RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TCERG1O14776 1098 aaKnown RBP17.06■□□□□ 0.32
COL4A1-201ENST00000375820 PTMSP20962 102 aa17.05■□□□□ 0.32
COL4A1-201ENST00000375820 MPHOSPH9Q99550 1183 aa17.04■□□□□ 0.32
COL4A1-201ENST00000375820 KIF16BQ96L93 1317 aa17.04■□□□□ 0.32
COL4A1-201ENST00000375820 NUP155O75694 1391 aa17.04■□□□□ 0.32
COL4A1-201ENST00000375820 CENPJQ9HC77 1338 aaPredicted RBP17.03■□□□□ 0.32
COL4A1-201ENST00000375820 NECTIN2Q92692 538 aa17.03■□□□□ 0.32
COL4A1-201ENST00000375820 CEP89Q96ST8 783 aa17.03■□□□□ 0.32
COL4A1-201ENST00000375820 HMMRO75330 724 aa17.03■□□□□ 0.32
COL4A1-201ENST00000375820 TPD52L1Q16890 204 aaPredicted RBP17.03■□□□□ 0.32
COL4A1-201ENST00000375820 BCL11BQ9C0K0 894 aaPredicted RBP17.03■□□□□ 0.32
COL4A1-201ENST00000375820 H3BQV1 296 aa17.03■□□□□ 0.32
COL4A1-201ENST00000375820 IFFO2Q5TF58 517 aa17.03■□□□□ 0.32
COL4A1-201ENST00000375820 IPO9Q96P70 1041 aaKnown RBP17.03■□□□□ 0.32
COL4A1-201ENST00000375820 MSH5O43196 834 aa17.02■□□□□ 0.32
COL4A1-201ENST00000375820 TSHZ2Q9NRE2 1034 aa17.02■□□□□ 0.32
COL4A1-201ENST00000375820 ARHGAP35Q9NRY4 1499 aa17.02■□□□□ 0.32
COL4A1-201ENST00000375820 TPM3P06753 285 aa17.02■□□□□ 0.32
COL4A1-201ENST00000375820 HNRNPMP52272 730 aaKnown RBP eCLIP17.01■□□□□ 0.31
COL4A1-201ENST00000375820 TRAK1Q9UPV9 953 aa17.01■□□□□ 0.31
COL4A1-201ENST00000375820 KIF3BO15066 747 aa17.01■□□□□ 0.31
COL4A1-201ENST00000375820 RALBP1Q15311 655 aa17.01■□□□□ 0.31
COL4A1-201ENST00000375820 CUX2O14529 1486 aa17.01■□□□□ 0.31
COL4A1-201ENST00000375820 SOGA1O94964 1423 aa17.01■□□□□ 0.31
COL4A1-201ENST00000375820 CARMIL1Q5VZK9 1371 aa17■□□□□ 0.31
COL4A1-201ENST00000375820 MCTP1Q6DN14 999 aa17■□□□□ 0.31
COL4A1-201ENST00000375820 FBXW7Q969H0 707 aa17■□□□□ 0.31
COL4A1-201ENST00000375820 ANKRD45Q5TZF3 282 aa17■□□□□ 0.31
COL4A1-201ENST00000375820 ZNF592Q92610 1267 aa16.99■□□□□ 0.31
COL4A1-201ENST00000375820 FHAD1B1AJZ9 1412 aa16.98■□□□□ 0.31
COL4A1-201ENST00000375820 CSPP1Q1MSJ5 1256 aa16.98■□□□□ 0.31
COL4A1-201ENST00000375820 CCDC34Q96HJ3 373 aa16.98■□□□□ 0.31
COL4A1-201ENST00000375820 ST18O60284 1047 aa16.98■□□□□ 0.31
COL4A1-201ENST00000375820 FOSBP53539 338 aa16.98■□□□□ 0.31
COL4A1-201ENST00000375820 FAM184AQ8NB25 1140 aa16.97■□□□□ 0.31
COL4A1-201ENST00000375820 TERF2IPQ9NYB0 399 aa16.96■□□□□ 0.31
COL4A1-201ENST00000375820 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
COL4A1-201ENST00000375820 EIF2S2P20042 333 aaKnown RBP16.96■□□□□ 0.31
COL4A1-201ENST00000375820 SAMD1Q6SPF0 538 aaPredicted RBP16.95■□□□□ 0.3
COL4A1-201ENST00000375820 DDX49Q9Y6V7 483 aaKnown RBP16.93■□□□□ 0.3
COL4A1-201ENST00000375820 PCMTD1Q96MG8 357 aaPredicted RBP16.93■□□□□ 0.3
COL4A1-201ENST00000375820 RB1CC1Q8TDY2 1594 aa16.93■□□□□ 0.3
COL4A1-201ENST00000375820 L3MBTL2Q969R5 705 aa16.92■□□□□ 0.3
COL4A1-201ENST00000375820 EIF3AQ14152 1382 aaKnown RBP16.92■□□□□ 0.3
COL4A1-201ENST00000375820 PHF14O94880 888 aa16.92■□□□□ 0.3
COL4A1-201ENST00000375820 GOLGA6L19H0YKK7 550 aa16.91■□□□□ 0.3
COL4A1-201ENST00000375820 AKAP17AQ02040 695 aaKnown RBP16.91■□□□□ 0.3
COL4A1-201ENST00000375820 EID1Q9Y6B2 187 aa16.91■□□□□ 0.3
COL4A1-201ENST00000375820 KDM4AO75164 1064 aa16.91■□□□□ 0.3
COL4A1-201ENST00000375820 SYTL4Q96C24 671 aaPredicted RBP16.91■□□□□ 0.3
COL4A1-201ENST00000375820 WASHC2CQ9Y4E1 1318 aa16.9■□□□□ 0.3
COL4A1-201ENST00000375820 BECN2A8MW95 431 aa16.9■□□□□ 0.3
COL4A1-201ENST00000375820 EVA1CP58658 441 aa16.9■□□□□ 0.3
COL4A1-201ENST00000375820 APPP05067 770 aa16.89■□□□□ 0.29
COL4A1-201ENST00000375820 EXOC6Q8TAG9 804 aa16.89■□□□□ 0.29
COL4A1-201ENST00000375820 TSR1Q2NL82 804 aaKnown RBP16.89■□□□□ 0.29
COL4A1-201ENST00000375820 CRBNQ96SW2 442 aa16.89■□□□□ 0.29
COL4A1-201ENST00000375820 PANK3Q9H999 370 aa16.89■□□□□ 0.29
COL4A1-201ENST00000375820 COG6Q9Y2V7 657 aa16.89■□□□□ 0.29
COL4A1-201ENST00000375820 DHX16O60231 1041 aaKnown RBP16.88■□□□□ 0.29
COL4A1-201ENST00000375820 TCEAL9Q9UHQ7 104 aa16.88■□□□□ 0.29
COL4A1-201ENST00000375820 HSP90AA2PQ14568 343 aaPredicted RBP16.88■□□□□ 0.29
COL4A1-201ENST00000375820 C1orf141Q5JVX7 400 aa16.87■□□□□ 0.29
COL4A1-201ENST00000375820 ANO2Q9NQ90 1003 aa16.87■□□□□ 0.29
COL4A1-201ENST00000375820 KLHL34Q8N239 644 aa16.87■□□□□ 0.29
COL4A1-201ENST00000375820 LMOD3Q0VAK6 560 aa16.86■□□□□ 0.29
COL4A1-201ENST00000375820 DIAPH3Q9NSV4 1193 aa16.85■□□□□ 0.29
COL4A1-201ENST00000375820 TRIM34Q9BYJ4 488 aa16.85■□□□□ 0.29
COL4A1-201ENST00000375820 DDX11L8A8MPP1 907 aa16.85■□□□□ 0.29
COL4A1-201ENST00000375820 HDAC5Q9UQL6 1122 aa16.84■□□□□ 0.29
COL4A1-201ENST00000375820 EFCAB2Q5VUJ9 269 aa16.84■□□□□ 0.29
COL4A1-201ENST00000375820 NLRP13Q86W25 1043 aa16.84■□□□□ 0.29
COL4A1-201ENST00000375820 ANKRD30AQ9BXX3 1397 aa16.84■□□□□ 0.29
COL4A1-201ENST00000375820 KIF3AQ9Y496 699 aa16.84■□□□□ 0.29
COL4A1-201ENST00000375820 ABCC8Q09428 1581 aa16.84■□□□□ 0.29
COL4A1-201ENST00000375820 PDE4AP27815 886 aa16.84■□□□□ 0.29
COL4A1-201ENST00000375820 SYNE3Q6ZMZ3 975 aa16.83■□□□□ 0.29
COL4A1-201ENST00000375820 CTDP1Q9Y5B0 961 aaPredicted RBP16.83■□□□□ 0.29
COL4A1-201ENST00000375820 TIMELESSQ9UNS1 1208 aa16.83■□□□□ 0.29
COL4A1-201ENST00000375820 ST20-MTHFSA0A0A6YYL1 179 aa16.83■□□□□ 0.28
COL4A1-201ENST00000375820 TPM2P07951 284 aa16.83■□□□□ 0.28
COL4A1-201ENST00000375820 C9orf78Q9NZ63 289 aaPredicted RBP16.83■□□□□ 0.28
COL4A1-201ENST00000375820 MTMR7Q9Y216 660 aa16.83■□□□□ 0.28
COL4A1-201ENST00000375820 ZNF771Q7L3S4 317 aaPredicted RBP16.83■□□□□ 0.28
COL4A1-201ENST00000375820 MINK1Q8N4C8 1332 aaPredicted RBP16.82■□□□□ 0.28
COL4A1-201ENST00000375820 FYB1O15117 783 aa16.82■□□□□ 0.28
COL4A1-201ENST00000375820 CNKSR2Q8WXI2 1034 aa16.81■□□□□ 0.28
COL4A1-201ENST00000375820 SETQ01105 290 aaPredicted RBP16.81■□□□□ 0.28
COL4A1-201ENST00000375820 VSIG10Q8N0Z9 540 aa16.81■□□□□ 0.28
COL4A1-201ENST00000375820 COG3Q96JB2 828 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 CHMP4AQ9BY43 222 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 TEFQ10587 303 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 FAM161AQ3B820 660 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 VPS37DQ86XT2 251 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 TPM1P09493 284 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 TRIM29Q14134 588 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 TTC5Q8N0Z6 440 aa16.8■□□□□ 0.28
COL4A1-201ENST00000375820 NFXL1Q6ZNB6 911 aa16.79■□□□□ 0.28
COL4A1-201ENST00000375820 BICD2Q8TD16 824 aa16.79■□□□□ 0.28
COL4A1-201ENST00000375820 TDRD9Q8NDG6 1382 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms