RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 KIF3BO15066 747 aa16.41■□□□□ 0.22
C9orf3-203ENST00000375315 FANCAO15360 1455 aa16.4■□□□□ 0.22
C9orf3-203ENST00000375315 WASHC2AQ641Q2 1341 aa16.4■□□□□ 0.22
C9orf3-203ENST00000375315 RSPH4AQ5TD94 716 aa16.4■□□□□ 0.22
C9orf3-203ENST00000375315 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-203ENST00000375315 CNGB1Q14028 1251 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-203ENST00000375315 CD109Q6YHK3 1445 aa16.39■□□□□ 0.21
C9orf3-203ENST00000375315 C11orf95C9JLR9 678 aaPredicted RBP16.39■□□□□ 0.21
C9orf3-203ENST00000375315 GGT6Q6P531 493 aa16.38■□□□□ 0.21
C9orf3-203ENST00000375315 DENND4BO75064 1496 aaPredicted RBP16.38■□□□□ 0.21
C9orf3-203ENST00000375315 PREX2Q70Z35 1606 aa16.38■□□□□ 0.21
C9orf3-203ENST00000375315 POLR3GLQ9BT43 218 aa16.38■□□□□ 0.21
C9orf3-203ENST00000375315 PLEKHH2Q8IVE3 1493 aa16.37■□□□□ 0.21
C9orf3-203ENST00000375315 EIF5BO60841 1220 aaKnown RBP16.37■□□□□ 0.21
C9orf3-203ENST00000375315 USP35Q9P2H5 1018 aa16.37■□□□□ 0.21
C9orf3-203ENST00000375315 MYO5CQ9NQX4 1742 aa16.36■□□□□ 0.21
C9orf3-203ENST00000375315 ADGRL1O94910 1474 aa16.35■□□□□ 0.21
C9orf3-203ENST00000375315 GCC2Q8IWJ2 1684 aa16.34■□□□□ 0.21
C9orf3-203ENST00000375315 RIMBP3CA6NJZ7 1639 aa16.32■□□□□ 0.2
C9orf3-203ENST00000375315 RIMBP3BA6NNM3 1639 aa16.32■□□□□ 0.2
C9orf3-203ENST00000375315 RIMBP3Q9UFD9 1639 aa16.32■□□□□ 0.2
C9orf3-203ENST00000375315 ANKRD30BQ9BXX2 1392 aa16.32■□□□□ 0.2
C9orf3-203ENST00000375315 WASHC2CQ9Y4E1 1318 aa16.32■□□□□ 0.2
C9orf3-203ENST00000375315 PZPP20742 1482 aa16.31■□□□□ 0.2
C9orf3-203ENST00000375315 DCAF11Q8TEB1 546 aa16.31■□□□□ 0.2
C9orf3-203ENST00000375315 NBPF8Q3BBV2 869 aa16.31■□□□□ 0.2
C9orf3-203ENST00000375315 NEFMP07197 916 aa16.3■□□□□ 0.2
C9orf3-203ENST00000375315 PKNOX2Q96KN3 472 aa16.3■□□□□ 0.2
C9orf3-203ENST00000375315 TRHP20396 242 aaPredicted RBP16.3■□□□□ 0.2
C9orf3-203ENST00000375315 ADGRL2O95490 1459 aa16.29■□□□□ 0.2
C9orf3-203ENST00000375315 MLECQ14165 292 aa16.29■□□□□ 0.2
C9orf3-203ENST00000375315 CHGAP10645 457 aaKnown RBP16.29■□□□□ 0.2
C9orf3-203ENST00000375315 KIAA1107Q9UPP5 1409 aa16.28■□□□□ 0.2
C9orf3-203ENST00000375315 PLPPR3Q6T4P5 718 aa16.27■□□□□ 0.19
C9orf3-203ENST00000375315 ADGBQ8N7X0 1667 aa16.25■□□□□ 0.19
C9orf3-203ENST00000375315 CROCC2H7BZ55 1655 aa16.25■□□□□ 0.19
C9orf3-203ENST00000375315 SHANK2Q9UPX8 1470 aa16.25■□□□□ 0.19
C9orf3-203ENST00000375315 ABCC1P33527 1531 aa16.25■□□□□ 0.19
C9orf3-203ENST00000375315 PPM1GO15355 546 aaPredicted RBP16.25■□□□□ 0.19
C9orf3-203ENST00000375315 ARHGEF5Q12774 1597 aa16.24■□□□□ 0.19
C9orf3-203ENST00000375315 HSPA5P11021 654 aaKnown RBP16.24■□□□□ 0.19
C9orf3-203ENST00000375315 RSPH6AQ9H0K4 717 aa16.23■□□□□ 0.19
C9orf3-203ENST00000375315 ZBED9Q6R2W3 1325 aa16.21■□□□□ 0.19
C9orf3-203ENST00000375315 BRPF3Q9ULD4 1205 aa16.21■□□□□ 0.19
C9orf3-203ENST00000375315 LAS1LQ9Y4W2 734 aaKnown RBP16.21■□□□□ 0.18
C9orf3-203ENST00000375315 TSPOAP1O95153 1857 aa16.21■□□□□ 0.18
C9orf3-203ENST00000375315 ABCA9Q8IUA7 1624 aa16.2■□□□□ 0.18
C9orf3-203ENST00000375315 EIF4G2P78344 907 aaKnown RBP eCLIP16.19■□□□□ 0.18
C9orf3-203ENST00000375315 GLIPR1L2Q4G1C9 344 aa16.18■□□□□ 0.18
C9orf3-203ENST00000375315 NUTM2DQ5VT03 806 aaPredicted RBP16.18■□□□□ 0.18
C9orf3-203ENST00000375315 FAM135AQ9P2D6 1515 aa16.18■□□□□ 0.18
C9orf3-203ENST00000375315 RPRD2Q5VT52 1461 aaKnown RBP16.17■□□□□ 0.18
C9orf3-203ENST00000375315 CCDC144AA2RUR9 1427 aa16.17■□□□□ 0.18
C9orf3-203ENST00000375315 GSE1Q14687 1217 aa16.16■□□□□ 0.18
C9orf3-203ENST00000375315 CARD11Q9BXL7 1154 aa16.15■□□□□ 0.18
C9orf3-203ENST00000375315 NPM2Q86SE8 214 aaKnown RBP16.15■□□□□ 0.18
C9orf3-203ENST00000375315 ATP7AQ04656 1500 aa16.15■□□□□ 0.18
C9orf3-203ENST00000375315 DUOX2Q9NRD8 1548 aa16.15■□□□□ 0.18
C9orf3-203ENST00000375315 KANK1Q14678 1352 aa16.14■□□□□ 0.17
C9orf3-203ENST00000375315 FAM9BQ8IZU0 186 aa16.13■□□□□ 0.17
C9orf3-203ENST00000375315 ARID4BQ4LE39 1312 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-203ENST00000375315 DHX29Q7Z478 1369 aaKnown RBP16.13■□□□□ 0.17
C9orf3-203ENST00000375315 NBPF1Q3BBV0 1214 aa16.13■□□□□ 0.17
C9orf3-203ENST00000375315 ZFYVE16Q7Z3T8 1539 aa16.12■□□□□ 0.17
C9orf3-203ENST00000375315 ZNF518AQ6AHZ1 1483 aa16.12■□□□□ 0.17
C9orf3-203ENST00000375315 CFAP65Q6ZU64 1925 aaKnown RBP16.12■□□□□ 0.17
C9orf3-203ENST00000375315 YEATS2Q9ULM3 1422 aa16.12■□□□□ 0.17
C9orf3-203ENST00000375315 POGZQ7Z3K3 1410 aa16.1■□□□□ 0.17
C9orf3-203ENST00000375315 ERBINQ96RT1 1412 aa16.09■□□□□ 0.17
C9orf3-203ENST00000375315 MRS2Q9HD23 443 aa16.09■□□□□ 0.17
C9orf3-203ENST00000375315 RTEL1-TNFRSF6BF6WH68 1400 aa16.08■□□□□ 0.16
C9orf3-203ENST00000375315 FAM43AQ8N2R8 423 aa16.08■□□□□ 0.16
C9orf3-203ENST00000375315 A2MP01023 1474 aa16.08■□□□□ 0.16
C9orf3-203ENST00000375315 PLA2R1Q13018 1463 aa16.07■□□□□ 0.16
C9orf3-203ENST00000375315 TEX14Q8IWB6 1497 aa16.07■□□□□ 0.16
C9orf3-203ENST00000375315 CCDC184Q52MB2 194 aa16.07■□□□□ 0.16
C9orf3-203ENST00000375315 SMG6Q86US8 1419 aaKnown RBP16.07■□□□□ 0.16
C9orf3-203ENST00000375315 TCERG1O14776 1098 aaKnown RBP16.06■□□□□ 0.16
C9orf3-203ENST00000375315 MAST1Q9Y2H9 1570 aa16.06■□□□□ 0.16
C9orf3-203ENST00000375315 ST20-MTHFSA0A0A6YYL1 179 aa16.05■□□□□ 0.16
C9orf3-203ENST00000375315 ARAP3Q8WWN8 1544 aa16.05■□□□□ 0.16
C9orf3-203ENST00000375315 RNF123Q5XPI4 1314 aa16.05■□□□□ 0.16
C9orf3-203ENST00000375315 FBXO31Q5XUX0 539 aaPredicted RBP16.05■□□□□ 0.16
C9orf3-203ENST00000375315 DDRGK1Q96HY6 314 aa16.04■□□□□ 0.16
C9orf3-203ENST00000375315 PLXNC1O60486 1568 aa16.04■□□□□ 0.16
C9orf3-203ENST00000375315 ROCK2O75116 1388 aaKnown RBP16.04■□□□□ 0.16
C9orf3-203ENST00000375315 CNTLNQ9NXG0 1405 aa16.04■□□□□ 0.16
C9orf3-203ENST00000375315 PRKRIP1Q9H875 184 aaPredicted RBP16.03■□□□□ 0.16
C9orf3-203ENST00000375315 NUDCQ9Y266 331 aa16.03■□□□□ 0.16
C9orf3-203ENST00000375315 KIDINS220Q9ULH0 1771 aa16.02■□□□□ 0.16
C9orf3-203ENST00000375315 PDE4AP27815 886 aa16.02■□□□□ 0.15
C9orf3-203ENST00000375315 FRAT1Q92837 279 aaPredicted RBP16.02■□□□□ 0.15
C9orf3-203ENST00000375315 USP47Q96K76 1375 aa16.01■□□□□ 0.15
C9orf3-203ENST00000375315 ESF1Q9H501 851 aaKnown RBP16.01■□□□□ 0.15
C9orf3-203ENST00000375315 UGGT1Q9NYU2 1555 aa16.01■□□□□ 0.15
C9orf3-203ENST00000375315 SENP3-EIF4A1A0A087X0R7 540 aa16.01■□□□□ 0.15
C9orf3-203ENST00000375315 STAG3Q9UJ98 1225 aa16■□□□□ 0.15
C9orf3-203ENST00000375315 NEO1Q92859 1461 aa16■□□□□ 0.15
C9orf3-203ENST00000375315 NFKBIBQ15653 356 aa15.99■□□□□ 0.15
C9orf3-203ENST00000375315 DIP2BQ9P265 1576 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms