RNA–Protein interactions for RNA: ENST00000361138.6

SMC5-201, Transcript of structural maintenance of chromosomes 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC5, Length 5,980 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-201ENST00000361138 CGNL1Q0VF96 1302 aa17.46■□□□□ 0.39
SMC5-201ENST00000361138 AMER1Q5JTC6 1135 aaPredicted RBP17.46■□□□□ 0.39
SMC5-201ENST00000361138 KCNJ4P48050 445 aa17.46■□□□□ 0.38
SMC5-201ENST00000361138 OS9Q13438 667 aaPredicted RBP17.46■□□□□ 0.38
SMC5-201ENST00000361138 AKNAQ7Z591 1439 aa17.45■□□□□ 0.38
SMC5-201ENST00000361138 ARAP1Q96P48 1450 aa17.45■□□□□ 0.38
SMC5-201ENST00000361138 ERICH3Q5RHP9 1530 aa17.44■□□□□ 0.38
SMC5-201ENST00000361138 APBB1O00213 710 aa17.44■□□□□ 0.38
SMC5-201ENST00000361138 FAM43AQ8N2R8 423 aa17.44■□□□□ 0.38
SMC5-201ENST00000361138 SMG6Q86US8 1419 aaKnown RBP17.44■□□□□ 0.38
SMC5-201ENST00000361138 CHMP5Q9NZZ3 219 aa17.43■□□□□ 0.38
SMC5-201ENST00000361138 DDX49Q9Y6V7 483 aaKnown RBP17.42■□□□□ 0.38
SMC5-201ENST00000361138 SRPK2P78362 688 aaKnown RBP17.41■□□□□ 0.38
SMC5-201ENST00000361138 COG6Q9Y2V7 657 aa17.41■□□□□ 0.38
SMC5-201ENST00000361138 BRD4O60885 1362 aaPredicted RBP17.41■□□□□ 0.38
SMC5-201ENST00000361138 PHF14O94880 888 aa17.41■□□□□ 0.38
SMC5-201ENST00000361138 HAP1P54257 671 aaPredicted RBP17.4■□□□□ 0.38
SMC5-201ENST00000361138 CC2D2AQ9P2K1 1620 aa17.4■□□□□ 0.38
SMC5-201ENST00000361138 FGD1P98174 961 aa17.4■□□□□ 0.38
SMC5-201ENST00000361138 MYOM3Q5VTT5 1437 aa17.4■□□□□ 0.38
SMC5-201ENST00000361138 ST18O60284 1047 aa17.39■□□□□ 0.37
SMC5-201ENST00000361138 BACH2Q9BYV9 841 aa17.39■□□□□ 0.37
SMC5-201ENST00000361138 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.37■□□□□ 0.37
SMC5-201ENST00000361138 CCDC144AA2RUR9 1427 aa17.37■□□□□ 0.37
SMC5-201ENST00000361138 NCAPD3P42695 1498 aa17.37■□□□□ 0.37
SMC5-201ENST00000361138 FRAT2O75474 233 aaPredicted RBP17.36■□□□□ 0.37
SMC5-201ENST00000361138 C14orf37Q86TY3 774 aa17.36■□□□□ 0.37
SMC5-201ENST00000361138 RRP7AQ9Y3A4 280 aaKnown RBP17.36■□□□□ 0.37
SMC5-201ENST00000361138 SYNJ1O43426 1573 aa17.36■□□□□ 0.37
SMC5-201ENST00000361138 MRE11P49959 708 aa17.36■□□□□ 0.37
SMC5-201ENST00000361138 KIAA1211Q6ZU35 1233 aa17.36■□□□□ 0.37
SMC5-201ENST00000361138 ZKSCAN2Q63HK3 967 aa17.35■□□□□ 0.37
SMC5-201ENST00000361138 CSPP1Q1MSJ5 1256 aa17.35■□□□□ 0.37
SMC5-201ENST00000361138 CARMIL2Q6F5E8 1435 aa17.34■□□□□ 0.37
SMC5-201ENST00000361138 BCL2L13Q9BXK5 485 aa17.34■□□□□ 0.37
SMC5-201ENST00000361138 NAP1L2Q9ULW6 460 aaPredicted RBP17.34■□□□□ 0.37
SMC5-201ENST00000361138 SAFB2Q14151 953 aaKnown RBP eCLIP17.33■□□□□ 0.37
SMC5-201ENST00000361138 HNRNPMP52272 730 aaKnown RBP eCLIP17.33■□□□□ 0.36
SMC5-201ENST00000361138 HDGFL2Q7Z4V5 671 aaPredicted RBP17.33■□□□□ 0.36
SMC5-201ENST00000361138 APAF1O14727 1248 aa17.33■□□□□ 0.36
SMC5-201ENST00000361138 FAM13BQ9NYF5 915 aa17.33■□□□□ 0.36
SMC5-201ENST00000361138 IGF1RP08069 1367 aa17.32■□□□□ 0.36
SMC5-201ENST00000361138 FOXD4L5Q5VV16 416 aaPredicted RBP17.32■□□□□ 0.36
SMC5-201ENST00000361138 FOXD4L4Q8WXT5 416 aaPredicted RBP17.32■□□□□ 0.36
SMC5-201ENST00000361138 PKNOX2Q96KN3 472 aa17.31■□□□□ 0.36
SMC5-201ENST00000361138 MIA2Q96PC5 1412 aa17.31■□□□□ 0.36
SMC5-201ENST00000361138 CASKIN1Q8WXD9 1431 aa17.31■□□□□ 0.36
SMC5-201ENST00000361138 ANKRD45Q5TZF3 282 aa17.3■□□□□ 0.36
SMC5-201ENST00000361138 NOL8Q76FK4 1167 aaKnown RBP17.3■□□□□ 0.36
SMC5-201ENST00000361138 CCDC184Q52MB2 194 aa17.3■□□□□ 0.36
SMC5-201ENST00000361138 C22orf23Q9BZE7 217 aa17.3■□□□□ 0.36
SMC5-201ENST00000361138 HTATSF1O43719 755 aaKnown RBP17.29■□□□□ 0.36
SMC5-201ENST00000361138 CDCA7LQ96GN5 454 aa17.29■□□□□ 0.36
SMC5-201ENST00000361138 NCOA2Q15596 1464 aa17.29■□□□□ 0.36
SMC5-201ENST00000361138 TPM2P07951 284 aa17.29■□□□□ 0.36
SMC5-201ENST00000361138 NGEFQ8N5V2 710 aa17.29■□□□□ 0.36
SMC5-201ENST00000361138 FYCO1Q9BQS8 1478 aa17.28■□□□□ 0.36
SMC5-201ENST00000361138 TAOK2Q9UL54 1235 aa17.28■□□□□ 0.36
SMC5-201ENST00000361138 HMMRO75330 724 aa17.28■□□□□ 0.36
SMC5-201ENST00000361138 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
SMC5-201ENST00000361138 TRIM6-TRIM34B2RNG4 842 aa17.28■□□□□ 0.36
SMC5-201ENST00000361138 TRAK2O60296 914 aa17.27■□□□□ 0.36
SMC5-201ENST00000361138 RTF1Q92541 710 aaKnown RBP17.27■□□□□ 0.36
SMC5-201ENST00000361138 AAMPQ13685 434 aa17.27■□□□□ 0.35
SMC5-201ENST00000361138 DDX19BQ9UMR2 479 aa17.27■□□□□ 0.35
SMC5-201ENST00000361138 KIF16BQ96L93 1317 aa17.26■□□□□ 0.35
SMC5-201ENST00000361138 TNNT3P45378 269 aaPredicted RBP17.26■□□□□ 0.35
SMC5-201ENST00000361138 RSPH4AQ5TD94 716 aa17.25■□□□□ 0.35
SMC5-201ENST00000361138 DZIP1LQ8IYY4 767 aaKnown RBP17.24■□□□□ 0.35
SMC5-201ENST00000361138 STK26Q9P289 416 aa17.24■□□□□ 0.35
SMC5-201ENST00000361138 NESP48681 1621 aa17.23■□□□□ 0.35
SMC5-201ENST00000361138 FGD5Q6ZNL6 1462 aa17.23■□□□□ 0.35
SMC5-201ENST00000361138 NASPP49321 788 aaPredicted RBP17.23■□□□□ 0.35
SMC5-201ENST00000361138 PANK1Q8TE04 598 aa17.23■□□□□ 0.35
SMC5-201ENST00000361138 PNISRQ8TF01 805 aaKnown RBP17.23■□□□□ 0.35
SMC5-201ENST00000361138 RAD54L2Q9Y4B4 1467 aa17.23■□□□□ 0.35
SMC5-201ENST00000361138 PLEKHG5O94827 1062 aa17.22■□□□□ 0.35
SMC5-201ENST00000361138 TPM4P67936 248 aa17.22■□□□□ 0.35
SMC5-201ENST00000361138 HFM1A2PYH4 1435 aa17.22■□□□□ 0.35
SMC5-201ENST00000361138 MCTP1Q6DN14 999 aa17.21■□□□□ 0.35
SMC5-201ENST00000361138 MAP7D2Q96T17 732 aa17.21■□□□□ 0.35
SMC5-201ENST00000361138 ADAMTS8Q9UP79 889 aa17.21■□□□□ 0.35
SMC5-201ENST00000361138 R3HCC1Q9Y3T6 440 aaKnown RBP17.21■□□□□ 0.35
SMC5-201ENST00000361138 PRXQ9BXM0 1461 aa17.2■□□□□ 0.34
SMC5-201ENST00000361138 ZNF771Q7L3S4 317 aaPredicted RBP17.2■□□□□ 0.34
SMC5-201ENST00000361138 BICRAQ9NZM4 1560 aa17.2■□□□□ 0.34
SMC5-201ENST00000361138 NUCB2P80303 420 aa17.2■□□□□ 0.34
SMC5-201ENST00000361138 LMOD3Q0VAK6 560 aa17.19■□□□□ 0.34
SMC5-201ENST00000361138 MTERF4Q7Z6M4 381 aaKnown RBP17.19■□□□□ 0.34
SMC5-201ENST00000361138 TERF2IPQ9NYB0 399 aa17.19■□□□□ 0.34
SMC5-201ENST00000361138 JPH4Q96JJ6 628 aa17.18■□□□□ 0.34
SMC5-201ENST00000361138 CCDC39Q9UFE4 941 aa17.18■□□□□ 0.34
SMC5-201ENST00000361138 CCDC173Q0VFZ6 552 aa17.18■□□□□ 0.34
SMC5-201ENST00000361138 RUNDC1Q96C34 613 aa17.18■□□□□ 0.34
SMC5-201ENST00000361138 MLECQ14165 292 aa17.18■□□□□ 0.34
SMC5-201ENST00000361138 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
SMC5-201ENST00000361138 NBPF8Q3BBV2 869 aa17.17■□□□□ 0.34
SMC5-201ENST00000361138 FOXD4L6Q3SYB3 417 aaPredicted RBP17.16■□□□□ 0.34
SMC5-201ENST00000361138 FOXD4L3Q6VB84 417 aaPredicted RBP17.16■□□□□ 0.34
SMC5-201ENST00000361138 STK31Q9BXU1 1019 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms