RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 SF3A1Q15459 793 aaKnown RBP18.15■□□□□ 0.5
CCDC50-201ENST00000392455 ARHGAP35Q9NRY4 1499 aa18.14■□□□□ 0.49
CCDC50-201ENST00000392455 ITPRIPQ8IWB1 547 aa18.14■□□□□ 0.49
CCDC50-201ENST00000392455 ROCK2O75116 1388 aaKnown RBP18.12■□□□□ 0.49
CCDC50-201ENST00000392455 HSP90B2PQ58FF3 399 aa18.12■□□□□ 0.49
CCDC50-201ENST00000392455 CHMP3Q9Y3E7 222 aa18.11■□□□□ 0.49
CCDC50-201ENST00000392455 G3V3G9 751 aa18.11■□□□□ 0.49
CCDC50-201ENST00000392455 DCAF8Q5TAQ9 597 aa18.11■□□□□ 0.49
CCDC50-201ENST00000392455 ERCC4Q92889 916 aaPredicted RBP18.1■□□□□ 0.49
CCDC50-201ENST00000392455 AKAP17AQ02040 695 aaKnown RBP18.1■□□□□ 0.49
CCDC50-201ENST00000392455 FOXD1Q16676 465 aa18.1■□□□□ 0.49
CCDC50-201ENST00000392455 APPP05067 770 aa18.09■□□□□ 0.49
CCDC50-201ENST00000392455 BECN2A8MW95 431 aa18.09■□□□□ 0.49
CCDC50-201ENST00000392455 PES1O00541 588 aaKnown RBP18.09■□□□□ 0.49
CCDC50-201ENST00000392455 U2AF1L5P0DN76 240 aaPredicted RBP18.09■□□□□ 0.49
CCDC50-201ENST00000392455 U2AF1Q01081 240 aaKnown RBP eCLIP18.09■□□□□ 0.49
CCDC50-201ENST00000392455 HSPA5P11021 654 aaKnown RBP18.09■□□□□ 0.49
CCDC50-201ENST00000392455 AMOTL1Q8IY63 956 aa18.09■□□□□ 0.49
CCDC50-201ENST00000392455 CUX2O14529 1486 aa18.09■□□□□ 0.49
CCDC50-201ENST00000392455 ODF2Q5BJF6 829 aa18.08■□□□□ 0.49
CCDC50-201ENST00000392455 CNKSR2Q8WXI2 1034 aa18.08■□□□□ 0.49
CCDC50-201ENST00000392455 TAF7LQ5H9L4 462 aa18.08■□□□□ 0.48
CCDC50-201ENST00000392455 CPLX2Q6PUV4 134 aaKnown RBP18.08■□□□□ 0.48
CCDC50-201ENST00000392455 INCENPQ9NQS7 918 aa18.08■□□□□ 0.48
CCDC50-201ENST00000392455 PHLDB1Q86UU1 1377 aa18.08■□□□□ 0.48
CCDC50-201ENST00000392455 CCDC9Q9Y3X0 531 aaKnown RBP18.07■□□□□ 0.48
CCDC50-201ENST00000392455 SETD5Q9C0A6 1442 aa18.07■□□□□ 0.48
CCDC50-201ENST00000392455 GZF1Q9H116 711 aaPredicted RBP18.06■□□□□ 0.48
CCDC50-201ENST00000392455 H3BQV1 296 aa18.06■□□□□ 0.48
CCDC50-201ENST00000392455 IFFO2Q5TF58 517 aa18.06■□□□□ 0.48
CCDC50-201ENST00000392455 PKD2Q13563 968 aa18.06■□□□□ 0.48
CCDC50-201ENST00000392455 VPS53Q5VIR6 699 aa18.06■□□□□ 0.48
CCDC50-201ENST00000392455 CCDC66A2RUB6 948 aa18.05■□□□□ 0.48
CCDC50-201ENST00000392455 PATL2C9JE40 543 aaKnown RBP18.05■□□□□ 0.48
CCDC50-201ENST00000392455 CREBRFQ8IUR6 639 aa18.05■□□□□ 0.48
CCDC50-201ENST00000392455 CARMIL1Q5VZK9 1371 aa18.05■□□□□ 0.48
CCDC50-201ENST00000392455 ANKRD18AQ8IVF6 992 aa18.05■□□□□ 0.48
CCDC50-201ENST00000392455 GOLGA6L7A0A1B0GV03 622 aa18.05■□□□□ 0.48
CCDC50-201ENST00000392455 CCAR2Q8N163 923 aaKnown RBP18.05■□□□□ 0.48
CCDC50-201ENST00000392455 STK31Q9BXU1 1019 aa18.05■□□□□ 0.48
CCDC50-201ENST00000392455 TRIM6-TRIM34B2RNG4 842 aa18.05■□□□□ 0.48
CCDC50-201ENST00000392455 DHX8Q14562 1220 aaKnown RBP18.04■□□□□ 0.48
CCDC50-201ENST00000392455 WWC1Q8IX03 1113 aa18.04■□□□□ 0.48
CCDC50-201ENST00000392455 PDE4CQ08493 712 aa18.04■□□□□ 0.48
CCDC50-201ENST00000392455 EIF3AQ14152 1382 aaKnown RBP18.04■□□□□ 0.48
CCDC50-201ENST00000392455 BAZ1AQ9NRL2 1556 aaPredicted RBP18.03■□□□□ 0.48
CCDC50-201ENST00000392455 LMOD3Q0VAK6 560 aa18.03■□□□□ 0.48
CCDC50-201ENST00000392455 RCAN3Q9UKA8 241 aa18.03■□□□□ 0.48
CCDC50-201ENST00000392455 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.02■□□□□ 0.481e-6■■■■■ 99.3
CCDC50-201ENST00000392455 SYNE3Q6ZMZ3 975 aa18.02■□□□□ 0.47
CCDC50-201ENST00000392455 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.01■□□□□ 0.47
CCDC50-201ENST00000392455 CCER2I3L3R5 266 aa18.01■□□□□ 0.47
CCDC50-201ENST00000392455 ARID3AQ99856 593 aa18.01■□□□□ 0.47
CCDC50-201ENST00000392455 TIMELESSQ9UNS1 1208 aa18.01■□□□□ 0.47
CCDC50-201ENST00000392455 CT47A1Q5JQC4 288 aaPredicted RBP18.01■□□□□ 0.47
CCDC50-201ENST00000392455 SLKQ9H2G2 1235 aaPredicted RBP18.01■□□□□ 0.47
CCDC50-201ENST00000392455 H0YHG0 523 aa17.99■□□□□ 0.47
CCDC50-201ENST00000392455 MFAP1P55081 439 aaKnown RBP17.99■□□□□ 0.47
CCDC50-201ENST00000392455 FAM184AQ8NB25 1140 aa17.98■□□□□ 0.47
CCDC50-201ENST00000392455 SMC4Q9NTJ3 1288 aa17.98■□□□□ 0.47
CCDC50-201ENST00000392455 TRIM29Q14134 588 aa17.98■□□□□ 0.47
CCDC50-201ENST00000392455 NOL10Q9BSC4 688 aaKnown RBP17.97■□□□□ 0.47
CCDC50-201ENST00000392455 CCP110O43303 1012 aa17.97■□□□□ 0.47
CCDC50-201ENST00000392455 SLC4A10Q6U841 1118 aa17.97■□□□□ 0.47
CCDC50-201ENST00000392455 CARMIL2Q6F5E8 1435 aa17.96■□□□□ 0.47
CCDC50-201ENST00000392455 RALBP1Q15311 655 aa17.96■□□□□ 0.47
CCDC50-201ENST00000392455 TXLNBQ8N3L3 684 aa17.96■□□□□ 0.46
CCDC50-201ENST00000392455 NAT10Q9H0A0 1025 aaKnown RBP17.96■□□□□ 0.46
CCDC50-201ENST00000392455 USP8P40818 1118 aa17.95■□□□□ 0.46
CCDC50-201ENST00000392455 CCDC43Q96MW1 224 aaKnown RBP17.95■□□□□ 0.46
CCDC50-201ENST00000392455 R3HCC1Q9Y3T6 440 aaKnown RBP17.95■□□□□ 0.46
CCDC50-201ENST00000392455 RBM19Q9Y4C8 960 aaKnown RBP17.95■□□□□ 0.46
CCDC50-201ENST00000392455 CTDP1Q9Y5B0 961 aaPredicted RBP17.95■□□□□ 0.46
CCDC50-201ENST00000392455 NOL8Q76FK4 1167 aaKnown RBP17.95■□□□□ 0.46
CCDC50-201ENST00000392455 DIAPH3Q9NSV4 1193 aa17.95■□□□□ 0.46
CCDC50-201ENST00000392455 PCMTD1Q96MG8 357 aaPredicted RBP17.95■□□□□ 0.46
CCDC50-201ENST00000392455 TRIM34Q9BYJ4 488 aa17.94■□□□□ 0.46
CCDC50-201ENST00000392455 NUP155O75694 1391 aa17.94■□□□□ 0.46
CCDC50-201ENST00000392455 ERLIN2O94905 339 aa17.94■□□□□ 0.46
CCDC50-201ENST00000392455 HOMER1Q86YM7 354 aa17.94■□□□□ 0.46
CCDC50-201ENST00000392455 CCDC146Q8IYE0 955 aa17.94■□□□□ 0.46
CCDC50-201ENST00000392455 EZRP15311 586 aaKnown RBP17.93■□□□□ 0.46
CCDC50-201ENST00000392455 NUTM2DQ5VT03 806 aaPredicted RBP17.93■□□□□ 0.46
CCDC50-201ENST00000392455 ABCC8Q09428 1581 aa17.92■□□□□ 0.46
CCDC50-201ENST00000392455 FOXD4L1Q9NU39 408 aa17.92■□□□□ 0.46
CCDC50-201ENST00000392455 RUFY2Q8WXA3 655 aa17.91■□□□□ 0.46
CCDC50-201ENST00000392455 SOGA1O94964 1423 aa17.91■□□□□ 0.46
CCDC50-201ENST00000392455 MPHOSPH9Q99550 1183 aa17.91■□□□□ 0.46
CCDC50-201ENST00000392455 TERF2IPQ9NYB0 399 aa17.91■□□□□ 0.46
CCDC50-201ENST00000392455 NGDNQ8NEJ9 315 aaKnown RBP17.9■□□□□ 0.46
CCDC50-201ENST00000392455 IPO9Q96P70 1041 aaKnown RBP17.9■□□□□ 0.46
CCDC50-201ENST00000392455 EPS15P42566 896 aa17.9■□□□□ 0.46
CCDC50-201ENST00000392455 LTV1Q96GA3 475 aaPredicted RBP17.9■□□□□ 0.46
CCDC50-201ENST00000392455 FRAT2O75474 233 aaPredicted RBP17.9■□□□□ 0.46
CCDC50-201ENST00000392455 FEZ1Q99689 392 aa17.9■□□□□ 0.46
CCDC50-201ENST00000392455 AMPHP49418 695 aa17.9■□□□□ 0.46
CCDC50-201ENST00000392455 EID1Q9Y6B2 187 aa17.9■□□□□ 0.46
CCDC50-201ENST00000392455 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.89■□□□□ 0.45
CCDC50-201ENST00000392455 TOMM22Q9NS69 142 aa17.89■□□□□ 0.45
CCDC50-201ENST00000392455 NEFHP12036 1026 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms