSL3-207ENST00000398527 C9orf84Q5VXU9 1444 aa15.03■□□□□ -0
MSL3-207ENST00000398527 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.03■□□□□ -0
MSL3-207ENST00000398527 MED1Q15648 1581 aaPredicted RBP15.02■□□□□ -0
MSL3-207ENST00000398527 IGSF3O75054 1194 aa15.02■□□□□ -0
MSL3-207ENST00000398527 FMN1Q68DA7 1419 aa15.01□□□□□ -0.01
MSL3-207ENST00000398527 IRX6P78412 446 aaPredicted RBP15.01□□□□□ -0.01
MSL3-207ENST00000398527 UBAP1LF5GYI3 381 aa15□□□□□ -0.01
MSL3-207ENST00000398527 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15□□□□□ -0.01
MSL3-207ENST00000398527 NCOA1Q15788 1441 aa15□□□□□ -0.01
MSL3-207ENST00000398527 P3H3Q8IVL6 736 aa15□□□□□ -0.01
MSL3-207ENST00000398527 NUP153P49790 1475 aaKnown RBP14.99□□□□□ -0.01
MSL3-207ENST00000398527 C3P01024 1663 aa14.96□□□□□ -0.01
MSL3-207ENST00000398527 SCAPERQ9BY12 1400 aa14.96□□□□□ -0.01
MSL3-207ENST00000398527 SETD5Q9C0A6 1442 aa14.95□□□□□ -0.02
MSL3-207ENST00000398527 PLEKHD1A6NEE1 506 aa14.94□□□□□ -0.02
MSL3-207ENST00000398527 POLR3GLQ9BT43 218 aa14.93□□□□□ -0.02
MSL3-207ENST00000398527 TRAPPC8Q9Y2L5 1435 aa14.93□□□□□ -0.02
MSL3-207ENST00000398527 RAB3GAP2Q9H2M9 1393 aa14.92□□□□□ -0.02
MSL3-207ENST00000398527 ZNF335Q9H4Z2 1342 aaPredicted RBP14.91□□□□□ -0.02
MSL3-207ENST00000398527 CAMSAP1Q5T5Y3 1602 aa14.9□□□□□ -0.02
MSL3-207ENST00000398527 HSPA1LP34931 641 aa14.89□□□□□ -0.03
MSL3-207ENST00000398527 PLCH2O75038 1416 aa14.89□□□□□ -0.03
MSL3-207ENST00000398527 REREQ9P2R6 1566 aa14.89□□□□□ -0.03
MSL3-207ENST00000398527 LRRIQ1Q96JM4 1722 aa14.88□□□□□ -0.03
MSL3-207ENST00000398527 CFAP44Q96MT7 982 aa14.87□□□□□ -0.03
MSL3-207ENST00000398527 DIP2CQ9Y2E4 1556 aa14.86□□□□□ -0.03
MSL3-207ENST00000398527 MIER1Q8N108 512 aa14.86□□□□□ -0.03
MSL3-207ENST00000398527 ZNF518AQ6AHZ1 1483 aa14.86□□□□□ -0.03
MSL3-207ENST00000398527 PHF23Q9BUL5 403 aaPredicted RBP14.86□□□□□ -0.03
MSL3-207ENST00000398527 TSHZ2Q9NRE2 1034 aa14.86□□□□□ -0.03
MSL3-207ENST00000398527 ATP1B4Q9UN42 357 aaPredicted RBP14.86□□□□□ -0.03
MSL3-207ENST00000398527 KDM5CP41229 1560 aa14.85□□□□□ -0.03
MSL3-207ENST00000398527 AGLP35573 1532 aa14.85□□□□□ -0.03
MSL3-207ENST00000398527 VSIG10Q8N0Z9 540 aa14.84□□□□□ -0.03
MSL3-207ENST00000398527 NCKAP5LQ9HCH0 1330 aa14.84□□□□□ -0.03
MSL3-207ENST00000398527 CCDC18Q5T9S5 1454 aa14.84□□□□□ -0.03
MSL3-207ENST00000398527 NAP1L2Q9ULW6 460 aaPredicted RBP14.83□□□□□ -0.03
MSL3-207ENST00000398527 EHBP1L1Q8N3D4 1523 aa14.83□□□□□ -0.04
MSL3-207ENST00000398527 ESF1Q9H501 851 aaKnown RBP14.83□□□□□ -0.04
MSL3-207ENST00000398527 NPATQ14207 1427 aa14.83□□□□□ -0.04
MSL3-207ENST00000398527 FGD6Q6ZV73 1430 aa14.83□□□□□ -0.04
MSL3-207ENST00000398527 CNTLNQ9NXG0 1405 aa14.83□□□□□ -0.04
MSL3-207ENST00000398527 EFCAB2Q5VUJ9 269 aa14.82□□□□□ -0.04
MSL3-207ENST00000398527 PLA2R1Q13018 1463 aa14.81□□□□□ -0.04
MSL3-207ENST00000398527 MYO5CQ9NQX4 1742 aa14.81□□□□□ -0.04
MSL3-207ENST00000398527 ABCA6Q8N139 1617 aa14.81□□□□□ -0.04
MSL3-207ENST00000398527 MTUS2Q5JR59 1369 aa14.81□□□□□ -0.04
MSL3-207ENST00000398527 SUPT6HQ7KZ85 1726 aaKnown RBP14.81□□□□□ -0.04
MSL3-207ENST00000398527 HMGB1P09429 215 aaKnown RBP14.81□□□□□ -0.04
MSL3-207ENST00000398527 PKD2Q13563 968 aa14.8□□□□□ -0.04
MSL3-207ENST00000398527 CCDC9Q9Y3X0 531 aaKnown RBP14.8□□□□□ -0.04
MSL3-207ENST00000398527 PIP4K2BP78356 416 aa14.8□□□□□ -0.04
MSL3-207ENST00000398527 TCOF1Q13428 1488 aaKnown RBP14.79□□□□□ -0.04
MSL3-207ENST00000398527 MROH2AA6NES4 1674 aa14.79□□□□□ -0.04
MSL3-207ENST00000398527 ZNF142P52746 1687 aaPredicted RBP14.79□□□□□ -0.04
MSL3-207ENST00000398527 TOM1O60784 492 aa14.78□□□□□ -0.04
MSL3-207ENST00000398527 HFM1A2PYH4 1435 aa14.77□□□□□ -0.04
MSL3-207ENST00000398527 AFAP1Q8N556 730 aa14.77□□□□□ -0.04
MSL3-207ENST00000398527 MLH3Q9UHC1 1453 aa14.77□□□□□ -0.05
MSL3-207ENST00000398527 MYOM3Q5VTT5 1437 aa14.76□□□□□ -0.05
MSL3-207ENST00000398527 CDK13Q14004 1512 aaKnown RBP14.76□□□□□ -0.05
MSL3-207ENST00000398527 ITGAEP38570 1179 aa14.76□□□□□ -0.05
MSL3-207ENST00000398527 FAM50AQ14320 339 aaKnown RBP14.76□□□□□ -0.05
MSL3-207ENST00000398527 NCOA2Q15596 1464 aa14.76□□□□□ -0.05
MSL3-207ENST00000398527 CPS1P31327 1500 aa14.75□□□□□ -0.05
MSL3-207ENST00000398527 MYO3AQ8NEV4 1616 aa14.75□□□□□ -0.05
MSL3-207ENST00000398527 PTPN23Q9H3S7 1636 aa14.73□□□□□ -0.05
MSL3-207ENST00000398527 ZFP91Q96JP5 570 aaPredicted RBP14.73□□□□□ -0.05
MSL3-207ENST00000398527 BRPF3Q9ULD4 1205 aa14.73□□□□□ -0.05
MSL3-207ENST00000398527 CEP170BQ9Y4F5 1589 aaPredicted RBP14.73□□□□□ -0.05
MSL3-207ENST00000398527 ARHGAP5Q13017 1502 aa14.72□□□□□ -0.05
MSL3-207ENST00000398527 ZMYM3Q14202 1370 aa14.71□□□□□ -0.06
MSL3-207ENST00000398527 PTPRKQ15262 1439 aa14.7□□□□□ -0.06
MSL3-207ENST00000398527 ALKQ9UM73 1620 aa14.69□□□□□ -0.06
MSL3-207ENST00000398527 GCC2Q8IWJ2 1684 aa14.69□□□□□ -0.06
MSL3-207ENST00000398527 KIF14Q15058 1648 aa14.69□□□□□ -0.06
MSL3-207ENST00000398527 SHANK2Q9UPX8 1470 aa14.68□□□□□ -0.06
MSL3-207ENST00000398527 MIA2Q96PC5 1412 aa14.68□□□□□ -0.06
MSL3-207ENST00000398527 IPO4Q8TEX9 1081 aaKnown RBP14.67□□□□□ -0.06
MSL3-207ENST00000398527 PUS7Q96PZ0 661 aaKnown RBP14.67□□□□□ -0.06
MSL3-207ENST00000398527 RGS17Q9UGC6 210 aaPredicted RBP14.67□□□□□ -0.06
MSL3-207ENST00000398527 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.67□□□□□ -0.06
MSL3-207ENST00000398527 KIDINS220Q9ULH0 1771 aa14.67□□□□□ -0.06
MSL3-207ENST00000398527 NAIPQ13075 1403 aa14.67□□□□□ -0.06
MSL3-207ENST00000398527 TICAM2Q86XR7 235 aa14.66□□□□□ -0.06
MSL3-207ENST00000398527 TEX2Q8IWB9 1127 aa14.66□□□□□ -0.06
MSL3-207ENST00000398527 CHMP4BQ9H444 224 aaKnown RBP14.65□□□□□ -0.06
MSL3-207ENST00000398527 ABCC1P33527 1531 aa14.65□□□□□ -0.06
MSL3-207ENST00000398527 CLTCQ00610 1675 aaKnown RBP14.65□□□□□ -0.06
MSL3-207ENST00000398527 ITSN2Q9NZM3 1697 aa14.65□□□□□ -0.06
MSL3-207ENST00000398527 CNPY4Q8N129 248 aa14.65□□□□□ -0.06
MSL3-207ENST00000398527 NCLP19338 710 aaKnown RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms