RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 PLEKHH2Q8IVE3 1493 aa13.56□□□□□ -0.24
TRIM39-202ENST00000376659 TRIM52Q96A61 297 aa13.56□□□□□ -0.24
TRIM39-202ENST00000376659 A2MP01023 1474 aa13.55□□□□□ -0.24
TRIM39-202ENST00000376659 PLCH2O75038 1416 aa13.55□□□□□ -0.24
TRIM39-202ENST00000376659 TET3O43151 1660 aa13.54□□□□□ -0.24
TRIM39-202ENST00000376659 MYOM1P52179 1685 aa13.54□□□□□ -0.24
TRIM39-202ENST00000376659 PRAG1Q86YV5 1406 aa13.54□□□□□ -0.24
TRIM39-202ENST00000376659 EIF4G2P78344 907 aaKnown RBP eCLIP13.53□□□□□ -0.24
TRIM39-202ENST00000376659 SLC4A1APQ9BWU0 796 aaKnown RBP13.53□□□□□ -0.24
TRIM39-202ENST00000376659 KIAA1210Q9ULL0 1709 aa13.53□□□□□ -0.24
TRIM39-202ENST00000376659 TRPM2O94759 1503 aa13.53□□□□□ -0.24
TRIM39-202ENST00000376659 CLTCL1P53675 1640 aa13.53□□□□□ -0.24
TRIM39-202ENST00000376659 GPRASP1Q5JY77 1395 aa13.52□□□□□ -0.24
TRIM39-202ENST00000376659 PLEKHD1A6NEE1 506 aa13.52□□□□□ -0.25
TRIM39-202ENST00000376659 ANP32CO43423 234 aa13.52□□□□□ -0.25
TRIM39-202ENST00000376659 CCDC184Q52MB2 194 aa13.52□□□□□ -0.25
TRIM39-202ENST00000376659 USP47Q96K76 1375 aa13.51□□□□□ -0.25
TRIM39-202ENST00000376659 FBLN2P98095 1184 aa13.51□□□□□ -0.25
TRIM39-202ENST00000376659 KIDINS220Q9ULH0 1771 aa13.5□□□□□ -0.25
TRIM39-202ENST00000376659 PKD2Q13563 968 aa13.5□□□□□ -0.25
TRIM39-202ENST00000376659 MROH2AA6NES4 1674 aa13.49□□□□□ -0.25
TRIM39-202ENST00000376659 BCL11AQ9H165 835 aa13.49□□□□□ -0.25
TRIM39-202ENST00000376659 NUP155O75694 1391 aa13.49□□□□□ -0.25
TRIM39-202ENST00000376659 PRKRIP1Q9H875 184 aaPredicted RBP13.48□□□□□ -0.25
TRIM39-202ENST00000376659 HNRNPMP52272 730 aaKnown RBP eCLIP13.47□□□□□ -0.25
TRIM39-202ENST00000376659 ARID4BQ4LE39 1312 aaPredicted RBP13.47□□□□□ -0.25
TRIM39-202ENST00000376659 ZC3H13Q5T200 1668 aaKnown RBP13.47□□□□□ -0.25
TRIM39-202ENST00000376659 RTEL1-TNFRSF6BF6WH68 1400 aa13.47□□□□□ -0.25
TRIM39-202ENST00000376659 TRAPPC8Q9Y2L5 1435 aa13.47□□□□□ -0.25
TRIM39-202ENST00000376659 COL17A1Q9UMD9 1497 aaPredicted RBP13.46□□□□□ -0.25
TRIM39-202ENST00000376659 WDR7Q9Y4E6 1490 aa13.46□□□□□ -0.25
TRIM39-202ENST00000376659 MYO3AQ8NEV4 1616 aa13.45□□□□□ -0.26
TRIM39-202ENST00000376659 PTPRTO14522 1441 aa13.45□□□□□ -0.26
TRIM39-202ENST00000376659 ATP7AQ04656 1500 aa13.45□□□□□ -0.26
TRIM39-202ENST00000376659 PPRC1Q5VV67 1664 aaKnown RBP13.44□□□□□ -0.26
TRIM39-202ENST00000376659 RSPH4AQ5TD94 716 aa13.44□□□□□ -0.26
TRIM39-202ENST00000376659 FRMPD1Q5SYB0 1578 aa13.43□□□□□ -0.26
TRIM39-202ENST00000376659 ZNF777Q9ULD5 760 aaPredicted RBP13.43□□□□□ -0.26
TRIM39-202ENST00000376659 TSHZ2Q9NRE2 1034 aa13.41□□□□□ -0.26
TRIM39-202ENST00000376659 LMTK2Q8IWU2 1503 aa13.41□□□□□ -0.26
TRIM39-202ENST00000376659 ABCA6Q8N139 1617 aa13.4□□□□□ -0.26
TRIM39-202ENST00000376659 EFCAB6Q5THR3 1501 aa13.4□□□□□ -0.26
TRIM39-202ENST00000376659 LRPPRCP42704 1394 aaKnown RBP13.4□□□□□ -0.26
TRIM39-202ENST00000376659 ZMYM4Q5VZL5 1548 aa13.39□□□□□ -0.27
TRIM39-202ENST00000376659 CFAP74Q9C0B2 1584 aa13.39□□□□□ -0.27
TRIM39-202ENST00000376659 SIGLEC1Q9BZZ2 1709 aa13.38□□□□□ -0.27
TRIM39-202ENST00000376659 PPLO60437 1756 aa13.38□□□□□ -0.27
TRIM39-202ENST00000376659 MAP3K4Q9Y6R4 1608 aa13.38□□□□□ -0.27
TRIM39-202ENST00000376659 NRXN1Q9ULB1 1477 aa13.38□□□□□ -0.27
TRIM39-202ENST00000376659 KIF1BO60333 1816 aa13.38□□□□□ -0.27
TRIM39-202ENST00000376659 SYNMO15061 1565 aa13.37□□□□□ -0.27
TRIM39-202ENST00000376659 CCDC144AA2RUR9 1427 aa13.37□□□□□ -0.27
TRIM39-202ENST00000376659 ROCK2O75116 1388 aaKnown RBP13.37□□□□□ -0.27
TRIM39-202ENST00000376659 ZBED9Q6R2W3 1325 aa13.36□□□□□ -0.27
TRIM39-202ENST00000376659 PIK3C2BO00750 1634 aa13.36□□□□□ -0.27
TRIM39-202ENST00000376659 HECW2Q9P2P5 1572 aa13.35□□□□□ -0.27
TRIM39-202ENST00000376659 PARD3Q8TEW0 1356 aa13.34□□□□□ -0.27
TRIM39-202ENST00000376659 SCAPERQ9BY12 1400 aa13.34□□□□□ -0.27
TRIM39-202ENST00000376659 RICTORQ6R327 1708 aa13.34□□□□□ -0.27
TRIM39-202ENST00000376659 ADGRB3O60242 1522 aa13.34□□□□□ -0.27
TRIM39-202ENST00000376659 TSPY4P0CV99 314 aa13.34□□□□□ -0.27
TRIM39-202ENST00000376659 TSPY10P0CW01 314 aa13.34□□□□□ -0.27
TRIM39-202ENST00000376659 FANCAO15360 1455 aa13.33□□□□□ -0.27
TRIM39-202ENST00000376659 SMG6Q86US8 1419 aaKnown RBP13.33□□□□□ -0.27
TRIM39-202ENST00000376659 MYOM2P54296 1465 aa13.33□□□□□ -0.28
TRIM39-202ENST00000376659 RNF123Q5XPI4 1314 aa13.33□□□□□ -0.28
TRIM39-202ENST00000376659 KTN1Q86UP2 1357 aaKnown RBP13.32□□□□□ -0.28
TRIM39-202ENST00000376659 FKBP8Q14318 412 aa13.32□□□□□ -0.28
TRIM39-202ENST00000376659 TESK2Q96S53 571 aa13.31□□□□□ -0.28
TRIM39-202ENST00000376659 DISP3Q9P2K9 1392 aa13.31□□□□□ -0.28
TRIM39-202ENST00000376659 UGGT1Q9NYU2 1555 aa13.31□□□□□ -0.28
TRIM39-202ENST00000376659 ZNF518AQ6AHZ1 1483 aa13.3□□□□□ -0.28
TRIM39-202ENST00000376659 KDM5AP29375 1690 aaKnown RBP13.3□□□□□ -0.28
TRIM39-202ENST00000376659 CAMSAP1Q5T5Y3 1602 aa13.3□□□□□ -0.28
TRIM39-202ENST00000376659 SETBP1Q9Y6X0 1596 aa13.29□□□□□ -0.28
TRIM39-202ENST00000376659 ERICH6Q7L0X2 663 aa13.29□□□□□ -0.28
TRIM39-202ENST00000376659 INSRP06213 1382 aa13.29□□□□□ -0.28
TRIM39-202ENST00000376659 ASXL2Q76L83 1435 aa13.29□□□□□ -0.28
TRIM39-202ENST00000376659 BLMP54132 1417 aaPredicted RBP13.28□□□□□ -0.28
TRIM39-202ENST00000376659 PER1O15534 1290 aaPredicted RBP13.28□□□□□ -0.28
TRIM39-202ENST00000376659 HNRNPUQ00839 825 aaKnown RBP eCLIP13.27□□□□□ -0.28
TRIM39-202ENST00000376659 ADGRL1O94910 1474 aa13.27□□□□□ -0.29
TRIM39-202ENST00000376659 ST20-MTHFSA0A0A6YYL1 179 aa13.26□□□□□ -0.29
TRIM39-202ENST00000376659 BRD4O60885 1362 aaPredicted RBP13.26□□□□□ -0.29
TRIM39-202ENST00000376659 PNISRQ8TF01 805 aaKnown RBP13.25□□□□□ -0.29
TRIM39-202ENST00000376659 USP32Q8NFA0 1604 aa13.25□□□□□ -0.29
TRIM39-202ENST00000376659 SHPRHQ149N8 1683 aa13.25□□□□□ -0.29
TRIM39-202ENST00000376659 NBPF1Q3BBV0 1214 aa13.25□□□□□ -0.29
TRIM39-202ENST00000376659 DCAF11Q8TEB1 546 aa13.25□□□□□ -0.29
TRIM39-202ENST00000376659 ADGRB1O14514 1584 aa13.24□□□□□ -0.29
TRIM39-202ENST00000376659 DIP2CQ9Y2E4 1556 aa13.24□□□□□ -0.29
TRIM39-202ENST00000376659 CARD11Q9BXL7 1154 aa13.24□□□□□ -0.29
TRIM39-202ENST00000376659 QRICH2Q9H0J4 1663 aa13.24□□□□□ -0.29
TRIM39-202ENST00000376659 POGZQ7Z3K3 1410 aa13.24□□□□□ -0.29
TRIM39-202ENST00000376659 ARHGEF28Q8N1W1 1705 aaKnown RBP13.23□□□□□ -0.29
TRIM39-202ENST00000376659 MLH3Q9UHC1 1453 aa13.23□□□□□ -0.29
TRIM39-202ENST00000376659 EFCAB2Q5VUJ9 269 aa13.22□□□□□ -0.29
TRIM39-202ENST00000376659 MYO5BQ9ULV0 1848 aa13.22□□□□□ -0.29
TRIM39-202ENST00000376659 ERICH6BQ5W0A0 696 aa13.22□□□□□ -0.29
TRIM39-202ENST00000376659 MRS2Q9HD23 443 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms