RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 BECN2A8MW95 431 aa17.26■□□□□ 0.35
COL4A3-202ENST00000396578 DDX49Q9Y6V7 483 aaKnown RBP17.26■□□□□ 0.35
COL4A3-202ENST00000396578 BAZ1BQ9UIG0 1483 aaKnown RBP17.26■□□□□ 0.35
COL4A3-202ENST00000396578 PHLDB1Q86UU1 1377 aa17.25■□□□□ 0.35
COL4A3-202ENST00000396578 PATL2C9JE40 543 aaKnown RBP17.25■□□□□ 0.35
COL4A3-202ENST00000396578 CHMP4CQ96CF2 233 aa17.25■□□□□ 0.35
COL4A3-202ENST00000396578 PAK3O75914 559 aaPredicted RBP17.24■□□□□ 0.35
COL4A3-202ENST00000396578 STK26Q9P289 416 aa17.24■□□□□ 0.35
COL4A3-202ENST00000396578 MARCH6O60337 910 aa17.24■□□□□ 0.35
COL4A3-202ENST00000396578 SLC4A10Q6U841 1118 aa17.23■□□□□ 0.35
COL4A3-202ENST00000396578 VPS53Q5VIR6 699 aa17.23■□□□□ 0.35
COL4A3-202ENST00000396578 FAM184AQ8NB25 1140 aa17.23■□□□□ 0.35
COL4A3-202ENST00000396578 ZNF592Q92610 1267 aa17.22■□□□□ 0.35
COL4A3-202ENST00000396578 PDE3BQ13370 1112 aa17.21■□□□□ 0.35
COL4A3-202ENST00000396578 CENPQQ7L2Z9 268 aaPredicted RBP17.21■□□□□ 0.34
COL4A3-202ENST00000396578 LMOD3Q0VAK6 560 aa17.2■□□□□ 0.34
COL4A3-202ENST00000396578 FAM161AQ3B820 660 aa17.2■□□□□ 0.34
COL4A3-202ENST00000396578 RRP12Q5JTH9 1297 aaKnown RBP17.19■□□□□ 0.34
COL4A3-202ENST00000396578 CSB-PGBD3P0DP91 1061 aa17.19■□□□□ 0.34
COL4A3-202ENST00000396578 TOMM22Q9NS69 142 aa17.19■□□□□ 0.34
COL4A3-202ENST00000396578 NOM1Q5C9Z4 860 aaKnown RBP17.19■□□□□ 0.34
COL4A3-202ENST00000396578 CLUAP1Q96AJ1 413 aa17.18■□□□□ 0.34
COL4A3-202ENST00000396578 IPO7O95373 1038 aaKnown RBP17.18■□□□□ 0.34
COL4A3-202ENST00000396578 G3V3G9 751 aa17.17■□□□□ 0.34
COL4A3-202ENST00000396578 DCAF8Q5TAQ9 597 aa17.17■□□□□ 0.34
COL4A3-202ENST00000396578 AKAP17AQ02040 695 aaKnown RBP17.17■□□□□ 0.34
COL4A3-202ENST00000396578 PKD2Q13563 968 aa17.17■□□□□ 0.34
COL4A3-202ENST00000396578 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.16■□□□□ 0.34
COL4A3-202ENST00000396578 CCDC146Q8IYE0 955 aa17.16■□□□□ 0.34
COL4A3-202ENST00000396578 RILPL2Q969X0 211 aa17.16■□□□□ 0.34
COL4A3-202ENST00000396578 ANKRD20A12PQ8NF67 263 aa17.15■□□□□ 0.34
COL4A3-202ENST00000396578 ANO8Q9HCE9 1232 aaPredicted RBP17.15■□□□□ 0.34
COL4A3-202ENST00000396578 FAM13BQ9NYF5 915 aa17.15■□□□□ 0.34
COL4A3-202ENST00000396578 FOXD4L6Q3SYB3 417 aaPredicted RBP17.14■□□□□ 0.34
COL4A3-202ENST00000396578 FOXD4L3Q6VB84 417 aaPredicted RBP17.14■□□□□ 0.34
COL4A3-202ENST00000396578 HOMER1Q86YM7 354 aa17.14■□□□□ 0.33
COL4A3-202ENST00000396578 HOOK1Q9UJC3 728 aaKnown RBP17.14■□□□□ 0.33
COL4A3-202ENST00000396578 TERF2IPQ9NYB0 399 aa17.14■□□□□ 0.33
COL4A3-202ENST00000396578 FRAT2O75474 233 aaPredicted RBP17.14■□□□□ 0.33
COL4A3-202ENST00000396578 NLRP13Q86W25 1043 aa17.13■□□□□ 0.33
COL4A3-202ENST00000396578 MCTP1Q6DN14 999 aa17.13■□□□□ 0.33
COL4A3-202ENST00000396578 AK7Q96M32 723 aa17.13■□□□□ 0.33
COL4A3-202ENST00000396578 PCMTD1Q96MG8 357 aaPredicted RBP17.13■□□□□ 0.33
COL4A3-202ENST00000396578 FOXD1Q16676 465 aa17.13■□□□□ 0.33
COL4A3-202ENST00000396578 RUFY1Q96T51 708 aa17.13■□□□□ 0.33
COL4A3-202ENST00000396578 ERCC6Q03468 1493 aa17.12■□□□□ 0.33
COL4A3-202ENST00000396578 PDE4AP27815 886 aa17.12■□□□□ 0.33
COL4A3-202ENST00000396578 ANKRD45Q5TZF3 282 aa17.12■□□□□ 0.33
COL4A3-202ENST00000396578 KIF15Q9NS87 1388 aa17.12■□□□□ 0.33
COL4A3-202ENST00000396578 MLECQ14165 292 aa17.11■□□□□ 0.33
COL4A3-202ENST00000396578 LRRFIP1Q32MZ4 808 aaKnown RBP17.11■□□□□ 0.33
COL4A3-202ENST00000396578 SYNE3Q6ZMZ3 975 aa17.1■□□□□ 0.33
COL4A3-202ENST00000396578 ACBD3Q9H3P7 528 aa17.1■□□□□ 0.33
COL4A3-202ENST00000396578 ARGLU1Q9NWB6 273 aaPredicted RBP17.1■□□□□ 0.33
COL4A3-202ENST00000396578 RAB3GAP2Q9H2M9 1393 aa17.1■□□□□ 0.33
COL4A3-202ENST00000396578 CDR1P51861 262 aa17.1■□□□□ 0.33
COL4A3-202ENST00000396578 TRIM29Q14134 588 aa17.1■□□□□ 0.33
COL4A3-202ENST00000396578 REC8O95072 547 aa17.08■□□□□ 0.32
COL4A3-202ENST00000396578 CCDC47Q96A33 483 aaKnown RBP17.08■□□□□ 0.32
COL4A3-202ENST00000396578 MPHOSPH9Q99550 1183 aa17.08■□□□□ 0.32
COL4A3-202ENST00000396578 TCEAL9Q9UHQ7 104 aa17.08■□□□□ 0.32
COL4A3-202ENST00000396578 CPLX2Q6PUV4 134 aaKnown RBP17.08■□□□□ 0.32
COL4A3-202ENST00000396578 VPS8Q8N3P4 1428 aa17.08■□□□□ 0.32
COL4A3-202ENST00000396578 FAM43AQ8N2R8 423 aa17.07■□□□□ 0.32
COL4A3-202ENST00000396578 SLC4A3P48751 1232 aa17.07■□□□□ 0.32
COL4A3-202ENST00000396578 RUFY2Q8WXA3 655 aa17.06■□□□□ 0.32
COL4A3-202ENST00000396578 DIAPH3Q9NSV4 1193 aa17.06■□□□□ 0.32
COL4A3-202ENST00000396578 NUP155O75694 1391 aa17.06■□□□□ 0.32
COL4A3-202ENST00000396578 GGT6Q6P531 493 aa17.05■□□□□ 0.32
COL4A3-202ENST00000396578 HSP90B2PQ58FF3 399 aa17.05■□□□□ 0.32
COL4A3-202ENST00000396578 MTERF4Q7Z6M4 381 aaKnown RBP17.04■□□□□ 0.32
COL4A3-202ENST00000396578 MYBBP1AQ9BQG0 1328 aaKnown RBP17.04■□□□□ 0.32
COL4A3-202ENST00000396578 WWC1Q8IX03 1113 aa17.04■□□□□ 0.32
COL4A3-202ENST00000396578 MAP7D2Q96T17 732 aa17.04■□□□□ 0.32
COL4A3-202ENST00000396578 FBXO3Q9UK99 471 aa17.04■□□□□ 0.32
COL4A3-202ENST00000396578 SASS6Q6UVJ0 657 aa17.04■□□□□ 0.32
COL4A3-202ENST00000396578 CWC15Q9P013 229 aaKnown RBP17.04■□□□□ 0.32
COL4A3-202ENST00000396578 ZKSCAN1P17029 563 aaPredicted RBP17.04■□□□□ 0.32
COL4A3-202ENST00000396578 AMPHP49418 695 aa17.04■□□□□ 0.32
COL4A3-202ENST00000396578 BICD2Q8TD16 824 aa17.03■□□□□ 0.32
COL4A3-202ENST00000396578 FMN1Q68DA7 1419 aa17.03■□□□□ 0.32
COL4A3-202ENST00000396578 FANCIQ9NVI1 1328 aa17.03■□□□□ 0.32
COL4A3-202ENST00000396578 ANKRD30AQ9BXX3 1397 aa17.03■□□□□ 0.32
COL4A3-202ENST00000396578 AMOTL1Q8IY63 956 aa17.02■□□□□ 0.32
COL4A3-202ENST00000396578 MNS1Q8NEH6 495 aa17.02■□□□□ 0.32
COL4A3-202ENST00000396578 IFT57Q9NWB7 429 aa17.02■□□□□ 0.32
COL4A3-202ENST00000396578 GTF2E1P29083 439 aaPredicted RBP17.02■□□□□ 0.32
COL4A3-202ENST00000396578 RRP1P56182 461 aaKnown RBP17.02■□□□□ 0.32
COL4A3-202ENST00000396578 CARMIL1Q5VZK9 1371 aa17.02■□□□□ 0.32
COL4A3-202ENST00000396578 ZKSCAN2Q63HK3 967 aa17.01■□□□□ 0.31
COL4A3-202ENST00000396578 CCDC9Q9Y3X0 531 aaKnown RBP17.01■□□□□ 0.31
COL4A3-202ENST00000396578 E9PSI1 815 aa17.01■□□□□ 0.31
COL4A3-202ENST00000396578 CHMP5Q9NZZ3 219 aa17.01■□□□□ 0.31
COL4A3-202ENST00000396578 ANO2Q9NQ90 1003 aa17■□□□□ 0.31
COL4A3-202ENST00000396578 CUX2O14529 1486 aa17■□□□□ 0.31
COL4A3-202ENST00000396578 CGNL1Q0VF96 1302 aa17■□□□□ 0.31
COL4A3-202ENST00000396578 DCTN1Q14203 1278 aa17■□□□□ 0.31
COL4A3-202ENST00000396578 CCDC191Q8NCU4 936 aa17■□□□□ 0.31
COL4A3-202ENST00000396578 NAP1L1P55209 391 aaKnown RBP16.99■□□□□ 0.31
COL4A3-202ENST00000396578 CPLX1O14810 134 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms