RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 NBPF1Q3BBV0 1214 aa23.4■■□□□ 1.34
PTP4A3-201ENST00000329397 PAK3O75914 559 aaPredicted RBP23.38■■□□□ 1.33
PTP4A3-201ENST00000329397 ABCA8O94911 1581 aa23.38■■□□□ 1.33
PTP4A3-201ENST00000329397 NUP160Q12769 1436 aa23.38■■□□□ 1.33
PTP4A3-201ENST00000329397 ARID4BQ4LE39 1312 aaPredicted RBP23.38■■□□□ 1.33
PTP4A3-201ENST00000329397 RNF123Q5XPI4 1314 aa23.38■■□□□ 1.33
PTP4A3-201ENST00000329397 MYBBP1AQ9BQG0 1328 aaKnown RBP23.35■■□□□ 1.33
PTP4A3-201ENST00000329397 SHANK2Q9UPX8 1470 aa23.34■■□□□ 1.33
PTP4A3-201ENST00000329397 ARHGEF12Q9NZN5 1544 aa23.34■■□□□ 1.33
PTP4A3-201ENST00000329397 NBR1Q14596 966 aa23.33■■□□□ 1.33
PTP4A3-201ENST00000329397 LRPPRCP42704 1394 aaKnown RBP23.31■■□□□ 1.32
PTP4A3-201ENST00000329397 CC2D1BQ5T0F9 858 aaKnown RBP23.31■■□□□ 1.32
PTP4A3-201ENST00000329397 ANO8Q9HCE9 1232 aaPredicted RBP23.31■■□□□ 1.32
PTP4A3-201ENST00000329397 FAM135AQ9P2D6 1515 aa23.3■■□□□ 1.32
PTP4A3-201ENST00000329397 EXOC6Q8TAG9 804 aa23.3■■□□□ 1.32
PTP4A3-201ENST00000329397 NOP58Q9Y2X3 529 aaKnown RBP23.29■■□□□ 1.32
PTP4A3-201ENST00000329397 BRD4O60885 1362 aaPredicted RBP23.29■■□□□ 1.32
PTP4A3-201ENST00000329397 CDCA7LQ96GN5 454 aa23.29■■□□□ 1.32
PTP4A3-201ENST00000329397 PTPRGP23470 1445 aa23.28■■□□□ 1.32
PTP4A3-201ENST00000329397 SAMD9LQ8IVG5 1584 aa23.28■■□□□ 1.32
PTP4A3-201ENST00000329397 KDM5DQ9BY66 1539 aa23.28■■□□□ 1.32
PTP4A3-201ENST00000329397 RALBP1Q15311 655 aa23.28■■□□□ 1.32
PTP4A3-201ENST00000329397 CCDC144AA2RUR9 1427 aa23.27■■□□□ 1.32
PTP4A3-201ENST00000329397 RRP1P56182 461 aaKnown RBP23.25■■□□□ 1.31
PTP4A3-201ENST00000329397 CDC42BPBQ9Y5S2 1711 aa23.25■■□□□ 1.31
PTP4A3-201ENST00000329397 E9PCH4 1651 aa23.25■■□□□ 1.31
PTP4A3-201ENST00000329397 PRAG1Q86YV5 1406 aa23.25■■□□□ 1.31
PTP4A3-201ENST00000329397 CCDC141Q6ZP82 1450 aa23.25■■□□□ 1.31
PTP4A3-201ENST00000329397 RCAN3Q9UKA8 241 aa23.23■■□□□ 1.31
PTP4A3-201ENST00000329397 KTN1Q86UP2 1357 aaKnown RBP23.23■■□□□ 1.31
PTP4A3-201ENST00000329397 DISP3Q9P2K9 1392 aa23.23■■□□□ 1.31
PTP4A3-201ENST00000329397 NLRP13Q86W25 1043 aa23.23■■□□□ 1.31
PTP4A3-201ENST00000329397 SYCP2Q9BX26 1530 aa23.23■■□□□ 1.31
PTP4A3-201ENST00000329397 PLEKHG5O94827 1062 aa23.22■■□□□ 1.31
PTP4A3-201ENST00000329397 PLIN1O60240 522 aa23.22■■□□□ 1.31
PTP4A3-201ENST00000329397 TRPM1Q7Z4N2 1603 aa23.21■■□□□ 1.31
PTP4A3-201ENST00000329397 NPM2Q86SE8 214 aaKnown RBP23.21■■□□□ 1.31
PTP4A3-201ENST00000329397 PLA2R1Q13018 1463 aa23.21■■□□□ 1.31
PTP4A3-201ENST00000329397 PER1O15534 1290 aaPredicted RBP23.21■■□□□ 1.31
PTP4A3-201ENST00000329397 ARHGEF5Q12774 1597 aa23.2■■□□□ 1.3
PTP4A3-201ENST00000329397 SKAP1Q86WV1 359 aa23.2■■□□□ 1.3
PTP4A3-201ENST00000329397 A2MP01023 1474 aa23.19■■□□□ 1.3
PTP4A3-201ENST00000329397 PARD3Q8TEW0 1356 aa23.19■■□□□ 1.3
PTP4A3-201ENST00000329397 ANP32AP39687 249 aaKnown RBP23.18■■□□□ 1.3
PTP4A3-201ENST00000329397 PANK3Q9H999 370 aa23.18■■□□□ 1.3
PTP4A3-201ENST00000329397 ARHGAP5Q13017 1502 aa23.16■■□□□ 1.3
PTP4A3-201ENST00000329397 PLEKHH2Q8IVE3 1493 aa23.16■■□□□ 1.3
PTP4A3-201ENST00000329397 TESK2Q96S53 571 aa23.16■■□□□ 1.3
PTP4A3-201ENST00000329397 PREX2Q70Z35 1606 aa23.16■■□□□ 1.3
PTP4A3-201ENST00000329397 DEKP35659 375 aaKnown RBP23.16■■□□□ 1.3
PTP4A3-201ENST00000329397 TTC37Q6PGP7 1564 aa23.15■■□□□ 1.3
PTP4A3-201ENST00000329397 IPO9Q96P70 1041 aaKnown RBP23.13■■□□□ 1.29
PTP4A3-201ENST00000329397 COL17A1Q9UMD9 1497 aaPredicted RBP23.1■■□□□ 1.29
PTP4A3-201ENST00000329397 MYO5CQ9NQX4 1742 aa23.1■■□□□ 1.29
PTP4A3-201ENST00000329397 ZBTB47Q9UFB7 747 aaPredicted RBP23.08■■□□□ 1.29
PTP4A3-201ENST00000329397 ERBINQ96RT1 1412 aa23.08■■□□□ 1.29
PTP4A3-201ENST00000329397 UBE2Q2Q8WVN8 375 aa23.07■■□□□ 1.28
PTP4A3-201ENST00000329397 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.07■■□□□ 1.281e-6■■■■■ 26.8
PTP4A3-201ENST00000329397 GPRASP1Q5JY77 1395 aa23.05■■□□□ 1.28
PTP4A3-201ENST00000329397 RSPH4AQ5TD94 716 aa23.05■■□□□ 1.28
PTP4A3-201ENST00000329397 TMF1P82094 1093 aa23.05■■□□□ 1.28
PTP4A3-201ENST00000329397 PRDM15P57071 1507 aaPredicted RBP23.04■■□□□ 1.28
PTP4A3-201ENST00000329397 CRBNQ96SW2 442 aa23.04■■□□□ 1.28
PTP4A3-201ENST00000329397 UNC13BO14795 1591 aa23.04■■□□□ 1.28
PTP4A3-201ENST00000329397 ERCC6L2Q5T890 1561 aa23.03■■□□□ 1.28
PTP4A3-201ENST00000329397 C20orf194Q5TEA3 1177 aa23.03■■□□□ 1.28
PTP4A3-201ENST00000329397 ADAMTS8Q9UP79 889 aa23.03■■□□□ 1.28
PTP4A3-201ENST00000329397 PDE4AP27815 886 aa23.02■■□□□ 1.28
PTP4A3-201ENST00000329397 PDE3BQ13370 1112 aa23.01■■□□□ 1.27
PTP4A3-201ENST00000329397 IQGAP3Q86VI3 1631 aa22.98■■□□□ 1.27
PTP4A3-201ENST00000329397 CHD1O14646 1710 aa22.98■■□□□ 1.27
PTP4A3-201ENST00000329397 LAS1LQ9Y4W2 734 aaKnown RBP22.98■■□□□ 1.27
PTP4A3-201ENST00000329397 BLMP54132 1417 aaPredicted RBP22.97■■□□□ 1.27
PTP4A3-201ENST00000329397 TCERG1O14776 1098 aaKnown RBP22.96■■□□□ 1.27
PTP4A3-201ENST00000329397 MAGI2Q86UL8 1455 aa22.96■■□□□ 1.27
PTP4A3-201ENST00000329397 MAST1Q9Y2H9 1570 aa22.94■■□□□ 1.26
PTP4A3-201ENST00000329397 BACH2Q9BYV9 841 aa22.94■■□□□ 1.26
PTP4A3-201ENST00000329397 KNSTRNQ9Y448 316 aa22.93■■□□□ 1.26
PTP4A3-201ENST00000329397 PLEKHH1Q9ULM0 1364 aa22.93■■□□□ 1.26
PTP4A3-201ENST00000329397 TRAPPC8Q9Y2L5 1435 aa22.92■■□□□ 1.26
PTP4A3-201ENST00000329397 PPP2R1AP30153 589 aa22.92■■□□□ 1.26
PTP4A3-201ENST00000329397 AFAP1Q8N556 730 aa22.92■■□□□ 1.26
PTP4A3-201ENST00000329397 PLXNC1O60486 1568 aa22.91■■□□□ 1.26
PTP4A3-201ENST00000329397 WASHC2CQ9Y4E1 1318 aa22.91■■□□□ 1.26
PTP4A3-201ENST00000329397 EIF2AK4Q9P2K8 1649 aaKnown RBP22.91■■□□□ 1.26
PTP4A3-201ENST00000329397 RTL5Q5HYW3 569 aaPredicted RBP22.91■■□□□ 1.26
PTP4A3-201ENST00000329397 CCDC146Q8IYE0 955 aa22.91■■□□□ 1.26
PTP4A3-201ENST00000329397 MYT1LQ9UL68 1186 aa22.91■■□□□ 1.26
PTP4A3-201ENST00000329397 DUOX2Q9NRD8 1548 aa22.91■■□□□ 1.26
PTP4A3-201ENST00000329397 WDR7Q9Y4E6 1490 aa22.9■■□□□ 1.26
PTP4A3-201ENST00000329397 LAMC1P11047 1609 aa22.9■■□□□ 1.26
PTP4A3-201ENST00000329397 WDR43Q15061 677 aaKnown RBP eCLIP22.89■■□□□ 1.26
PTP4A3-201ENST00000329397 ZMYM4Q5VZL5 1548 aa22.88■■□□□ 1.25
PTP4A3-201ENST00000329397 AMER1Q5JTC6 1135 aaPredicted RBP22.87■■□□□ 1.25
PTP4A3-201ENST00000329397 EFCAB2Q5VUJ9 269 aa22.86■■□□□ 1.25
PTP4A3-201ENST00000329397 ABCC2Q92887 1545 aa22.86■■□□□ 1.25
PTP4A3-201ENST00000329397 RNF17Q9BXT8 1623 aaKnown RBP22.85■■□□□ 1.25
PTP4A3-201ENST00000329397 DUSP27Q5VZP5 1158 aa22.84■■□□□ 1.25
PTP4A3-201ENST00000329397 ATP10AO60312 1499 aa22.83■■□□□ 1.25
PTP4A3-201ENST00000329397 MADDQ8WXG6 1647 aa22.83■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms