RNA–Protein interactions for RNA: ENST00000360413.7

SRGAP3-201, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best) BASIC

Gene SRGAP3, Length 8,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-201ENST00000360413 MARCH6O60337 910 aa16.25■□□□□ 0.19
SRGAP3-201ENST00000360413 STK31Q9BXU1 1019 aa16.24■□□□□ 0.19
SRGAP3-201ENST00000360413 AMOTL1Q8IY63 956 aa16.24■□□□□ 0.19
SRGAP3-201ENST00000360413 BECN2A8MW95 431 aa16.24■□□□□ 0.19
SRGAP3-201ENST00000360413 ANKRD20A12PQ8NF67 263 aa16.24■□□□□ 0.19
SRGAP3-201ENST00000360413 HOOK1Q9UJC3 728 aaKnown RBP16.24■□□□□ 0.19
SRGAP3-201ENST00000360413 TPD52L1Q16890 204 aaPredicted RBP16.23■□□□□ 0.19
SRGAP3-201ENST00000360413 CEP162Q5TB80 1403 aa16.23■□□□□ 0.19
SRGAP3-201ENST00000360413 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.23■□□□□ 0.19
SRGAP3-201ENST00000360413 ERCC6Q03468 1493 aa16.23■□□□□ 0.19
SRGAP3-201ENST00000360413 SRPK2P78362 688 aaKnown RBP16.22■□□□□ 0.19
SRGAP3-201ENST00000360413 ARGLU1Q9NWB6 273 aaPredicted RBP16.22■□□□□ 0.19
SRGAP3-201ENST00000360413 LMOD3Q0VAK6 560 aa16.22■□□□□ 0.19
SRGAP3-201ENST00000360413 HOMER1Q86YM7 354 aa16.21■□□□□ 0.19
SRGAP3-201ENST00000360413 KIF27Q86VH2 1401 aa16.21■□□□□ 0.19
SRGAP3-201ENST00000360413 SF3A1Q15459 793 aaKnown RBP16.21■□□□□ 0.19
SRGAP3-201ENST00000360413 AK7Q96M32 723 aa16.21■□□□□ 0.19
SRGAP3-201ENST00000360413 MORC1Q86VD1 984 aa16.21■□□□□ 0.19
SRGAP3-201ENST00000360413 KTN1Q86UP2 1357 aaKnown RBP16.2■□□□□ 0.18
SRGAP3-201ENST00000360413 H0YHG0 523 aa16.2■□□□□ 0.18
SRGAP3-201ENST00000360413 RUFY1Q96T51 708 aa16.2■□□□□ 0.18
SRGAP3-201ENST00000360413 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
SRGAP3-201ENST00000360413 CCDC47Q96A33 483 aaKnown RBP16.19■□□□□ 0.18
SRGAP3-201ENST00000360413 VPS53Q5VIR6 699 aa16.19■□□□□ 0.18
SRGAP3-201ENST00000360413 CCDC191Q8NCU4 936 aa16.19■□□□□ 0.18
SRGAP3-201ENST00000360413 PHLDB1Q86UU1 1377 aa16.19■□□□□ 0.18
SRGAP3-201ENST00000360413 PDE4AP27815 886 aa16.19■□□□□ 0.18
SRGAP3-201ENST00000360413 AKAP17AQ02040 695 aaKnown RBP16.19■□□□□ 0.18
SRGAP3-201ENST00000360413 R3HCC1Q9Y3T6 440 aaKnown RBP16.19■□□□□ 0.18
SRGAP3-201ENST00000360413 ACBD3Q9H3P7 528 aa16.18■□□□□ 0.18
SRGAP3-201ENST00000360413 FOXD4L6Q3SYB3 417 aaPredicted RBP16.18■□□□□ 0.18
SRGAP3-201ENST00000360413 FOXD4L3Q6VB84 417 aaPredicted RBP16.18■□□□□ 0.18
SRGAP3-201ENST00000360413 FAM161AQ3B820 660 aa16.18■□□□□ 0.18
SRGAP3-201ENST00000360413 HSP90B2PQ58FF3 399 aa16.18■□□□□ 0.18
SRGAP3-201ENST00000360413 CEP164Q9UPV0 1460 aa16.17■□□□□ 0.18
SRGAP3-201ENST00000360413 WWC1Q8IX03 1113 aa16.17■□□□□ 0.18
SRGAP3-201ENST00000360413 H3BQV1 296 aa16.16■□□□□ 0.18
SRGAP3-201ENST00000360413 IFFO2Q5TF58 517 aa16.16■□□□□ 0.18
SRGAP3-201ENST00000360413 NOL10Q9BSC4 688 aaKnown RBP16.16■□□□□ 0.18
SRGAP3-201ENST00000360413 CCNB3Q8WWL7 1395 aa16.16■□□□□ 0.18
SRGAP3-201ENST00000360413 CPLX2Q6PUV4 134 aaKnown RBP16.15■□□□□ 0.18
SRGAP3-201ENST00000360413 DIAPH3Q9NSV4 1193 aa16.15■□□□□ 0.18
SRGAP3-201ENST00000360413 TRIM34Q9BYJ4 488 aa16.15■□□□□ 0.18
SRGAP3-201ENST00000360413 MYO6Q9UM54 1294 aa16.15■□□□□ 0.18
SRGAP3-201ENST00000360413 IFT57Q9NWB7 429 aa16.14■□□□□ 0.17
SRGAP3-201ENST00000360413 FRAT2O75474 233 aaPredicted RBP16.14■□□□□ 0.17
SRGAP3-201ENST00000360413 FBXO3Q9UK99 471 aa16.14■□□□□ 0.17
SRGAP3-201ENST00000360413 CTDP1Q9Y5B0 961 aaPredicted RBP16.13■□□□□ 0.17
SRGAP3-201ENST00000360413 CSB-PGBD3P0DP91 1061 aa16.13■□□□□ 0.17
SRGAP3-201ENST00000360413 HSP90AB3PQ58FF7 597 aa16.13■□□□□ 0.17
SRGAP3-201ENST00000360413 MNS1Q8NEH6 495 aa16.13■□□□□ 0.17
SRGAP3-201ENST00000360413 CHMP3Q9Y3E7 222 aa16.12■□□□□ 0.17
SRGAP3-201ENST00000360413 BCL11BQ9C0K0 894 aaPredicted RBP16.12■□□□□ 0.17
SRGAP3-201ENST00000360413 DCTN1Q14203 1278 aa16.12■□□□□ 0.17
SRGAP3-201ENST00000360413 SYNE3Q6ZMZ3 975 aa16.12■□□□□ 0.17
SRGAP3-201ENST00000360413 ZRSR2Q15696 482 aaKnown RBP16.11■□□□□ 0.17
SRGAP3-201ENST00000360413 CENPQQ7L2Z9 268 aaPredicted RBP16.11■□□□□ 0.17
SRGAP3-201ENST00000360413 PLCD4Q9BRC7 762 aa16.11■□□□□ 0.17
SRGAP3-201ENST00000360413 GTF2E1P29083 439 aaPredicted RBP16.11■□□□□ 0.17
SRGAP3-201ENST00000360413 SMC4Q9NTJ3 1288 aa16.11■□□□□ 0.17
SRGAP3-201ENST00000360413 RALBP1Q15311 655 aa16.09■□□□□ 0.17
SRGAP3-201ENST00000360413 WASHC2AQ641Q2 1341 aa16.09■□□□□ 0.17
SRGAP3-201ENST00000360413 ODF2Q5BJF6 829 aa16.09■□□□□ 0.17
SRGAP3-201ENST00000360413 TERF2IPQ9NYB0 399 aa16.09■□□□□ 0.17
SRGAP3-201ENST00000360413 LEKR1Q6ZMV7 388 aa16.09■□□□□ 0.17
SRGAP3-201ENST00000360413 CCDC39Q9UFE4 941 aa16.09■□□□□ 0.17
SRGAP3-201ENST00000360413 HSPA5P11021 654 aaKnown RBP16.08■□□□□ 0.17
SRGAP3-201ENST00000360413 RBM10P98175 930 aaKnown RBP16.08■□□□□ 0.17
SRGAP3-201ENST00000360413 CCDC43Q96MW1 224 aaKnown RBP16.08■□□□□ 0.17
SRGAP3-201ENST00000360413 NASPP49321 788 aaPredicted RBP16.08■□□□□ 0.16
SRGAP3-201ENST00000360413 CCDC173Q0VFZ6 552 aa16.08■□□□□ 0.16
SRGAP3-201ENST00000360413 FAM184AQ8NB25 1140 aa16.07■□□□□ 0.16
SRGAP3-201ENST00000360413 DCAF11Q8TEB1 546 aa16.06■□□□□ 0.16
SRGAP3-201ENST00000360413 BAZ1BQ9UIG0 1483 aaKnown RBP16.06■□□□□ 0.16
SRGAP3-201ENST00000360413 PCMTD1Q96MG8 357 aaPredicted RBP16.06■□□□□ 0.16
SRGAP3-201ENST00000360413 TRIM29Q14134 588 aa16.06■□□□□ 0.16
SRGAP3-201ENST00000360413 PAK3O75914 559 aaPredicted RBP16.05■□□□□ 0.16
SRGAP3-201ENST00000360413 CLUAP1Q96AJ1 413 aa16.05■□□□□ 0.16
SRGAP3-201ENST00000360413 MRE11P49959 708 aa16.05■□□□□ 0.16
SRGAP3-201ENST00000360413 CENPJQ9HC77 1338 aaPredicted RBP16.05■□□□□ 0.16
SRGAP3-201ENST00000360413 IL27Q8NEV9 243 aa16.05■□□□□ 0.16
SRGAP3-201ENST00000360413 ZNF330Q9Y3S2 320 aaPredicted RBP16.04■□□□□ 0.16
SRGAP3-201ENST00000360413 CHMP5Q9NZZ3 219 aa16.04■□□□□ 0.16
SRGAP3-201ENST00000360413 BRPF3Q9ULD4 1205 aa16.04■□□□□ 0.16
SRGAP3-201ENST00000360413 MAPK8IP2Q13387 824 aaPredicted RBP16.04■□□□□ 0.16
SRGAP3-201ENST00000360413 NFKBIBQ15653 356 aa16.04■□□□□ 0.16
SRGAP3-201ENST00000360413 EID1Q9Y6B2 187 aa16.04■□□□□ 0.16
SRGAP3-201ENST00000360413 RRP9O43818 475 aaKnown RBP16.04■□□□□ 0.16
SRGAP3-201ENST00000360413 MCTP1Q6DN14 999 aa16.03■□□□□ 0.16
SRGAP3-201ENST00000360413 CT47A1Q5JQC4 288 aaPredicted RBP16.03■□□□□ 0.16
SRGAP3-201ENST00000360413 AEBP2Q6ZN18 517 aaPredicted RBP16.03■□□□□ 0.16
SRGAP3-201ENST00000360413 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.03■□□□□ 0.16
SRGAP3-201ENST00000360413 TSPYL1Q9H0U9 437 aa16.02■□□□□ 0.16
SRGAP3-201ENST00000360413 ROCK2O75116 1388 aaKnown RBP16.02■□□□□ 0.16
SRGAP3-201ENST00000360413 DCAF8L1A6NGE4 600 aa16.02■□□□□ 0.16
SRGAP3-201ENST00000360413 U2AF1L5P0DN76 240 aaPredicted RBP16.02■□□□□ 0.15
SRGAP3-201ENST00000360413 U2AF1Q01081 240 aaKnown RBP eCLIP16.02■□□□□ 0.15
SRGAP3-201ENST00000360413 ERCC4Q92889 916 aaPredicted RBP16.02■□□□□ 0.15
SRGAP3-201ENST00000360413 TAF3Q5VWG9 929 aa16.02■□□□□ 0.15
SRGAP3-201ENST00000360413 ARHGAP35Q9NRY4 1499 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms