RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 PAK3O75914 559 aaPredicted RBP8.34□□□□□ -1.07
SMC1A-202ENST00000375340 ARID3AQ99856 593 aa8.34□□□□□ -1.07
SMC1A-202ENST00000375340 BCL2L13Q9BXK5 485 aa8.34□□□□□ -1.07
SMC1A-202ENST00000375340 U2AF1L5P0DN76 240 aaPredicted RBP8.34□□□□□ -1.07
SMC1A-202ENST00000375340 U2AF1Q01081 240 aaKnown RBP eCLIP8.34□□□□□ -1.07
SMC1A-202ENST00000375340 CENPJQ9HC77 1338 aaPredicted RBP8.34□□□□□ -1.07
SMC1A-202ENST00000375340 CTTNBP2Q8WZ74 1663 aa8.34□□□□□ -1.07
SMC1A-202ENST00000375340 CFAP43Q8NDM7 1665 aa8.33□□□□□ -1.08
SMC1A-202ENST00000375340 NBPF8Q3BBV2 869 aa8.33□□□□□ -1.08
SMC1A-202ENST00000375340 HFM1A2PYH4 1435 aa8.33□□□□□ -1.08
SMC1A-202ENST00000375340 DNTTIP2Q5QJE6 756 aaKnown RBP8.33□□□□□ -1.08
SMC1A-202ENST00000375340 CUL7Q14999 1698 aa8.33□□□□□ -1.08
SMC1A-202ENST00000375340 TOPBP1Q92547 1522 aa8.32□□□□□ -1.08
SMC1A-202ENST00000375340 DNMBPQ6XZF7 1577 aa8.32□□□□□ -1.08
SMC1A-202ENST00000375340 TAOK2Q9UL54 1235 aa8.32□□□□□ -1.08
SMC1A-202ENST00000375340 PDE3BQ13370 1112 aa8.32□□□□□ -1.08
SMC1A-202ENST00000375340 GGT6Q6P531 493 aa8.32□□□□□ -1.08
SMC1A-202ENST00000375340 CDCA7LQ96GN5 454 aa8.32□□□□□ -1.08
SMC1A-202ENST00000375340 CENPQQ7L2Z9 268 aaPredicted RBP8.32□□□□□ -1.08
SMC1A-202ENST00000375340 FAM161AQ3B820 660 aa8.32□□□□□ -1.08
SMC1A-202ENST00000375340 RWDD1Q9H446 243 aaPredicted RBP8.31□□□□□ -1.08
SMC1A-202ENST00000375340 SMC4Q9NTJ3 1288 aa8.31□□□□□ -1.08
SMC1A-202ENST00000375340 PLCB2Q00722 1185 aa8.31□□□□□ -1.08
SMC1A-202ENST00000375340 POLA1P09884 1462 aaPredicted RBP8.31□□□□□ -1.08
SMC1A-202ENST00000375340 DAPK1P53355 1430 aa8.3□□□□□ -1.08
SMC1A-202ENST00000375340 PMFBP1Q8TBY8 1022 aa8.3□□□□□ -1.08
SMC1A-202ENST00000375340 MS4A1P11836 297 aa8.3□□□□□ -1.08
SMC1A-202ENST00000375340 COG6Q9Y2V7 657 aa8.3□□□□□ -1.08
SMC1A-202ENST00000375340 GOLGA6L3A6NEY3 463 aa8.3□□□□□ -1.08
SMC1A-202ENST00000375340 GSE1Q14687 1217 aa8.3□□□□□ -1.08
SMC1A-202ENST00000375340 MLECQ14165 292 aa8.29□□□□□ -1.08
SMC1A-202ENST00000375340 TRAK1Q9UPV9 953 aa8.29□□□□□ -1.08
SMC1A-202ENST00000375340 ARHGAP5Q13017 1502 aa8.29□□□□□ -1.08
SMC1A-202ENST00000375340 KIF3BO15066 747 aa8.29□□□□□ -1.08
SMC1A-202ENST00000375340 NAIPQ13075 1403 aa8.28□□□□□ -1.08
SMC1A-202ENST00000375340 C11orf95C9JLR9 678 aaPredicted RBP8.28□□□□□ -1.08
SMC1A-202ENST00000375340 FOXD4L5Q5VV16 416 aaPredicted RBP8.28□□□□□ -1.08
SMC1A-202ENST00000375340 FOXD4L4Q8WXT5 416 aaPredicted RBP8.28□□□□□ -1.08
SMC1A-202ENST00000375340 SMG6Q86US8 1419 aaKnown RBP8.28□□□□□ -1.08
SMC1A-202ENST00000375340 NOL8Q76FK4 1167 aaKnown RBP8.28□□□□□ -1.08
SMC1A-202ENST00000375340 SKAP1Q86WV1 359 aa8.28□□□□□ -1.08
SMC1A-202ENST00000375340 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.28□□□□□ -1.08
SMC1A-202ENST00000375340 APAF1O14727 1248 aa8.28□□□□□ -1.08
SMC1A-202ENST00000375340 PEG3Q9GZU2 1588 aa8.27□□□□□ -1.08
SMC1A-202ENST00000375340 MSNP26038 577 aaKnown RBP8.27□□□□□ -1.09
SMC1A-202ENST00000375340 OS9Q13438 667 aaPredicted RBP8.27□□□□□ -1.09
SMC1A-202ENST00000375340 ANKRD50Q9ULJ7 1429 aa8.27□□□□□ -1.09
SMC1A-202ENST00000375340 JPH4Q96JJ6 628 aa8.27□□□□□ -1.09
SMC1A-202ENST00000375340 PANK1Q8TE04 598 aa8.27□□□□□ -1.09
SMC1A-202ENST00000375340 PNNQ9H307 717 aaKnown RBP8.27□□□□□ -1.09
SMC1A-202ENST00000375340 BRD4O60885 1362 aaPredicted RBP8.26□□□□□ -1.09
SMC1A-202ENST00000375340 IL27Q8NEV9 243 aa8.26□□□□□ -1.09
SMC1A-202ENST00000375340 SPAG9O60271 1321 aaKnown RBP8.26□□□□□ -1.09
SMC1A-202ENST00000375340 PRG4Q92954 1404 aaPredicted RBP8.26□□□□□ -1.09
SMC1A-202ENST00000375340 EPRSP07814 1512 aaKnown RBP8.26□□□□□ -1.09
SMC1A-202ENST00000375340 ADAMTS8Q9UP79 889 aa8.26□□□□□ -1.09
SMC1A-202ENST00000375340 IQGAP2Q13576 1575 aa8.26□□□□□ -1.09
SMC1A-202ENST00000375340 GBP4Q96PP9 640 aa8.25□□□□□ -1.09
SMC1A-202ENST00000375340 BRPF3Q9ULD4 1205 aa8.25□□□□□ -1.09
SMC1A-202ENST00000375340 HDGFL2Q7Z4V5 671 aaPredicted RBP8.25□□□□□ -1.09
SMC1A-202ENST00000375340 CAMSAP2Q08AD1 1489 aa8.25□□□□□ -1.09
SMC1A-202ENST00000375340 A0A0G2JS52 829 aa8.25□□□□□ -1.09
SMC1A-202ENST00000375340 E9PSI1 815 aa8.25□□□□□ -1.09
SMC1A-202ENST00000375340 KIAA1107Q9UPP5 1409 aa8.25□□□□□ -1.09
SMC1A-202ENST00000375340 NBPF1Q3BBV0 1214 aa8.24□□□□□ -1.09
SMC1A-202ENST00000375340 C9orf84Q5VXU9 1444 aa8.24□□□□□ -1.09
SMC1A-202ENST00000375340 IPO8O15397 1037 aaKnown RBP8.24□□□□□ -1.09
SMC1A-202ENST00000375340 EFCAB2Q5VUJ9 269 aa8.24□□□□□ -1.09
SMC1A-202ENST00000375340 NFKBIBQ15653 356 aa8.24□□□□□ -1.09
SMC1A-202ENST00000375340 USP35Q9P2H5 1018 aa8.24□□□□□ -1.09
SMC1A-202ENST00000375340 MIA2Q96PC5 1412 aa8.24□□□□□ -1.09
SMC1A-202ENST00000375340 CHMP4BQ9H444 224 aaKnown RBP8.23□□□□□ -1.09
SMC1A-202ENST00000375340 NAP1L2Q9ULW6 460 aaPredicted RBP8.23□□□□□ -1.09
SMC1A-202ENST00000375340 THOC2Q8NI27 1593 aaKnown RBP8.23□□□□□ -1.09
SMC1A-202ENST00000375340 SNAPC4Q5SXM2 1469 aa8.23□□□□□ -1.09
SMC1A-202ENST00000375340 MAP3K1Q13233 1512 aa8.23□□□□□ -1.09
SMC1A-202ENST00000375340 PTPRGP23470 1445 aa8.22□□□□□ -1.09
SMC1A-202ENST00000375340 GRIN2BQ13224 1484 aa8.22□□□□□ -1.09
SMC1A-202ENST00000375340 ABCA10Q8WWZ4 1543 aa8.22□□□□□ -1.09
SMC1A-202ENST00000375340 KCNJ4P48050 445 aa8.21□□□□□ -1.09
SMC1A-202ENST00000375340 LMOD2Q6P5Q4 547 aa8.21□□□□□ -1.09
SMC1A-202ENST00000375340 ELL2O00472 640 aaPredicted RBP8.21□□□□□ -1.09
SMC1A-202ENST00000375340 PTPRKQ15262 1439 aa8.21□□□□□ -1.09
SMC1A-202ENST00000375340 ERBINQ96RT1 1412 aa8.21□□□□□ -1.1
SMC1A-202ENST00000375340 MCCP23508 829 aa8.21□□□□□ -1.1
SMC1A-202ENST00000375340 ANKRD45Q5TZF3 282 aa8.21□□□□□ -1.1
SMC1A-202ENST00000375340 PPP2R1AP30153 589 aa8.21□□□□□ -1.1
SMC1A-202ENST00000375340 PNISRQ8TF01 805 aaKnown RBP8.2□□□□□ -1.1
SMC1A-202ENST00000375340 SLC4A10Q6U841 1118 aa8.2□□□□□ -1.1
SMC1A-202ENST00000375340 ANO8Q9HCE9 1232 aaPredicted RBP8.2□□□□□ -1.1
SMC1A-202ENST00000375340 BCAR3O75815 825 aa8.2□□□□□ -1.1
SMC1A-202ENST00000375340 CGNL1Q0VF96 1302 aa8.2□□□□□ -1.1
SMC1A-202ENST00000375340 KIF14Q15058 1648 aa8.2□□□□□ -1.1
SMC1A-202ENST00000375340 DRC7Q8IY82 874 aa8.2□□□□□ -1.1
SMC1A-202ENST00000375340 NCOA1Q15788 1441 aa8.2□□□□□ -1.1
SMC1A-202ENST00000375340 TRIM6-TRIM34B2RNG4 842 aa8.2□□□□□ -1.1
SMC1A-202ENST00000375340 FOXD4L6Q3SYB3 417 aaPredicted RBP8.2□□□□□ -1.1
SMC1A-202ENST00000375340 FOXD4L3Q6VB84 417 aaPredicted RBP8.2□□□□□ -1.1
SMC1A-202ENST00000375340 ZKSCAN2Q63HK3 967 aa8.19□□□□□ -1.1
SMC1A-202ENST00000375340 RTF1Q92541 710 aaKnown RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms