RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 ZNF592Q92610 1267 aa21.62■■□□□ 1.05
SMAD4-201ENST00000342988 RGL3Q3MIN7 710 aa21.62■■□□□ 1.05
SMAD4-201ENST00000342988 FRAT2O75474 233 aaPredicted RBP21.61■■□□□ 1.05
SMAD4-201ENST00000342988 NEFHP12036 1026 aa21.61■■□□□ 1.05
SMAD4-201ENST00000342988 SYNE3Q6ZMZ3 975 aa21.6■■□□□ 1.05
SMAD4-201ENST00000342988 APBB1O00213 710 aa21.6■■□□□ 1.05
SMAD4-201ENST00000342988 TMF1P82094 1093 aa21.6■■□□□ 1.05
SMAD4-201ENST00000342988 HIRIP3Q9BW71 556 aaPredicted RBP21.6■■□□□ 1.05
SMAD4-201ENST00000342988 ITPRIPQ8IWB1 547 aa21.6■■□□□ 1.05
SMAD4-201ENST00000342988 SEPT11Q9NVA2 429 aaKnown RBP21.59■■□□□ 1.05
SMAD4-201ENST00000342988 NAP1L1P55209 391 aaKnown RBP21.59■■□□□ 1.05
SMAD4-201ENST00000342988 R3HCC1Q9Y3T6 440 aaKnown RBP21.59■■□□□ 1.05
SMAD4-201ENST00000342988 TRIM29Q14134 588 aa21.59■■□□□ 1.05
SMAD4-201ENST00000342988 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.59■■□□□ 1.05
SMAD4-201ENST00000342988 CC2D1BQ5T0F9 858 aaKnown RBP21.59■■□□□ 1.05
SMAD4-201ENST00000342988 STK31Q9BXU1 1019 aa21.59■■□□□ 1.05
SMAD4-201ENST00000342988 NOL10Q9BSC4 688 aaKnown RBP21.57■■□□□ 1.04
SMAD4-201ENST00000342988 CPLX2Q6PUV4 134 aaKnown RBP21.57■■□□□ 1.04
SMAD4-201ENST00000342988 MEX3CQ5U5Q3 659 aaKnown RBP21.57■■□□□ 1.04
SMAD4-201ENST00000342988 TOMM22Q9NS69 142 aa21.55■■□□□ 1.04
SMAD4-201ENST00000342988 EZRP15311 586 aaKnown RBP21.54■■□□□ 1.04
SMAD4-201ENST00000342988 ERLIN2O94905 339 aa21.53■■□□□ 1.04
SMAD4-201ENST00000342988 PLCD4Q9BRC7 762 aa21.53■■□□□ 1.04
SMAD4-201ENST00000342988 PABPN1Q86U42 306 aaKnown RBP eCLIP21.53■■□□□ 1.04
SMAD4-201ENST00000342988 LEKR1Q6ZMV7 388 aa21.53■■□□□ 1.04
SMAD4-201ENST00000342988 SEPT7Q16181 437 aaKnown RBP21.53■■□□□ 1.04
SMAD4-201ENST00000342988 GOLGA6L10A6NI86 522 aa21.52■■□□□ 1.03
SMAD4-201ENST00000342988 ZNF330Q9Y3S2 320 aaPredicted RBP21.52■■□□□ 1.03
SMAD4-201ENST00000342988 MNS1Q8NEH6 495 aa21.51■■□□□ 1.03
SMAD4-201ENST00000342988 WWC2Q6AWC2 1192 aa21.51■■□□□ 1.03
SMAD4-201ENST00000342988 MORC1Q86VD1 984 aa21.51■■□□□ 1.03
SMAD4-201ENST00000342988 MFAP1P55081 439 aaKnown RBP21.51■■□□□ 1.03
SMAD4-201ENST00000342988 RRP7BPQ9NSQ0 103 aa21.51■■□□□ 1.03
SMAD4-201ENST00000342988 NAT10Q9H0A0 1025 aaKnown RBP21.5■■□□□ 1.03
SMAD4-201ENST00000342988 HSP90AB3PQ58FF7 597 aa21.49■■□□□ 1.03
SMAD4-201ENST00000342988 SRPK2P78362 688 aaKnown RBP21.49■■□□□ 1.03
SMAD4-201ENST00000342988 ZFYVE27Q5T4F4 411 aa21.49■■□□□ 1.03
SMAD4-201ENST00000342988 KTN1Q86UP2 1357 aaKnown RBP21.49■■□□□ 1.03
SMAD4-201ENST00000342988 CHMP7Q8WUX9 453 aaPredicted RBP21.49■■□□□ 1.03
SMAD4-201ENST00000342988 CLASRPQ8N2M8 674 aaKnown RBP21.48■■□□□ 1.03
SMAD4-201ENST00000342988 USP8P40818 1118 aa21.47■■□□□ 1.03
SMAD4-201ENST00000342988 DIAPH3Q9NSV4 1193 aa21.47■■□□□ 1.03
SMAD4-201ENST00000342988 CWC22Q9HCG8 908 aaKnown RBP21.47■■□□□ 1.03
SMAD4-201ENST00000342988 PAF1Q8N7H5 531 aa21.47■■□□□ 1.03
SMAD4-201ENST00000342988 KIAA0754O94854 1291 aa21.47■■□□□ 1.03
SMAD4-201ENST00000342988 EIF3AQ14152 1382 aaKnown RBP21.46■■□□□ 1.03
SMAD4-201ENST00000342988 HDGFL2Q7Z4V5 671 aaPredicted RBP21.46■■□□□ 1.03
SMAD4-201ENST00000342988 IPO9Q96P70 1041 aaKnown RBP21.46■■□□□ 1.03
SMAD4-201ENST00000342988 MCTP1Q6DN14 999 aa21.45■■□□□ 1.03
SMAD4-201ENST00000342988 PLEKHD1A6NEE1 506 aa21.45■■□□□ 1.02
SMAD4-201ENST00000342988 RBM19Q9Y4C8 960 aaKnown RBP21.45■■□□□ 1.02
SMAD4-201ENST00000342988 CCP110O43303 1012 aa21.45■■□□□ 1.02
SMAD4-201ENST00000342988 OFD1O75665 1012 aa21.44■■□□□ 1.02
SMAD4-201ENST00000342988 DDX49Q9Y6V7 483 aaKnown RBP21.43■■□□□ 1.02
SMAD4-201ENST00000342988 GTF2E1P29083 439 aaPredicted RBP21.43■■□□□ 1.02
SMAD4-201ENST00000342988 TSPYL1Q9H0U9 437 aa21.43■■□□□ 1.02
SMAD4-201ENST00000342988 GBP2P32456 591 aaPredicted RBP21.42■■□□□ 1.02
SMAD4-201ENST00000342988 FEZ1Q99689 392 aa21.42■■□□□ 1.02
SMAD4-201ENST00000342988 FAM13BQ9NYF5 915 aa21.42■■□□□ 1.02
SMAD4-201ENST00000342988 LMOD3Q0VAK6 560 aa21.41■■□□□ 1.02
SMAD4-201ENST00000342988 ENOX2Q16206 610 aaKnown RBP21.41■■□□□ 1.02
SMAD4-201ENST00000342988 RABEP1Q15276 862 aa21.4■■□□□ 1.02
SMAD4-201ENST00000342988 SASS6Q6UVJ0 657 aa21.4■■□□□ 1.02
SMAD4-201ENST00000342988 CSB-PGBD3P0DP91 1061 aa21.39■■□□□ 1.02
SMAD4-201ENST00000342988 TXLNBQ8N3L3 684 aa21.39■■□□□ 1.01
SMAD4-201ENST00000342988 RCAN3Q9UKA8 241 aa21.39■■□□□ 1.01
SMAD4-201ENST00000342988 RUFY2Q8WXA3 655 aa21.38■■□□□ 1.01
SMAD4-201ENST00000342988 OLFM4Q6UX06 510 aa21.38■■□□□ 1.01
SMAD4-201ENST00000342988 ZCCHC6Q5VYS8 1495 aaKnown RBP21.37■■□□□ 1.01
SMAD4-201ENST00000342988 NOL8Q76FK4 1167 aaKnown RBP21.37■■□□□ 1.01
SMAD4-201ENST00000342988 ERICH2A1L162 156 aa21.37■■□□□ 1.01
SMAD4-201ENST00000342988 SOX12O15370 315 aa21.37■■□□□ 1.01
SMAD4-201ENST00000342988 CLIP1P30622 1438 aa21.37■■□□□ 1.01
SMAD4-201ENST00000342988 IFT57Q9NWB7 429 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 SCRIBQ14160 1630 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 CGNL1Q0VF96 1302 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 SYCP1Q15431 976 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 CHMP5Q9NZZ3 219 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 PHLDB1Q86UU1 1377 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 SENP3-EIF4A1A0A087X0R7 540 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 TAF3Q5VWG9 929 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 LUC7LQ9NQ29 371 aaKnown RBP21.36■■□□□ 1.01
SMAD4-201ENST00000342988 ABCC9O60706 1549 aa21.36■■□□□ 1.01
SMAD4-201ENST00000342988 KCNH8Q96L42 1107 aa21.35■■□□□ 1.01
SMAD4-201ENST00000342988 BRMS1Q9HCU9 246 aa21.35■■□□□ 1.01
SMAD4-201ENST00000342988 CT47B1P0C2W7 299 aaPredicted RBP21.35■■□□□ 1.01
SMAD4-201ENST00000342988 PPM1EQ8WY54 764 aa21.35■■□□□ 1.01
SMAD4-201ENST00000342988 SMC4Q9NTJ3 1288 aa21.35■■□□□ 1.01
SMAD4-201ENST00000342988 DHX8Q14562 1220 aaKnown RBP21.34■■□□□ 1.01
SMAD4-201ENST00000342988 SMARCE1Q969G3 411 aa21.34■■□□□ 1.01
SMAD4-201ENST00000342988 SAFBQ15424 915 aaKnown RBP eCLIP21.34■■□□□ 1.01
SMAD4-201ENST00000342988 CPLX1O14810 134 aa21.34■■□□□ 1.01
SMAD4-201ENST00000342988 TRDNQ13061 729 aa21.34■■□□□ 1.01
SMAD4-201ENST00000342988 PAK3O75914 559 aaPredicted RBP21.33■■□□□ 1.01
SMAD4-201ENST00000342988 AXDND1Q5T1B0 1012 aaPredicted RBP21.32■■□□□ 1
SMAD4-201ENST00000342988 DEF6Q9H4E7 631 aa21.32■■□□□ 1
SMAD4-201ENST00000342988 NF2P35240 595 aa21.32■■□□□ 1
SMAD4-201ENST00000342988 ZKSCAN1P17029 563 aaPredicted RBP21.32■■□□□ 1
SMAD4-201ENST00000342988 ANKRD62A6NC57 917 aa21.32■■□□□ 1
SMAD4-201ENST00000342988 GSE1Q14687 1217 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms