RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCDC70Q6NSX1 233 aa14.62□□□□□ -0.07
SYNPO-202ENST00000394243 GPATCH3Q96I76 525 aa14.62□□□□□ -0.07
SYNPO-202ENST00000394243 CHMP5Q9NZZ3 219 aa14.62□□□□□ -0.07
SYNPO-202ENST00000394243 RRP1P56182 461 aaKnown RBP14.61□□□□□ -0.07
SYNPO-202ENST00000394243 HOMER1Q86YM7 354 aa14.61□□□□□ -0.07
SYNPO-202ENST00000394243 HMMRO75330 724 aa14.61□□□□□ -0.07
SYNPO-202ENST00000394243 TPM2P07951 284 aa14.61□□□□□ -0.07
SYNPO-202ENST00000394243 TSR1Q2NL82 804 aaKnown RBP14.61□□□□□ -0.07
SYNPO-202ENST00000394243 BAZ1BQ9UIG0 1483 aaKnown RBP14.61□□□□□ -0.07
SYNPO-202ENST00000394243 H3BQV1 296 aa14.6□□□□□ -0.07
SYNPO-202ENST00000394243 TPD52L1Q16890 204 aaPredicted RBP14.6□□□□□ -0.07
SYNPO-202ENST00000394243 IFFO2Q5TF58 517 aa14.6□□□□□ -0.07
SYNPO-202ENST00000394243 ATP6V1DQ9Y5K8 247 aa14.6□□□□□ -0.07
SYNPO-202ENST00000394243 RBM10P98175 930 aaKnown RBP14.6□□□□□ -0.07
SYNPO-202ENST00000394243 SAFB2Q14151 953 aaKnown RBP eCLIP14.59□□□□□ -0.07
SYNPO-202ENST00000394243 CEP89Q96ST8 783 aa14.59□□□□□ -0.07
SYNPO-202ENST00000394243 CCDC66A2RUB6 948 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 MRE11P49959 708 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 ANKRD45Q5TZF3 282 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 IFT57Q9NWB7 429 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 CHMP3Q9Y3E7 222 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 SLC4A10Q6U841 1118 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 KIF3AQ9Y496 699 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 ROCK2O75116 1388 aaKnown RBP14.57□□□□□ -0.08
SYNPO-202ENST00000394243 TPM1P09493 284 aa14.57□□□□□ -0.08
SYNPO-202ENST00000394243 ARGLU1Q9NWB6 273 aaPredicted RBP14.56□□□□□ -0.08
SYNPO-202ENST00000394243 RAB3GAP2Q9H2M9 1393 aa14.56□□□□□ -0.08
SYNPO-202ENST00000394243 NLRP13Q86W25 1043 aa14.56□□□□□ -0.08
SYNPO-202ENST00000394243 DIAPH3Q9NSV4 1193 aa14.56□□□□□ -0.08
SYNPO-202ENST00000394243 NASPP49321 788 aaPredicted RBP14.56□□□□□ -0.08
SYNPO-202ENST00000394243 TAF7LQ5H9L4 462 aa14.56□□□□□ -0.08
SYNPO-202ENST00000394243 PRM3Q9NNZ6 103 aa14.56□□□□□ -0.08
SYNPO-202ENST00000394243 MCTP1Q6DN14 999 aa14.56□□□□□ -0.08
SYNPO-202ENST00000394243 RILPL2Q969X0 211 aa14.55□□□□□ -0.08
SYNPO-202ENST00000394243 FAM184AQ8NB25 1140 aa14.55□□□□□ -0.08
SYNPO-202ENST00000394243 ZBED9Q6R2W3 1325 aa14.54□□□□□ -0.08
SYNPO-202ENST00000394243 GORABQ5T7V8 394 aa14.54□□□□□ -0.08
SYNPO-202ENST00000394243 CWC15Q9P013 229 aaKnown RBP14.54□□□□□ -0.08
SYNPO-202ENST00000394243 STK31Q9BXU1 1019 aa14.54□□□□□ -0.08
SYNPO-202ENST00000394243 CCDC39Q9UFE4 941 aa14.54□□□□□ -0.08
SYNPO-202ENST00000394243 RRP12Q5JTH9 1297 aaKnown RBP14.54□□□□□ -0.08
SYNPO-202ENST00000394243 MNS1Q8NEH6 495 aa14.54□□□□□ -0.08
SYNPO-202ENST00000394243 WRNQ14191 1432 aaPredicted RBP eCLIP14.53□□□□□ -0.08
SYNPO-202ENST00000394243 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.53□□□□□ -0.08
SYNPO-202ENST00000394243 BCL2L13Q9BXK5 485 aa14.52□□□□□ -0.08
SYNPO-202ENST00000394243 PKD2Q13563 968 aa14.52□□□□□ -0.09
SYNPO-202ENST00000394243 HSP90B2PQ58FF3 399 aa14.51□□□□□ -0.09
SYNPO-202ENST00000394243 AK7Q96M32 723 aa14.51□□□□□ -0.09
SYNPO-202ENST00000394243 COG6Q9Y2V7 657 aa14.51□□□□□ -0.09
SYNPO-202ENST00000394243 RUFY1Q96T51 708 aa14.5□□□□□ -0.09
SYNPO-202ENST00000394243 ACBD3Q9H3P7 528 aa14.5□□□□□ -0.09
SYNPO-202ENST00000394243 PHLDB1Q86UU1 1377 aa14.5□□□□□ -0.09
SYNPO-202ENST00000394243 H0YHG0 523 aa14.5□□□□□ -0.09
SYNPO-202ENST00000394243 HDGFL2Q7Z4V5 671 aaPredicted RBP14.5□□□□□ -0.09
SYNPO-202ENST00000394243 KIF27Q86VH2 1401 aa14.5□□□□□ -0.09
SYNPO-202ENST00000394243 RDXP35241 583 aaKnown RBP14.49□□□□□ -0.09
SYNPO-202ENST00000394243 RRP7AQ9Y3A4 280 aaKnown RBP14.49□□□□□ -0.09
SYNPO-202ENST00000394243 TRAK2O60296 914 aa14.49□□□□□ -0.09
SYNPO-202ENST00000394243 BICD2Q8TD16 824 aa14.48□□□□□ -0.09
SYNPO-202ENST00000394243 MPHOSPH9Q99550 1183 aa14.48□□□□□ -0.09
SYNPO-202ENST00000394243 IPO7O95373 1038 aaKnown RBP14.48□□□□□ -0.09
SYNPO-202ENST00000394243 NUCB2P80303 420 aa14.48□□□□□ -0.09
SYNPO-202ENST00000394243 SASS6Q6UVJ0 657 aa14.48□□□□□ -0.09
SYNPO-202ENST00000394243 RNF214Q8ND24 703 aa14.48□□□□□ -0.09
SYNPO-202ENST00000394243 FBXW7Q969H0 707 aa14.48□□□□□ -0.09
SYNPO-202ENST00000394243 MYBBP1AQ9BQG0 1328 aaKnown RBP14.48□□□□□ -0.09
SYNPO-202ENST00000394243 STK26Q9P289 416 aa14.47□□□□□ -0.09
SYNPO-202ENST00000394243 FHAD1B1AJZ9 1412 aa14.47□□□□□ -0.09
SYNPO-202ENST00000394243 KANK4Q5T7N3 995 aaPredicted RBP14.47□□□□□ -0.09
SYNPO-202ENST00000394243 KIF15Q9NS87 1388 aa14.47□□□□□ -0.09
SYNPO-202ENST00000394243 SPAG9O60271 1321 aaKnown RBP14.47□□□□□ -0.09
SYNPO-202ENST00000394243 PCMTD1Q96MG8 357 aaPredicted RBP14.47□□□□□ -0.09
SYNPO-202ENST00000394243 ARHGAP35Q9NRY4 1499 aa14.47□□□□□ -0.09
SYNPO-202ENST00000394243 TOMM22Q9NS69 142 aa14.46□□□□□ -0.09
SYNPO-202ENST00000394243 CGNL1Q0VF96 1302 aa14.46□□□□□ -0.09
SYNPO-202ENST00000394243 RRP9O43818 475 aaKnown RBP14.46□□□□□ -0.09
SYNPO-202ENST00000394243 FRAT2O75474 233 aaPredicted RBP14.46□□□□□ -0.09
SYNPO-202ENST00000394243 ZNF330Q9Y3S2 320 aaPredicted RBP14.45□□□□□ -0.1
SYNPO-202ENST00000394243 PAK3O75914 559 aaPredicted RBP14.45□□□□□ -0.1
SYNPO-202ENST00000394243 REC8O95072 547 aa14.45□□□□□ -0.1
SYNPO-202ENST00000394243 ZKSCAN2Q63HK3 967 aa14.45□□□□□ -0.1
SYNPO-202ENST00000394243 L3MBTL2Q969R5 705 aa14.45□□□□□ -0.1
SYNPO-202ENST00000394243 C22orf23Q9BZE7 217 aa14.44□□□□□ -0.1
SYNPO-202ENST00000394243 MAPK8IP2Q13387 824 aaPredicted RBP14.44□□□□□ -0.1
SYNPO-202ENST00000394243 PRKRIP1Q9H875 184 aaPredicted RBP14.44□□□□□ -0.1
SYNPO-202ENST00000394243 HDAC5Q9UQL6 1122 aa14.44□□□□□ -0.1
SYNPO-202ENST00000394243 VPS8Q8N3P4 1428 aa14.43□□□□□ -0.1
SYNPO-202ENST00000394243 CCDC191Q8NCU4 936 aa14.43□□□□□ -0.1
SYNPO-202ENST00000394243 CCDC173Q0VFZ6 552 aa14.43□□□□□ -0.1
SYNPO-202ENST00000394243 MARCH6O60337 910 aa14.43□□□□□ -0.1
SYNPO-202ENST00000394243 E9PSI1 815 aa14.42□□□□□ -0.1
SYNPO-202ENST00000394243 CDR1P51861 262 aa14.42□□□□□ -0.1
SYNPO-202ENST00000394243 KANK1Q14678 1352 aa14.42□□□□□ -0.1
SYNPO-202ENST00000394243 HMGN5P82970 282 aaKnown RBP14.42□□□□□ -0.1
SYNPO-202ENST00000394243 CAVIN1Q6NZI2 390 aaKnown RBP14.42□□□□□ -0.1
SYNPO-202ENST00000394243 LEKR1Q6ZMV7 388 aa14.42□□□□□ -0.1
SYNPO-202ENST00000394243 VPS37CA5D8V6 355 aaPredicted RBP14.42□□□□□ -0.1
SYNPO-202ENST00000394243 HSP90AB3PQ58FF7 597 aa14.42□□□□□ -0.1
SYNPO-202ENST00000394243 ANKRD20A12PQ8NF67 263 aa14.41□□□□□ -0.1
SYNPO-202ENST00000394243 CHMP4CQ96CF2 233 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms