RNA–Protein interactions for RNA: ENST00000333896.5

SPTBN1-201, Transcript of spectrin beta, non-erythrocytic 1, humanhuman

TSL 1 (best) BASIC

Gene SPTBN1, Length 9,075 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTBN1-201ENST00000333896 ERCC4Q92889 916 aaPredicted RBP12.67□□□□□ -0.38
SPTBN1-201ENST00000333896 FOXD4L5Q5VV16 416 aaPredicted RBP12.67□□□□□ -0.38
SPTBN1-201ENST00000333896 FOXD4L4Q8WXT5 416 aaPredicted RBP12.67□□□□□ -0.38
SPTBN1-201ENST00000333896 DDX49Q9Y6V7 483 aaKnown RBP12.67□□□□□ -0.38
SPTBN1-201ENST00000333896 LMOD2Q6P5Q4 547 aa12.67□□□□□ -0.38
SPTBN1-201ENST00000333896 NOL8Q76FK4 1167 aaKnown RBP12.66□□□□□ -0.38
SPTBN1-201ENST00000333896 AXDND1Q5T1B0 1012 aaPredicted RBP12.66□□□□□ -0.38
SPTBN1-201ENST00000333896 HMGB1P1B2RPK0 211 aaPredicted RBP12.66□□□□□ -0.38
SPTBN1-201ENST00000333896 IPO8O15397 1037 aaKnown RBP12.66□□□□□ -0.38
SPTBN1-201ENST00000333896 TNIKQ9UKE5 1360 aa12.66□□□□□ -0.38
SPTBN1-201ENST00000333896 NFKBIBQ15653 356 aa12.65□□□□□ -0.38
SPTBN1-201ENST00000333896 MFAP1P55081 439 aaKnown RBP12.65□□□□□ -0.38
SPTBN1-201ENST00000333896 INCENPQ9NQS7 918 aa12.65□□□□□ -0.38
SPTBN1-201ENST00000333896 ROCK2O75116 1388 aaKnown RBP12.65□□□□□ -0.38
SPTBN1-201ENST00000333896 CCP110O43303 1012 aa12.65□□□□□ -0.38
SPTBN1-201ENST00000333896 KTN1Q86UP2 1357 aaKnown RBP12.65□□□□□ -0.38
SPTBN1-201ENST00000333896 ZCCHC6Q5VYS8 1495 aaKnown RBP12.65□□□□□ -0.39
SPTBN1-201ENST00000333896 IRX3P78415 501 aaPredicted RBP12.64□□□□□ -0.39
SPTBN1-201ENST00000333896 CHMP4CQ96CF2 233 aa12.64□□□□□ -0.39
SPTBN1-201ENST00000333896 TRIM6-TRIM34B2RNG4 842 aa12.64□□□□□ -0.39
SPTBN1-201ENST00000333896 FAM107BQ9H098 131 aa12.64□□□□□ -0.39
SPTBN1-201ENST00000333896 SF3A1Q15459 793 aaKnown RBP12.64□□□□□ -0.39
SPTBN1-201ENST00000333896 RALBP1Q15311 655 aa12.64□□□□□ -0.39
SPTBN1-201ENST00000333896 CHMP5Q9NZZ3 219 aa12.63□□□□□ -0.39
SPTBN1-201ENST00000333896 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.63□□□□□ -0.39
SPTBN1-201ENST00000333896 HOMER1Q86YM7 354 aa12.63□□□□□ -0.39
SPTBN1-201ENST00000333896 BCL11BQ9C0K0 894 aaPredicted RBP12.63□□□□□ -0.39
SPTBN1-201ENST00000333896 PDIA4P13667 645 aaKnown RBP12.63□□□□□ -0.39
SPTBN1-201ENST00000333896 RGL3Q3MIN7 710 aa12.63□□□□□ -0.39
SPTBN1-201ENST00000333896 MARCH6O60337 910 aa12.62□□□□□ -0.39
SPTBN1-201ENST00000333896 ZNF526Q8TF50 670 aaPredicted RBP12.62□□□□□ -0.39
SPTBN1-201ENST00000333896 GPATCH3Q96I76 525 aa12.62□□□□□ -0.39
SPTBN1-201ENST00000333896 PCMTD1Q96MG8 357 aaPredicted RBP12.62□□□□□ -0.39
SPTBN1-201ENST00000333896 SSR1P43307 286 aaKnown RBP12.62□□□□□ -0.39
SPTBN1-201ENST00000333896 LETM1O95202 739 aaPredicted RBP12.62□□□□□ -0.39
SPTBN1-201ENST00000333896 CTR9Q6PD62 1173 aa12.62□□□□□ -0.39
SPTBN1-201ENST00000333896 AAMPQ13685 434 aa12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 MTUS2Q5JR59 1369 aa12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 BAZ1AQ9NRL2 1556 aaPredicted RBP12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 IL27Q8NEV9 243 aa12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 EIF3AQ14152 1382 aaKnown RBP12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 BECN2A8MW95 431 aa12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 NPM1P06748 294 aaKnown RBP eCLIP12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 RB1CC1Q8TDY2 1594 aa12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 TSPY4P0CV99 314 aa12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 TSPY10P0CW01 314 aa12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 R3HCC1Q9Y3T6 440 aaKnown RBP12.61□□□□□ -0.39
SPTBN1-201ENST00000333896 DDX11Q96FC9 970 aa12.6□□□□□ -0.39
SPTBN1-201ENST00000333896 CAGE1Q8TC20 777 aa12.6□□□□□ -0.39
SPTBN1-201ENST00000333896 H3BQV1 296 aa12.6□□□□□ -0.39
SPTBN1-201ENST00000333896 IFFO2Q5TF58 517 aa12.6□□□□□ -0.39
SPTBN1-201ENST00000333896 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.6□□□□□ -0.393e-6■■■■■ 279.5
SPTBN1-201ENST00000333896 DYDC1Q8WWB3 177 aa12.6□□□□□ -0.39
SPTBN1-201ENST00000333896 RNF20Q5VTR2 975 aa12.59□□□□□ -0.39
SPTBN1-201ENST00000333896 NUCB2P80303 420 aa12.59□□□□□ -0.39
SPTBN1-201ENST00000333896 GOLGA6L7A0A1B0GV03 622 aa12.59□□□□□ -0.39
SPTBN1-201ENST00000333896 IPO7O95373 1038 aaKnown RBP12.59□□□□□ -0.39
SPTBN1-201ENST00000333896 CCNB3Q8WWL7 1395 aa12.58□□□□□ -0.39
SPTBN1-201ENST00000333896 FOXD4L6Q3SYB3 417 aaPredicted RBP12.58□□□□□ -0.39
SPTBN1-201ENST00000333896 FOXD4L3Q6VB84 417 aaPredicted RBP12.58□□□□□ -0.39
SPTBN1-201ENST00000333896 CNKSR2Q8WXI2 1034 aa12.58□□□□□ -0.39
SPTBN1-201ENST00000333896 BRPF3Q9ULD4 1205 aa12.58□□□□□ -0.4
SPTBN1-201ENST00000333896 ITPRIPQ8IWB1 547 aa12.58□□□□□ -0.4
SPTBN1-201ENST00000333896 GORABQ5T7V8 394 aa12.58□□□□□ -0.4
SPTBN1-201ENST00000333896 ZRSR2Q15696 482 aaKnown RBP12.57□□□□□ -0.4
SPTBN1-201ENST00000333896 KIAA0754O94854 1291 aa12.57□□□□□ -0.4
SPTBN1-201ENST00000333896 UQCRHLA0A096LP55 91 aa12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 UQCRHP07919 91 aa12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 NAP1L1P55209 391 aaKnown RBP12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 GIMAP7Q8NHV1 300 aa12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 BBXQ8WY36 941 aaPredicted RBP12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 CARD11Q9BXL7 1154 aa12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 CCDC9Q9Y3X0 531 aaKnown RBP12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 ESPNB1AK53 854 aa12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 MNS1Q8NEH6 495 aa12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 EIF3JO75822 258 aaKnown RBP12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 CHMP3Q9Y3E7 222 aa12.56□□□□□ -0.4
SPTBN1-201ENST00000333896 RRP7BPQ9NSQ0 103 aa12.55□□□□□ -0.4
SPTBN1-201ENST00000333896 RTF1Q92541 710 aaKnown RBP12.55□□□□□ -0.4
SPTBN1-201ENST00000333896 DYNC1I1O14576 645 aa12.55□□□□□ -0.4
SPTBN1-201ENST00000333896 SKIDA1Q1XH10 827 aa12.55□□□□□ -0.4
SPTBN1-201ENST00000333896 DHX37Q8IY37 1157 aaKnown RBP12.54□□□□□ -0.4
SPTBN1-201ENST00000333896 SCRIBQ14160 1630 aa12.54□□□□□ -0.4
SPTBN1-201ENST00000333896 SETD5Q9C0A6 1442 aa12.54□□□□□ -0.4
SPTBN1-201ENST00000333896 TMX4Q9H1E5 349 aaPredicted RBP12.54□□□□□ -0.4
SPTBN1-201ENST00000333896 MBD3O95983 291 aa12.54□□□□□ -0.4
SPTBN1-201ENST00000333896 TIGD1Q96MW7 591 aa12.54□□□□□ -0.4
SPTBN1-201ENST00000333896 FHAD1B1AJZ9 1412 aa12.53□□□□□ -0.4
SPTBN1-201ENST00000333896 ODF2Q5BJF6 829 aa12.53□□□□□ -0.4
SPTBN1-201ENST00000333896 IFT57Q9NWB7 429 aa12.53□□□□□ -0.4
SPTBN1-201ENST00000333896 TCEAL9Q9UHQ7 104 aa12.53□□□□□ -0.4
SPTBN1-201ENST00000333896 GTPBP4Q9BZE4 634 aaKnown RBP12.53□□□□□ -0.4
SPTBN1-201ENST00000333896 NAT10Q9H0A0 1025 aaKnown RBP12.53□□□□□ -0.4
SPTBN1-201ENST00000333896 POGKQ9P215 609 aa12.53□□□□□ -0.4
SPTBN1-201ENST00000333896 SOX12O15370 315 aa12.52□□□□□ -0.4
SPTBN1-201ENST00000333896 NEXNQ0ZGT2 675 aa12.52□□□□□ -0.4
SPTBN1-201ENST00000333896 MAPK8IP2Q13387 824 aaPredicted RBP12.52□□□□□ -0.41
SPTBN1-201ENST00000333896 ZNF330Q9Y3S2 320 aaPredicted RBP12.52□□□□□ -0.41
SPTBN1-201ENST00000333896 ANKRD20A12PQ8NF67 263 aa12.51□□□□□ -0.41
SPTBN1-201ENST00000333896 MCM5P33992 734 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms