RNA–Protein interactions for RNA: ENST00000379053.4

LINC00654-201, long intergenic non-protein coding RNA 654, humanhuman

TSL 1 (best) BASIC

Gene LINC00654, Length 6,113 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00654-201ENST00000379053 VPS53Q5VIR6 699 aa13.71□□□□□ -0.21
LINC00654-201ENST00000379053 SYTL4Q96C24 671 aaPredicted RBP13.71□□□□□ -0.21
LINC00654-201ENST00000379053 RASSF8Q8NHQ8 419 aa13.71□□□□□ -0.21
LINC00654-201ENST00000379053 DMRT2Q9Y5R5 561 aa13.71□□□□□ -0.21
LINC00654-201ENST00000379053 VGFO15240 615 aaPredicted RBP13.71□□□□□ -0.21
LINC00654-201ENST00000379053 PTPRGP23470 1445 aa13.71□□□□□ -0.22
LINC00654-201ENST00000379053 CCDC18Q5T9S5 1454 aa13.71□□□□□ -0.22
LINC00654-201ENST00000379053 L1TD1Q5T7N2 865 aaKnown RBP13.71□□□□□ -0.22
LINC00654-201ENST00000379053 COG3Q96JB2 828 aa13.71□□□□□ -0.22
LINC00654-201ENST00000379053 PRM3Q9NNZ6 103 aa13.7□□□□□ -0.22
LINC00654-201ENST00000379053 HTATSF1O43719 755 aaKnown RBP13.7□□□□□ -0.22
LINC00654-201ENST00000379053 AMER1Q5JTC6 1135 aaPredicted RBP13.69□□□□□ -0.22
LINC00654-201ENST00000379053 TTC5Q8N0Z6 440 aa13.69□□□□□ -0.22
LINC00654-201ENST00000379053 FHOD3Q2V2M9 1422 aa13.69□□□□□ -0.22
LINC00654-201ENST00000379053 MARCH6O60337 910 aa13.68□□□□□ -0.22
LINC00654-201ENST00000379053 TEFQ10587 303 aa13.68□□□□□ -0.22
LINC00654-201ENST00000379053 CCDC146Q8IYE0 955 aa13.68□□□□□ -0.22
LINC00654-201ENST00000379053 PSME1Q06323 249 aa13.68□□□□□ -0.22
LINC00654-201ENST00000379053 CCDC34Q96HJ3 373 aa13.67□□□□□ -0.22
LINC00654-201ENST00000379053 RCAN3Q9UKA8 241 aa13.67□□□□□ -0.22
LINC00654-201ENST00000379053 CLUAP1Q96AJ1 413 aa13.66□□□□□ -0.22
LINC00654-201ENST00000379053 NGEFQ8N5V2 710 aa13.66□□□□□ -0.22
LINC00654-201ENST00000379053 MINK1Q8N4C8 1332 aaPredicted RBP13.66□□□□□ -0.22
LINC00654-201ENST00000379053 CCER2I3L3R5 266 aa13.66□□□□□ -0.22
LINC00654-201ENST00000379053 L3MBTL2Q969R5 705 aa13.65□□□□□ -0.22
LINC00654-201ENST00000379053 ABCC8Q09428 1581 aa13.65□□□□□ -0.22
LINC00654-201ENST00000379053 CWC22Q9HCG8 908 aaKnown RBP13.65□□□□□ -0.22
LINC00654-201ENST00000379053 RAB3GAP2Q9H2M9 1393 aa13.65□□□□□ -0.22
LINC00654-201ENST00000379053 TRIM34Q9BYJ4 488 aa13.65□□□□□ -0.23
LINC00654-201ENST00000379053 RAPGEF2Q9Y4G8 1499 aa13.64□□□□□ -0.23
LINC00654-201ENST00000379053 MROH2BQ7Z745 1585 aa13.64□□□□□ -0.23
LINC00654-201ENST00000379053 PPP1R1BQ9UD71 204 aaPredicted RBP13.64□□□□□ -0.23
LINC00654-201ENST00000379053 UACAQ9BZF9 1416 aa13.64□□□□□ -0.23
LINC00654-201ENST00000379053 EVC2Q86UK5 1308 aa13.64□□□□□ -0.23
LINC00654-201ENST00000379053 PMFBP1Q8TBY8 1022 aa13.63□□□□□ -0.23
LINC00654-201ENST00000379053 NOL10Q9BSC4 688 aaKnown RBP13.63□□□□□ -0.23
LINC00654-201ENST00000379053 CCDC144AA2RUR9 1427 aa13.63□□□□□ -0.23
LINC00654-201ENST00000379053 NOP58Q9Y2X3 529 aaKnown RBP13.63□□□□□ -0.23
LINC00654-201ENST00000379053 CTDP1Q9Y5B0 961 aaPredicted RBP13.63□□□□□ -0.23
LINC00654-201ENST00000379053 POGZQ7Z3K3 1410 aa13.62□□□□□ -0.23
LINC00654-201ENST00000379053 RAD21O60216 631 aa13.62□□□□□ -0.23
LINC00654-201ENST00000379053 ELL2O00472 640 aaPredicted RBP13.62□□□□□ -0.23
LINC00654-201ENST00000379053 NEXNQ0ZGT2 675 aa13.62□□□□□ -0.23
LINC00654-201ENST00000379053 FBXW7Q969H0 707 aa13.61□□□□□ -0.23
LINC00654-201ENST00000379053 PIP4K2BP78356 416 aa13.61□□□□□ -0.23
LINC00654-201ENST00000379053 PDE4CQ08493 712 aa13.61□□□□□ -0.23
LINC00654-201ENST00000379053 RRP7AQ9Y3A4 280 aaKnown RBP13.61□□□□□ -0.23
LINC00654-201ENST00000379053 CENPJQ9HC77 1338 aaPredicted RBP13.61□□□□□ -0.23
LINC00654-201ENST00000379053 NOC3LQ8WTT2 800 aaKnown RBP13.6□□□□□ -0.23
LINC00654-201ENST00000379053 EIF2S2P20042 333 aaKnown RBP13.6□□□□□ -0.23
LINC00654-201ENST00000379053 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.6□□□□□ -0.23
LINC00654-201ENST00000379053 ANO8Q9HCE9 1232 aaPredicted RBP13.6□□□□□ -0.23
LINC00654-201ENST00000379053 NOL8Q76FK4 1167 aaKnown RBP13.6□□□□□ -0.23
LINC00654-201ENST00000379053 NLRP13Q86W25 1043 aa13.6□□□□□ -0.23
LINC00654-201ENST00000379053 AMOTL1Q8IY63 956 aa13.6□□□□□ -0.23
LINC00654-201ENST00000379053 CGNL1Q0VF96 1302 aa13.59□□□□□ -0.23
LINC00654-201ENST00000379053 MFAP1P55081 439 aaKnown RBP13.59□□□□□ -0.23
LINC00654-201ENST00000379053 CREBRFQ8IUR6 639 aa13.59□□□□□ -0.23
LINC00654-201ENST00000379053 DEKP35659 375 aaKnown RBP13.59□□□□□ -0.23
LINC00654-201ENST00000379053 TPM4P67936 248 aa13.59□□□□□ -0.23
LINC00654-201ENST00000379053 GBP4Q96PP9 640 aa13.58□□□□□ -0.23
LINC00654-201ENST00000379053 VPS37DQ86XT2 251 aa13.58□□□□□ -0.24
LINC00654-201ENST00000379053 TCEAL9Q9UHQ7 104 aa13.58□□□□□ -0.24
LINC00654-201ENST00000379053 MSNP26038 577 aaKnown RBP13.57□□□□□ -0.24
LINC00654-201ENST00000379053 KIF3AQ9Y496 699 aa13.56□□□□□ -0.24
LINC00654-201ENST00000379053 AKAP17AQ02040 695 aaKnown RBP13.56□□□□□ -0.24
LINC00654-201ENST00000379053 RAPGEF4Q8WZA2 1011 aa13.56□□□□□ -0.24
LINC00654-201ENST00000379053 PANK3Q9H999 370 aa13.56□□□□□ -0.24
LINC00654-201ENST00000379053 C9orf78Q9NZ63 289 aaPredicted RBP13.56□□□□□ -0.24
LINC00654-201ENST00000379053 ST20-MTHFSA0A0A6YYL1 179 aa13.55□□□□□ -0.24
LINC00654-201ENST00000379053 CEP89Q96ST8 783 aa13.55□□□□□ -0.24
LINC00654-201ENST00000379053 FANCD2Q9BXW9 1451 aa13.55□□□□□ -0.24
LINC00654-201ENST00000379053 KIF16BQ96L93 1317 aa13.54□□□□□ -0.24
LINC00654-201ENST00000379053 SYAP1Q96A49 352 aaPredicted RBP13.54□□□□□ -0.24
LINC00654-201ENST00000379053 SF3A1Q15459 793 aaKnown RBP13.54□□□□□ -0.24
LINC00654-201ENST00000379053 NLRP2Q9NX02 1062 aa13.54□□□□□ -0.24
LINC00654-201ENST00000379053 LRRFIP1Q32MZ4 808 aaKnown RBP13.53□□□□□ -0.24
LINC00654-201ENST00000379053 RILPL2Q969X0 211 aa13.53□□□□□ -0.24
LINC00654-201ENST00000379053 RBM33Q96EV2 1170 aaKnown RBP13.53□□□□□ -0.24
LINC00654-201ENST00000379053 SLKQ9H2G2 1235 aaPredicted RBP13.53□□□□□ -0.24
LINC00654-201ENST00000379053 SYNE3Q6ZMZ3 975 aa13.53□□□□□ -0.24
LINC00654-201ENST00000379053 NECTIN2Q92692 538 aa13.52□□□□□ -0.24
LINC00654-201ENST00000379053 DDX58O95786 925 aaKnown RBP13.52□□□□□ -0.24
LINC00654-201ENST00000379053 PTMSP20962 102 aa13.52□□□□□ -0.25
LINC00654-201ENST00000379053 DHX16O60231 1041 aaKnown RBP13.52□□□□□ -0.25
LINC00654-201ENST00000379053 CSPP1Q1MSJ5 1256 aa13.51□□□□□ -0.25
LINC00654-201ENST00000379053 PHLDB1Q86UU1 1377 aa13.51□□□□□ -0.25
LINC00654-201ENST00000379053 PROSER2Q86WR7 435 aaPredicted RBP13.51□□□□□ -0.25
LINC00654-201ENST00000379053 DIAPH1O60610 1272 aaKnown RBP13.5□□□□□ -0.25
LINC00654-201ENST00000379053 APPP05067 770 aa13.5□□□□□ -0.25
LINC00654-201ENST00000379053 BCL2L13Q9BXK5 485 aa13.5□□□□□ -0.25
LINC00654-201ENST00000379053 TCERG1O14776 1098 aaKnown RBP13.5□□□□□ -0.25
LINC00654-201ENST00000379053 NUTM2BA6NNL0 878 aaPredicted RBP13.5□□□□□ -0.25
LINC00654-201ENST00000379053 NUTM2EB1AL46 878 aaPredicted RBP13.5□□□□□ -0.25
LINC00654-201ENST00000379053 NUTM2GQ5VZR2 741 aa13.5□□□□□ -0.25
LINC00654-201ENST00000379053 NUTM2AQ8IVF1 878 aaPredicted RBP13.5□□□□□ -0.25
LINC00654-201ENST00000379053 USP35Q9P2H5 1018 aa13.5□□□□□ -0.25
LINC00654-201ENST00000379053 WWC1Q8IX03 1113 aa13.49□□□□□ -0.25
LINC00654-201ENST00000379053 H3BQV1 296 aa13.49□□□□□ -0.25
LINC00654-201ENST00000379053 PES1O00541 588 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms