RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 PKNOX2Q96KN3 472 aa13.11□□□□□ -0.31
RNF40-202ENST00000357890 UBE2Q2Q8WVN8 375 aa13.11□□□□□ -0.31
RNF40-202ENST00000357890 ST20-MTHFSA0A0A6YYL1 179 aa13.11□□□□□ -0.31
RNF40-202ENST00000357890 CC2D1BQ5T0F9 858 aaKnown RBP13.1□□□□□ -0.31
RNF40-202ENST00000357890 GPATCH8Q9UKJ3 1502 aaKnown RBP13.1□□□□□ -0.31
RNF40-202ENST00000357890 RSPH4AQ5TD94 716 aa13.1□□□□□ -0.31
RNF40-202ENST00000357890 DNMT1P26358 1616 aaKnown RBP13.1□□□□□ -0.31
RNF40-202ENST00000357890 DENND4BO75064 1496 aaPredicted RBP13.09□□□□□ -0.31
RNF40-202ENST00000357890 KDM5BQ9UGL1 1544 aa13.09□□□□□ -0.31
RNF40-202ENST00000357890 KIF15Q9NS87 1388 aa13.09□□□□□ -0.31
RNF40-202ENST00000357890 CEP170Q5SW79 1584 aa13.09□□□□□ -0.31
RNF40-202ENST00000357890 RGS3P49796 1198 aa13.08□□□□□ -0.31
RNF40-202ENST00000357890 C9orf84Q5VXU9 1444 aa13.08□□□□□ -0.32
RNF40-202ENST00000357890 PDE4AP27815 886 aa13.08□□□□□ -0.32
RNF40-202ENST00000357890 RALBP1Q15311 655 aa13.08□□□□□ -0.32
RNF40-202ENST00000357890 TEX14Q8IWB6 1497 aa13.07□□□□□ -0.32
RNF40-202ENST00000357890 RCAN3Q9UKA8 241 aa13.07□□□□□ -0.32
RNF40-202ENST00000357890 USP35Q9P2H5 1018 aa13.06□□□□□ -0.32
RNF40-202ENST00000357890 FRAT1Q92837 279 aaPredicted RBP13.05□□□□□ -0.32
RNF40-202ENST00000357890 PZPP20742 1482 aa13.05□□□□□ -0.32
RNF40-202ENST00000357890 CCDC144AA2RUR9 1427 aa13.04□□□□□ -0.32
RNF40-202ENST00000357890 MYBBP1AQ9BQG0 1328 aaKnown RBP13.03□□□□□ -0.32
RNF40-202ENST00000357890 TCERG1O14776 1098 aaKnown RBP13.03□□□□□ -0.32
RNF40-202ENST00000357890 EXOC6Q8TAG9 804 aa13.03□□□□□ -0.32
RNF40-202ENST00000357890 RSPH6AQ9H0K4 717 aa13.03□□□□□ -0.32
RNF40-202ENST00000357890 ITSN2Q9NZM3 1697 aa13.03□□□□□ -0.32
RNF40-202ENST00000357890 SPATA31E1Q6ZUB1 1445 aa13.03□□□□□ -0.32
RNF40-202ENST00000357890 KTN1Q86UP2 1357 aaKnown RBP13.02□□□□□ -0.32
RNF40-202ENST00000357890 CHD1O14646 1710 aa13.02□□□□□ -0.32
RNF40-202ENST00000357890 WDR43Q15061 677 aaKnown RBP eCLIP13.02□□□□□ -0.32
RNF40-202ENST00000357890 NFKBIBQ15653 356 aa13.02□□□□□ -0.33
RNF40-202ENST00000357890 NLRP13Q86W25 1043 aa13.01□□□□□ -0.33
RNF40-202ENST00000357890 PNISRQ8TF01 805 aaKnown RBP13.01□□□□□ -0.33
RNF40-202ENST00000357890 ADGRL2O95490 1459 aa13□□□□□ -0.33
RNF40-202ENST00000357890 PLIN1O60240 522 aa13□□□□□ -0.33
RNF40-202ENST00000357890 TMF1P82094 1093 aa13□□□□□ -0.33
RNF40-202ENST00000357890 GZF1Q9H116 711 aaPredicted RBP13□□□□□ -0.33
RNF40-202ENST00000357890 SLKQ9H2G2 1235 aaPredicted RBP13□□□□□ -0.33
RNF40-202ENST00000357890 KIF14Q15058 1648 aa13□□□□□ -0.33
RNF40-202ENST00000357890 SMG6Q86US8 1419 aaKnown RBP12.99□□□□□ -0.33
RNF40-202ENST00000357890 RRP1P56182 461 aaKnown RBP12.99□□□□□ -0.33
RNF40-202ENST00000357890 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
RNF40-202ENST00000357890 PNNQ9H307 717 aaKnown RBP12.98□□□□□ -0.33
RNF40-202ENST00000357890 ATP10BO94823 1461 aa12.98□□□□□ -0.33
RNF40-202ENST00000357890 HSP90AA1P07900 732 aaKnown RBP12.98□□□□□ -0.33
RNF40-202ENST00000357890 SPRYD3Q8NCJ5 442 aa12.98□□□□□ -0.33
RNF40-202ENST00000357890 SKAP1Q86WV1 359 aa12.98□□□□□ -0.33
RNF40-202ENST00000357890 BRD4O60885 1362 aaPredicted RBP12.98□□□□□ -0.33
RNF40-202ENST00000357890 HSP90AA2PQ14568 343 aaPredicted RBP12.97□□□□□ -0.33
RNF40-202ENST00000357890 KNSTRNQ9Y448 316 aa12.97□□□□□ -0.33
RNF40-202ENST00000357890 DHX29Q7Z478 1369 aaKnown RBP12.96□□□□□ -0.33
RNF40-202ENST00000357890 EFCAB2Q5VUJ9 269 aa12.96□□□□□ -0.33
RNF40-202ENST00000357890 ARID3AQ99856 593 aa12.96□□□□□ -0.33
RNF40-202ENST00000357890 RALGAPBQ86X10 1494 aa12.95□□□□□ -0.34
RNF40-202ENST00000357890 CDCA7LQ96GN5 454 aa12.95□□□□□ -0.34
RNF40-202ENST00000357890 CCDC141Q6ZP82 1450 aa12.95□□□□□ -0.34
RNF40-202ENST00000357890 PDE3BQ13370 1112 aa12.94□□□□□ -0.34
RNF40-202ENST00000357890 CDCA8Q53HL2 280 aa12.94□□□□□ -0.34
RNF40-202ENST00000357890 SHANK2Q9UPX8 1470 aa12.94□□□□□ -0.34
RNF40-202ENST00000357890 FRAT2O75474 233 aaPredicted RBP12.94□□□□□ -0.34
RNF40-202ENST00000357890 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.94□□□□□ -0.34
RNF40-202ENST00000357890 NBPF1Q3BBV0 1214 aa12.94□□□□□ -0.34
RNF40-202ENST00000357890 TRIM44Q96DX7 344 aaPredicted RBP12.93□□□□□ -0.34
RNF40-202ENST00000357890 PANK3Q9H999 370 aa12.93□□□□□ -0.34
RNF40-202ENST00000357890 UHRF1BP1Q6BDS2 1440 aa12.93□□□□□ -0.34
RNF40-202ENST00000357890 ADGBQ8N7X0 1667 aa12.92□□□□□ -0.34
RNF40-202ENST00000357890 ARHGAP5Q13017 1502 aa12.92□□□□□ -0.34
RNF40-202ENST00000357890 UPF2Q9HAU5 1272 aaKnown RBP12.91□□□□□ -0.34
RNF40-202ENST00000357890 ARHGEF12Q9NZN5 1544 aa12.91□□□□□ -0.34
RNF40-202ENST00000357890 CLASP1Q7Z460 1538 aa12.9□□□□□ -0.34
RNF40-202ENST00000357890 BECN1Q14457 450 aa12.89□□□□□ -0.35
RNF40-202ENST00000357890 CYB5RLQ6IPT4 315 aa12.89□□□□□ -0.35
RNF40-202ENST00000357890 CRBNQ96SW2 442 aa12.89□□□□□ -0.35
RNF40-202ENST00000357890 MBD5Q9P267 1494 aa12.89□□□□□ -0.35
RNF40-202ENST00000357890 CHGAP10645 457 aaKnown RBP12.88□□□□□ -0.35
RNF40-202ENST00000357890 ABCC10Q5T3U5 1492 aa12.88□□□□□ -0.35
RNF40-202ENST00000357890 SPAG9O60271 1321 aaKnown RBP12.88□□□□□ -0.35
RNF40-202ENST00000357890 WASHC2CQ9Y4E1 1318 aa12.88□□□□□ -0.35
RNF40-202ENST00000357890 BACH2Q9BYV9 841 aa12.87□□□□□ -0.35
RNF40-202ENST00000357890 NEUROD2Q15784 382 aa12.87□□□□□ -0.35
RNF40-202ENST00000357890 L1TD1Q5T7N2 865 aaKnown RBP12.87□□□□□ -0.35
RNF40-202ENST00000357890 PLEKHH2Q8IVE3 1493 aa12.86□□□□□ -0.35
RNF40-202ENST00000357890 A0A0U1RQG5 324 aaPredicted RBP12.86□□□□□ -0.35
RNF40-202ENST00000357890 ABCA8O94911 1581 aa12.85□□□□□ -0.35
RNF40-202ENST00000357890 FAM135AQ9P2D6 1515 aa12.85□□□□□ -0.35
RNF40-202ENST00000357890 SHROOM2Q13796 1616 aa12.85□□□□□ -0.35
RNF40-202ENST00000357890 ADCY10Q96PN6 1610 aa12.85□□□□□ -0.35
RNF40-202ENST00000357890 ZMYND15Q9H091 742 aa12.85□□□□□ -0.35
RNF40-202ENST00000357890 KANK1Q14678 1352 aa12.85□□□□□ -0.35
RNF40-202ENST00000357890 ANP32BQ92688 251 aaKnown RBP12.84□□□□□ -0.35
RNF40-202ENST00000357890 CCDC146Q8IYE0 955 aa12.84□□□□□ -0.35
RNF40-202ENST00000357890 ABCC2Q92887 1545 aa12.84□□□□□ -0.35
RNF40-202ENST00000357890 KDM5CP41229 1560 aa12.84□□□□□ -0.35
RNF40-202ENST00000357890 PRAG1Q86YV5 1406 aa12.84□□□□□ -0.35
RNF40-202ENST00000357890 TNNT2P45379 298 aaPredicted RBP12.83□□□□□ -0.35
RNF40-202ENST00000357890 FAM43AQ8N2R8 423 aa12.83□□□□□ -0.35
RNF40-202ENST00000357890 SLC24A1O60721 1099 aa12.82□□□□□ -0.36
RNF40-202ENST00000357890 PODXL2Q9NZ53 605 aa12.82□□□□□ -0.36
RNF40-202ENST00000357890 ADAMTS8Q9UP79 889 aa12.82□□□□□ -0.36
RNF40-202ENST00000357890 ERBINQ96RT1 1412 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms