RNA–Protein interactions for RNA: ENST00000347613.8

CLCN3-201, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLCN3, Length 3,635 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-201ENST00000347613 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.33□□□□□ -1.08
CLCN3-201ENST00000347613 SHANK2Q9UPX8 1470 aa8.33□□□□□ -1.08
CLCN3-201ENST00000347613 CARD11Q9BXL7 1154 aa8.33□□□□□ -1.08
CLCN3-201ENST00000347613 RALGAPBQ86X10 1494 aa8.32□□□□□ -1.08
CLCN3-201ENST00000347613 PLEKHH2Q8IVE3 1493 aa8.32□□□□□ -1.08
CLCN3-201ENST00000347613 SHROOM2Q13796 1616 aa8.32□□□□□ -1.08
CLCN3-201ENST00000347613 ARHGEF5Q12774 1597 aa8.32□□□□□ -1.08
CLCN3-201ENST00000347613 NEFLP07196 543 aa8.32□□□□□ -1.08
CLCN3-201ENST00000347613 TSPY4P0CV99 314 aa8.32□□□□□ -1.08
CLCN3-201ENST00000347613 TSPY10P0CW01 314 aa8.32□□□□□ -1.08
CLCN3-201ENST00000347613 PNISRQ8TF01 805 aaKnown RBP8.31□□□□□ -1.08
CLCN3-201ENST00000347613 ZBED9Q6R2W3 1325 aa8.31□□□□□ -1.08
CLCN3-201ENST00000347613 E9PCH4 1651 aa8.31□□□□□ -1.08
CLCN3-201ENST00000347613 TRPM1Q7Z4N2 1603 aa8.31□□□□□ -1.08
CLCN3-201ENST00000347613 MYO5CQ9NQX4 1742 aa8.3□□□□□ -1.08
CLCN3-201ENST00000347613 CCDC141Q6ZP82 1450 aa8.3□□□□□ -1.08
CLCN3-201ENST00000347613 A2MP01023 1474 aa8.3□□□□□ -1.08
CLCN3-201ENST00000347613 ARHGAP5Q13017 1502 aa8.29□□□□□ -1.08
CLCN3-201ENST00000347613 DISP3Q9P2K9 1392 aa8.29□□□□□ -1.08
CLCN3-201ENST00000347613 PRAG1Q86YV5 1406 aa8.29□□□□□ -1.08
CLCN3-201ENST00000347613 PER1O15534 1290 aaPredicted RBP8.28□□□□□ -1.08
CLCN3-201ENST00000347613 SALL2Q9Y467 1007 aaPredicted RBP8.28□□□□□ -1.08
CLCN3-201ENST00000347613 TRAPPC8Q9Y2L5 1435 aa8.28□□□□□ -1.08
CLCN3-201ENST00000347613 PLEKHG5O94827 1062 aa8.28□□□□□ -1.08
CLCN3-201ENST00000347613 TESK2Q96S53 571 aa8.28□□□□□ -1.08
CLCN3-201ENST00000347613 ROCK2O75116 1388 aaKnown RBP8.27□□□□□ -1.09
CLCN3-201ENST00000347613 AFAP1Q8N556 730 aa8.27□□□□□ -1.09
CLCN3-201ENST00000347613 UNC13BO14795 1591 aa8.27□□□□□ -1.09
CLCN3-201ENST00000347613 ANP32EQ9BTT0 268 aa8.27□□□□□ -1.09
CLCN3-201ENST00000347613 ZCCHC11Q5TAX3 1644 aaKnown RBP8.27□□□□□ -1.09
CLCN3-201ENST00000347613 ABCC2Q92887 1545 aa8.26□□□□□ -1.09
CLCN3-201ENST00000347613 LRPPRCP42704 1394 aaKnown RBP8.25□□□□□ -1.09
CLCN3-201ENST00000347613 KLHL34Q8N239 644 aa8.25□□□□□ -1.09
CLCN3-201ENST00000347613 CDCA7LQ96GN5 454 aa8.24□□□□□ -1.09
CLCN3-201ENST00000347613 IQGAP3Q86VI3 1631 aa8.24□□□□□ -1.09
CLCN3-201ENST00000347613 MAST1Q9Y2H9 1570 aa8.24□□□□□ -1.09
CLCN3-201ENST00000347613 SMG6Q86US8 1419 aaKnown RBP8.24□□□□□ -1.09
CLCN3-201ENST00000347613 PPP4R2Q9NY27 417 aa8.24□□□□□ -1.09
CLCN3-201ENST00000347613 CLASP1Q7Z460 1538 aa8.24□□□□□ -1.09
CLCN3-201ENST00000347613 CCDC144AA2RUR9 1427 aa8.24□□□□□ -1.09
CLCN3-201ENST00000347613 RNF123Q5XPI4 1314 aa8.24□□□□□ -1.09
CLCN3-201ENST00000347613 CC2D1BQ5T0F9 858 aaKnown RBP8.24□□□□□ -1.09
CLCN3-201ENST00000347613 SKAP1Q86WV1 359 aa8.23□□□□□ -1.09
CLCN3-201ENST00000347613 TMC1Q8TDI8 760 aa8.22□□□□□ -1.09
CLCN3-201ENST00000347613 NUDCQ9Y266 331 aa8.22□□□□□ -1.09
CLCN3-201ENST00000347613 PLXNC1O60486 1568 aa8.22□□□□□ -1.09
CLCN3-201ENST00000347613 PRDM15P57071 1507 aaPredicted RBP8.22□□□□□ -1.09
CLCN3-201ENST00000347613 PLCH2O75038 1416 aa8.22□□□□□ -1.09
CLCN3-201ENST00000347613 PANK3Q9H999 370 aa8.22□□□□□ -1.09
CLCN3-201ENST00000347613 MAGI2Q86UL8 1455 aa8.21□□□□□ -1.09
CLCN3-201ENST00000347613 UGGT1Q9NYU2 1555 aa8.21□□□□□ -1.09
CLCN3-201ENST00000347613 PARD3Q8TEW0 1356 aa8.21□□□□□ -1.09
CLCN3-201ENST00000347613 GPRASP1Q5JY77 1395 aa8.21□□□□□ -1.1
CLCN3-201ENST00000347613 ABCC1P33527 1531 aa8.21□□□□□ -1.1
CLCN3-201ENST00000347613 ARID4BQ4LE39 1312 aaPredicted RBP8.2□□□□□ -1.1
CLCN3-201ENST00000347613 ARXQ96QS3 562 aa8.2□□□□□ -1.1
CLCN3-201ENST00000347613 MYBBP1AQ9BQG0 1328 aaKnown RBP8.2□□□□□ -1.1
CLCN3-201ENST00000347613 COL17A1Q9UMD9 1497 aaPredicted RBP8.2□□□□□ -1.1
CLCN3-201ENST00000347613 PLIN1O60240 522 aa8.19□□□□□ -1.1
CLCN3-201ENST00000347613 ATP10AO60312 1499 aa8.19□□□□□ -1.1
CLCN3-201ENST00000347613 CLTCL1P53675 1640 aa8.19□□□□□ -1.1
CLCN3-201ENST00000347613 DUOX2Q9NRD8 1548 aa8.19□□□□□ -1.1
CLCN3-201ENST00000347613 EXOC6Q8TAG9 804 aa8.18□□□□□ -1.1
CLCN3-201ENST00000347613 MADDQ8WXG6 1647 aa8.18□□□□□ -1.1
CLCN3-201ENST00000347613 RNF17Q9BXT8 1623 aaKnown RBP8.18□□□□□ -1.1
CLCN3-201ENST00000347613 ERBINQ96RT1 1412 aa8.18□□□□□ -1.1
CLCN3-201ENST00000347613 WDR7Q9Y4E6 1490 aa8.18□□□□□ -1.1
CLCN3-201ENST00000347613 RSPH4AQ5TD94 716 aa8.18□□□□□ -1.1
CLCN3-201ENST00000347613 ZFYVE16Q7Z3T8 1539 aa8.17□□□□□ -1.1
CLCN3-201ENST00000347613 BRD4O60885 1362 aaPredicted RBP8.17□□□□□ -1.1
CLCN3-201ENST00000347613 PAK3O75914 559 aaPredicted RBP8.17□□□□□ -1.1
CLCN3-201ENST00000347613 CFAP65Q6ZU64 1925 aaKnown RBP8.16□□□□□ -1.1
CLCN3-201ENST00000347613 IQGAP1P46940 1657 aa8.16□□□□□ -1.1
CLCN3-201ENST00000347613 MROH1Q8NDA8 1641 aa8.16□□□□□ -1.1
CLCN3-201ENST00000347613 EIF5BO60841 1220 aaKnown RBP8.16□□□□□ -1.1
CLCN3-201ENST00000347613 RALBP1Q15311 655 aa8.16□□□□□ -1.1
CLCN3-201ENST00000347613 C20orf194Q5TEA3 1177 aa8.16□□□□□ -1.1
CLCN3-201ENST00000347613 ADAMTS8Q9UP79 889 aa8.16□□□□□ -1.1
CLCN3-201ENST00000347613 MYOM1P52179 1685 aa8.16□□□□□ -1.1
CLCN3-201ENST00000347613 LAMC1P11047 1609 aa8.15□□□□□ -1.1
CLCN3-201ENST00000347613 FANCIQ9NVI1 1328 aa8.15□□□□□ -1.1
CLCN3-201ENST00000347613 EFCAB2Q5VUJ9 269 aa8.15□□□□□ -1.1
CLCN3-201ENST00000347613 SPHKAPQ2M3C7 1700 aa8.15□□□□□ -1.1
CLCN3-201ENST00000347613 CEP152O94986 1710 aa8.15□□□□□ -1.11
CLCN3-201ENST00000347613 KCNA4P22459 653 aa8.15□□□□□ -1.11
CLCN3-201ENST00000347613 ERICH6BQ5W0A0 696 aa8.15□□□□□ -1.11
CLCN3-201ENST00000347613 SPAG9O60271 1321 aaKnown RBP8.14□□□□□ -1.11
CLCN3-201ENST00000347613 ADGRF5Q8IZF2 1346 aa8.14□□□□□ -1.11
CLCN3-201ENST00000347613 NLRP13Q86W25 1043 aa8.14□□□□□ -1.11
CLCN3-201ENST00000347613 DEPDC5O75140 1603 aa8.14□□□□□ -1.11
CLCN3-201ENST00000347613 MROH2AA6NES4 1674 aa8.14□□□□□ -1.11
CLCN3-201ENST00000347613 UHRF1BP1LA0JNW5 1464 aa8.14□□□□□ -1.11
CLCN3-201ENST00000347613 CFAP70Q5T0N1 1121 aa8.14□□□□□ -1.11
CLCN3-201ENST00000347613 SCAPERQ9BY12 1400 aa8.14□□□□□ -1.11
CLCN3-201ENST00000347613 KTN1Q86UP2 1357 aaKnown RBP8.14□□□□□ -1.11
CLCN3-201ENST00000347613 RRP1P56182 461 aaKnown RBP8.14□□□□□ -1.11
CLCN3-201ENST00000347613 AMER1Q5JTC6 1135 aaPredicted RBP8.14□□□□□ -1.11
CLCN3-201ENST00000347613 SPINK5Q9NQ38 1064 aaPredicted RBP8.14□□□□□ -1.11
CLCN3-201ENST00000347613 PLEKHH1Q9ULM0 1364 aa8.13□□□□□ -1.11
CLCN3-201ENST00000347613 PTPRTO14522 1441 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms