RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 IRX6P78412 446 aaPredicted RBP22.11■■□□□ 1.13
USHBP1-202ENST00000324554 ZNF326Q5BKZ1 582 aaKnown RBP22.11■■□□□ 1.13
USHBP1-202ENST00000324554 UHRF1BP1Q6BDS2 1440 aa22.11■■□□□ 1.13
USHBP1-202ENST00000324554 KDM5CP41229 1560 aa22.1■■□□□ 1.13
USHBP1-202ENST00000324554 ABCC1P33527 1531 aa22.1■■□□□ 1.13
USHBP1-202ENST00000324554 BCORL1Q5H9F3 1711 aa22.1■■□□□ 1.13
USHBP1-202ENST00000324554 MRS2Q9HD23 443 aa22.09■■□□□ 1.13
USHBP1-202ENST00000324554 SPAG9O60271 1321 aaKnown RBP22.08■■□□□ 1.13
USHBP1-202ENST00000324554 ABCA9Q8IUA7 1624 aa22.08■■□□□ 1.12
USHBP1-202ENST00000324554 RALGAPBQ86X10 1494 aa22.07■■□□□ 1.12
USHBP1-202ENST00000324554 FAM9BQ8IZU0 186 aa22.05■■□□□ 1.12
USHBP1-202ENST00000324554 DHX29Q7Z478 1369 aaKnown RBP22.05■■□□□ 1.12
USHBP1-202ENST00000324554 SCAPERQ9BY12 1400 aa22.04■■□□□ 1.12
USHBP1-202ENST00000324554 MAST1Q9Y2H9 1570 aa22.03■■□□□ 1.12
USHBP1-202ENST00000324554 ADGRL1O94910 1474 aa22.02■■□□□ 1.12
USHBP1-202ENST00000324554 ARID4BQ4LE39 1312 aaPredicted RBP22.02■■□□□ 1.12
USHBP1-202ENST00000324554 RIMBP3CA6NJZ7 1639 aa22.02■■□□□ 1.12
USHBP1-202ENST00000324554 RIMBP3BA6NNM3 1639 aa22.02■■□□□ 1.12
USHBP1-202ENST00000324554 RIMBP3Q9UFD9 1639 aa22.02■■□□□ 1.12
USHBP1-202ENST00000324554 CD109Q6YHK3 1445 aa22.02■■□□□ 1.11
USHBP1-202ENST00000324554 FAM135AQ9P2D6 1515 aa22.01■■□□□ 1.11
USHBP1-202ENST00000324554 ZBED9Q6R2W3 1325 aa22■■□□□ 1.11
USHBP1-202ENST00000324554 ARAP3Q8WWN8 1544 aa21.99■■□□□ 1.11
USHBP1-202ENST00000324554 CARD11Q9BXL7 1154 aa21.98■■□□□ 1.11
USHBP1-202ENST00000324554 PLXNC1O60486 1568 aa21.97■■□□□ 1.11
USHBP1-202ENST00000324554 POLR3GLQ9BT43 218 aa21.97■■□□□ 1.11
USHBP1-202ENST00000324554 DUOX2Q9NRD8 1548 aa21.95■■□□□ 1.1
USHBP1-202ENST00000324554 KDM2AQ9Y2K7 1162 aa21.95■■□□□ 1.1
USHBP1-202ENST00000324554 DCAF11Q8TEB1 546 aa21.94■■□□□ 1.1
USHBP1-202ENST00000324554 ROCK2O75116 1388 aaKnown RBP21.94■■□□□ 1.1
USHBP1-202ENST00000324554 ZFYVE16Q7Z3T8 1539 aa21.93■■□□□ 1.1
USHBP1-202ENST00000324554 UNC13BO14795 1591 aa21.92■■□□□ 1.1
USHBP1-202ENST00000324554 ERICH6BQ5W0A0 696 aa21.91■■□□□ 1.1
USHBP1-202ENST00000324554 RAPGEF3O95398 923 aa21.91■■□□□ 1.1
USHBP1-202ENST00000324554 KIF3BO15066 747 aa21.9■■□□□ 1.1
USHBP1-202ENST00000324554 CCDC144AA2RUR9 1427 aa21.89■■□□□ 1.1
USHBP1-202ENST00000324554 ERBINQ96RT1 1412 aa21.89■■□□□ 1.1
USHBP1-202ENST00000324554 ST20-MTHFSA0A0A6YYL1 179 aa21.89■■□□□ 1.1
USHBP1-202ENST00000324554 ATP7AQ04656 1500 aa21.89■■□□□ 1.09
USHBP1-202ENST00000324554 RTEL1-TNFRSF6BF6WH68 1400 aa21.88■■□□□ 1.09
USHBP1-202ENST00000324554 PPP4R2Q9NY27 417 aa21.88■■□□□ 1.09
USHBP1-202ENST00000324554 CNGB1Q14028 1251 aaPredicted RBP21.88■■□□□ 1.09
USHBP1-202ENST00000324554 RGL3Q3MIN7 710 aa21.88■■□□□ 1.09
USHBP1-202ENST00000324554 FAM69CQ0P6D2 419 aa21.87■■□□□ 1.09
USHBP1-202ENST00000324554 PLA2R1Q13018 1463 aa21.87■■□□□ 1.09
USHBP1-202ENST00000324554 PRAG1Q86YV5 1406 aa21.86■■□□□ 1.09
USHBP1-202ENST00000324554 MSH5O43196 834 aa21.85■■□□□ 1.09
USHBP1-202ENST00000324554 TRPM1Q7Z4N2 1603 aa21.85■■□□□ 1.09
USHBP1-202ENST00000324554 IQGAP3Q86VI3 1631 aa21.85■■□□□ 1.09
USHBP1-202ENST00000324554 INO80Q9ULG1 1556 aaPredicted RBP21.83■■□□□ 1.09
USHBP1-202ENST00000324554 E9PCH4 1651 aa21.82■■□□□ 1.08
USHBP1-202ENST00000324554 ZNF518AQ6AHZ1 1483 aa21.82■■□□□ 1.08
USHBP1-202ENST00000324554 A2MP01023 1474 aa21.8■■□□□ 1.08
USHBP1-202ENST00000324554 KIDINS220Q9ULH0 1771 aa21.8■■□□□ 1.08
USHBP1-202ENST00000324554 B4GALNT3Q6L9W6 998 aa21.8■■□□□ 1.08
USHBP1-202ENST00000324554 MAGI2Q86UL8 1455 aa21.8■■□□□ 1.08
USHBP1-202ENST00000324554 POGZQ7Z3K3 1410 aa21.79■■□□□ 1.08
USHBP1-202ENST00000324554 SMG6Q86US8 1419 aaKnown RBP21.79■■□□□ 1.08
USHBP1-202ENST00000324554 PNISRQ8TF01 805 aaKnown RBP21.78■■□□□ 1.08
USHBP1-202ENST00000324554 FANCIQ9NVI1 1328 aa21.78■■□□□ 1.08
USHBP1-202ENST00000324554 GPRASP1Q5JY77 1395 aa21.77■■□□□ 1.08
USHBP1-202ENST00000324554 KTN1Q86UP2 1357 aaKnown RBP21.76■■□□□ 1.07
USHBP1-202ENST00000324554 TMC1Q8TDI8 760 aa21.76■■□□□ 1.07
USHBP1-202ENST00000324554 ATP10AO60312 1499 aa21.76■■□□□ 1.07
USHBP1-202ENST00000324554 NBPF1Q3BBV0 1214 aa21.75■■□□□ 1.07
USHBP1-202ENST00000324554 GGT6Q6P531 493 aa21.75■■□□□ 1.07
USHBP1-202ENST00000324554 LAMC1P11047 1609 aa21.74■■□□□ 1.07
USHBP1-202ENST00000324554 TSPOAP1O95153 1857 aa21.73■■□□□ 1.07
USHBP1-202ENST00000324554 CFAP74Q9C0B2 1584 aa21.73■■□□□ 1.07
USHBP1-202ENST00000324554 MYBBP1AQ9BQG0 1328 aaKnown RBP21.73■■□□□ 1.07
USHBP1-202ENST00000324554 RALBP1Q15311 655 aa21.72■■□□□ 1.07
USHBP1-202ENST00000324554 BRD4O60885 1362 aaPredicted RBP21.72■■□□□ 1.07
USHBP1-202ENST00000324554 PRDM15P57071 1507 aaPredicted RBP21.72■■□□□ 1.07
USHBP1-202ENST00000324554 NUDCQ9Y266 331 aa21.72■■□□□ 1.07
USHBP1-202ENST00000324554 MAP3K4Q9Y6R4 1608 aa21.72■■□□□ 1.07
USHBP1-202ENST00000324554 LRPPRCP42704 1394 aaKnown RBP21.71■■□□□ 1.07
USHBP1-202ENST00000324554 NEO1Q92859 1461 aa21.71■■□□□ 1.07
USHBP1-202ENST00000324554 SENP3-EIF4A1A0A087X0R7 540 aa21.7■■□□□ 1.06
USHBP1-202ENST00000324554 EIF2AK4Q9P2K8 1649 aaKnown RBP21.7■■□□□ 1.06
USHBP1-202ENST00000324554 KANK1Q14678 1352 aa21.7■■□□□ 1.06
USHBP1-202ENST00000324554 COL17A1Q9UMD9 1497 aaPredicted RBP21.68■■□□□ 1.06
USHBP1-202ENST00000324554 DIP2BQ9P265 1576 aa21.68■■□□□ 1.06
USHBP1-202ENST00000324554 MLH3Q9UHC1 1453 aa21.67■■□□□ 1.06
USHBP1-202ENST00000324554 HECW2Q9P2P5 1572 aa21.67■■□□□ 1.06
USHBP1-202ENST00000324554 DEPDC5O75140 1603 aa21.67■■□□□ 1.06
USHBP1-202ENST00000324554 PARD3Q8TEW0 1356 aa21.66■■□□□ 1.06
USHBP1-202ENST00000324554 RNF123Q5XPI4 1314 aa21.65■■□□□ 1.06
USHBP1-202ENST00000324554 TESK2Q96S53 571 aa21.65■■□□□ 1.06
USHBP1-202ENST00000324554 ABCA6Q8N139 1617 aa21.65■■□□□ 1.06
USHBP1-202ENST00000324554 MROH1Q8NDA8 1641 aa21.65■■□□□ 1.06
USHBP1-202ENST00000324554 FRMPD1Q5SYB0 1578 aa21.64■■□□□ 1.06
USHBP1-202ENST00000324554 DISP3Q9P2K9 1392 aa21.64■■□□□ 1.06
USHBP1-202ENST00000324554 YEATS2Q9ULM3 1422 aa21.64■■□□□ 1.05
USHBP1-202ENST00000324554 PER1O15534 1290 aaPredicted RBP21.64■■□□□ 1.05
USHBP1-202ENST00000324554 GLI2P10070 1586 aa21.63■■□□□ 1.05
USHBP1-202ENST00000324554 RNF17Q9BXT8 1623 aaKnown RBP21.62■■□□□ 1.05
USHBP1-202ENST00000324554 NLRP13Q86W25 1043 aa21.61■■□□□ 1.05
USHBP1-202ENST00000324554 CFAP65Q6ZU64 1925 aaKnown RBP21.6■■□□□ 1.05
USHBP1-202ENST00000324554 VWDEQ8N2E2 1590 aa21.6■■□□□ 1.05
USHBP1-202ENST00000324554 RICTORQ6R327 1708 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms