RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 USP35Q9P2H5 1018 aa19.87■□□□□ 0.77
COL18A1-203ENST00000359759 DDX49Q9Y6V7 483 aaKnown RBP19.87■□□□□ 0.77
COL18A1-203ENST00000359759 TMX4Q9H1E5 349 aaPredicted RBP19.87■□□□□ 0.77
COL18A1-203ENST00000359759 GGT6Q6P531 493 aa19.86■□□□□ 0.77
COL18A1-203ENST00000359759 BCL11BQ9C0K0 894 aaPredicted RBP19.86■□□□□ 0.77
COL18A1-203ENST00000359759 G3V3G9 751 aa19.86■□□□□ 0.77
COL18A1-203ENST00000359759 DCAF8Q5TAQ9 597 aa19.86■□□□□ 0.77
COL18A1-203ENST00000359759 GOLGA6L19H0YKK7 550 aa19.86■□□□□ 0.77
COL18A1-203ENST00000359759 RALBP1Q15311 655 aa19.86■□□□□ 0.77
COL18A1-203ENST00000359759 CENPJQ9HC77 1338 aaPredicted RBP19.85■□□□□ 0.77
COL18A1-203ENST00000359759 HDGFP51858 240 aaKnown RBP19.84■□□□□ 0.77
COL18A1-203ENST00000359759 AEBP2Q6ZN18 517 aaPredicted RBP19.84■□□□□ 0.77
COL18A1-203ENST00000359759 KIF27Q86VH2 1401 aa19.84■□□□□ 0.77
COL18A1-203ENST00000359759 WRNQ14191 1432 aaPredicted RBP eCLIP19.84■□□□□ 0.77
COL18A1-203ENST00000359759 SETD5Q9C0A6 1442 aa19.84■□□□□ 0.77
COL18A1-203ENST00000359759 TSR1Q2NL82 804 aaKnown RBP19.83■□□□□ 0.77
COL18A1-203ENST00000359759 RRP7AQ9Y3A4 280 aaKnown RBP19.83■□□□□ 0.76
COL18A1-203ENST00000359759 FRAT2O75474 233 aaPredicted RBP19.82■□□□□ 0.76
COL18A1-203ENST00000359759 GSE1Q14687 1217 aa19.82■□□□□ 0.76
COL18A1-203ENST00000359759 FAM184AQ8NB25 1140 aa19.82■□□□□ 0.76
COL18A1-203ENST00000359759 PLIN1O60240 522 aa19.81■□□□□ 0.76
COL18A1-203ENST00000359759 BECN2A8MW95 431 aa19.81■□□□□ 0.76
COL18A1-203ENST00000359759 NUTM2DQ5VT03 806 aaPredicted RBP19.81■□□□□ 0.76
COL18A1-203ENST00000359759 MCTP1Q6DN14 999 aa19.81■□□□□ 0.76
COL18A1-203ENST00000359759 LTV1Q96GA3 475 aaPredicted RBP19.8■□□□□ 0.76
COL18A1-203ENST00000359759 FAM13BQ9NYF5 915 aa19.8■□□□□ 0.76
COL18A1-203ENST00000359759 ANKRD45Q5TZF3 282 aa19.79■□□□□ 0.76
COL18A1-203ENST00000359759 FBXW7Q969H0 707 aa19.79■□□□□ 0.76
COL18A1-203ENST00000359759 BCL2L13Q9BXK5 485 aa19.79■□□□□ 0.76
COL18A1-203ENST00000359759 PCMTD1Q96MG8 357 aaPredicted RBP19.79■□□□□ 0.76
COL18A1-203ENST00000359759 GPS2Q13227 327 aa19.77■□□□□ 0.76
COL18A1-203ENST00000359759 TPM2P07951 284 aa19.76■□□□□ 0.75
COL18A1-203ENST00000359759 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.76■□□□□ 0.753e-6■■□□□ 13.3
COL18A1-203ENST00000359759 CCDC70Q6NSX1 233 aa19.76■□□□□ 0.75
COL18A1-203ENST00000359759 BAZ1BQ9UIG0 1483 aaKnown RBP19.76■□□□□ 0.75
COL18A1-203ENST00000359759 CALRP27797 417 aaKnown RBP19.75■□□□□ 0.75
COL18A1-203ENST00000359759 PDE4AP27815 886 aa19.75■□□□□ 0.75
COL18A1-203ENST00000359759 ELL2O00472 640 aaPredicted RBP19.74■□□□□ 0.75
COL18A1-203ENST00000359759 TPM1P09493 284 aa19.74■□□□□ 0.75
COL18A1-203ENST00000359759 KIF3AQ9Y496 699 aa19.74■□□□□ 0.75
COL18A1-203ENST00000359759 RAD21O60216 631 aa19.73■□□□□ 0.75
COL18A1-203ENST00000359759 ARHGAP35Q9NRY4 1499 aa19.73■□□□□ 0.75
COL18A1-203ENST00000359759 FAM161AQ3B820 660 aa19.72■□□□□ 0.75
COL18A1-203ENST00000359759 NUTM2FA1L443 756 aa19.71■□□□□ 0.75
COL18A1-203ENST00000359759 AKAP17AQ02040 695 aaKnown RBP19.71■□□□□ 0.75
COL18A1-203ENST00000359759 HOMER1Q86YM7 354 aa19.71■□□□□ 0.75
COL18A1-203ENST00000359759 FOSBP53539 338 aa19.71■□□□□ 0.75
COL18A1-203ENST00000359759 MPHOSPH9Q99550 1183 aa19.7■□□□□ 0.74
COL18A1-203ENST00000359759 SKOR2Q2VWA4 1001 aaPredicted RBP19.7■□□□□ 0.74
COL18A1-203ENST00000359759 CRBNQ96SW2 442 aa19.7■□□□□ 0.74
COL18A1-203ENST00000359759 EXOC6Q8TAG9 804 aa19.7■□□□□ 0.74
COL18A1-203ENST00000359759 AMPHP49418 695 aa19.68■□□□□ 0.74
COL18A1-203ENST00000359759 TEX35Q5T0J7 233 aa19.68■□□□□ 0.74
COL18A1-203ENST00000359759 GTF2E1P29083 439 aaPredicted RBP19.68■□□□□ 0.74
COL18A1-203ENST00000359759 CENPQQ7L2Z9 268 aaPredicted RBP19.68■□□□□ 0.74
COL18A1-203ENST00000359759 FHAD1B1AJZ9 1412 aa19.68■□□□□ 0.74
COL18A1-203ENST00000359759 ANO2Q9NQ90 1003 aa19.67■□□□□ 0.74
COL18A1-203ENST00000359759 HDAC5Q9UQL6 1122 aa19.66■□□□□ 0.74
COL18A1-203ENST00000359759 EIF3AQ14152 1382 aaKnown RBP19.66■□□□□ 0.74
COL18A1-203ENST00000359759 NGEFQ8N5V2 710 aa19.66■□□□□ 0.74
COL18A1-203ENST00000359759 RAB3GAP2Q9H2M9 1393 aa19.66■□□□□ 0.74
COL18A1-203ENST00000359759 ATP6V1DQ9Y5K8 247 aa19.65■□□□□ 0.74
COL18A1-203ENST00000359759 KANK4Q5T7N3 995 aaPredicted RBP19.65■□□□□ 0.74
COL18A1-203ENST00000359759 RRP12Q5JTH9 1297 aaKnown RBP19.64■□□□□ 0.73
COL18A1-203ENST00000359759 NUP155O75694 1391 aa19.64■□□□□ 0.73
COL18A1-203ENST00000359759 NGDNQ8NEJ9 315 aaKnown RBP19.64■□□□□ 0.73
COL18A1-203ENST00000359759 BICD2Q8TD16 824 aa19.64■□□□□ 0.73
COL18A1-203ENST00000359759 SYNE3Q6ZMZ3 975 aa19.63■□□□□ 0.73
COL18A1-203ENST00000359759 TERF2IPQ9NYB0 399 aa19.63■□□□□ 0.73
COL18A1-203ENST00000359759 DIAPH3Q9NSV4 1193 aa19.63■□□□□ 0.73
COL18A1-203ENST00000359759 COG6Q9Y2V7 657 aa19.63■□□□□ 0.73
COL18A1-203ENST00000359759 LMOD3Q0VAK6 560 aa19.62■□□□□ 0.73
COL18A1-203ENST00000359759 TCEAL9Q9UHQ7 104 aa19.62■□□□□ 0.73
COL18A1-203ENST00000359759 TRIM29Q14134 588 aa19.62■□□□□ 0.73
COL18A1-203ENST00000359759 NECTIN2Q92692 538 aa19.62■□□□□ 0.73
COL18A1-203ENST00000359759 NAP1L1P55209 391 aaKnown RBP19.61■□□□□ 0.73
COL18A1-203ENST00000359759 CHMP4AQ9BY43 222 aa19.61■□□□□ 0.73
COL18A1-203ENST00000359759 NLRP13Q86W25 1043 aa19.6■□□□□ 0.73
COL18A1-203ENST00000359759 IPO7O95373 1038 aaKnown RBP19.6■□□□□ 0.73
COL18A1-203ENST00000359759 RRP1P56182 461 aaKnown RBP19.6■□□□□ 0.73
COL18A1-203ENST00000359759 IFT57Q9NWB7 429 aa19.6■□□□□ 0.73
COL18A1-203ENST00000359759 RUFY1Q96T51 708 aa19.59■□□□□ 0.73
COL18A1-203ENST00000359759 PDE3BQ13370 1112 aa19.59■□□□□ 0.73
COL18A1-203ENST00000359759 APPP05067 770 aa19.59■□□□□ 0.73
COL18A1-203ENST00000359759 VPS37CA5D8V6 355 aaPredicted RBP19.57■□□□□ 0.72
COL18A1-203ENST00000359759 EIF2S2P20042 333 aaKnown RBP19.57■□□□□ 0.72
COL18A1-203ENST00000359759 DHX16O60231 1041 aaKnown RBP19.56■□□□□ 0.72
COL18A1-203ENST00000359759 SKIDA1Q1XH10 827 aa19.56■□□□□ 0.72
COL18A1-203ENST00000359759 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.56■□□□□ 0.72
COL18A1-203ENST00000359759 TRAK1Q9UPV9 953 aa19.56■□□□□ 0.72
COL18A1-203ENST00000359759 ZKSCAN2Q63HK3 967 aa19.56■□□□□ 0.72
COL18A1-203ENST00000359759 L3MBTL2Q969R5 705 aa19.56■□□□□ 0.72
COL18A1-203ENST00000359759 R3HCC1Q9Y3T6 440 aaKnown RBP19.56■□□□□ 0.72
COL18A1-203ENST00000359759 FAM43AQ8N2R8 423 aa19.56■□□□□ 0.72
COL18A1-203ENST00000359759 ANKRD20A12PQ8NF67 263 aa19.56■□□□□ 0.72
COL18A1-203ENST00000359759 AK7Q96M32 723 aa19.56■□□□□ 0.72
COL18A1-203ENST00000359759 KDM4AO75164 1064 aa19.55■□□□□ 0.72
COL18A1-203ENST00000359759 SASS6Q6UVJ0 657 aa19.55■□□□□ 0.72
COL18A1-203ENST00000359759 PANK3Q9H999 370 aa19.55■□□□□ 0.72
COL18A1-203ENST00000359759 KIF15Q9NS87 1388 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms