RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 TIMELESSQ9UNS1 1208 aa11.88□□□□□ -0.51
CNOT4-201ENST00000315544 XIRP1Q702N8 1843 aaKnown RBP11.88□□□□□ -0.51
CNOT4-201ENST00000315544 NCOA1Q15788 1441 aa11.88□□□□□ -0.51
CNOT4-201ENST00000315544 ATP10AO60312 1499 aa11.87□□□□□ -0.51
CNOT4-201ENST00000315544 ADGRL1O94910 1474 aa11.87□□□□□ -0.51
CNOT4-201ENST00000315544 C9orf84Q5VXU9 1444 aa11.87□□□□□ -0.51
CNOT4-201ENST00000315544 CYB5RLQ6IPT4 315 aa11.87□□□□□ -0.51
CNOT4-201ENST00000315544 KIAA1210Q9ULL0 1709 aa11.87□□□□□ -0.51
CNOT4-201ENST00000315544 UGGT1Q9NYU2 1555 aa11.87□□□□□ -0.51
CNOT4-201ENST00000315544 ANKRD30BQ9BXX2 1392 aa11.86□□□□□ -0.51
CNOT4-201ENST00000315544 UBTFP17480 764 aaKnown RBP11.85□□□□□ -0.51
CNOT4-201ENST00000315544 LMTK3Q96Q04 1460 aa11.84□□□□□ -0.51
CNOT4-201ENST00000315544 EFCAB6Q5THR3 1501 aa11.83□□□□□ -0.52
CNOT4-201ENST00000315544 CCER1Q8TC90 406 aaPredicted RBP11.82□□□□□ -0.52
CNOT4-201ENST00000315544 DUOX2Q9NRD8 1548 aa11.81□□□□□ -0.52
CNOT4-201ENST00000315544 PLA2R1Q13018 1463 aa11.81□□□□□ -0.52
CNOT4-201ENST00000315544 ARHGAP5Q13017 1502 aa11.8□□□□□ -0.52
CNOT4-201ENST00000315544 CCDC141Q6ZP82 1450 aa11.8□□□□□ -0.52
CNOT4-201ENST00000315544 NWD1Q149M9 1564 aa11.8□□□□□ -0.52
CNOT4-201ENST00000315544 SYNMO15061 1565 aa11.8□□□□□ -0.52
CNOT4-201ENST00000315544 DHX29Q7Z478 1369 aaKnown RBP11.79□□□□□ -0.52
CNOT4-201ENST00000315544 FBLN2P98095 1184 aa11.79□□□□□ -0.52
CNOT4-201ENST00000315544 TRAPPC8Q9Y2L5 1435 aa11.79□□□□□ -0.52
CNOT4-201ENST00000315544 STRCP1A6NGW2 1772 aa11.79□□□□□ -0.52
CNOT4-201ENST00000315544 NPATQ14207 1427 aa11.79□□□□□ -0.52
CNOT4-201ENST00000315544 ARHGAP31Q2M1Z3 1444 aa11.79□□□□□ -0.52
CNOT4-201ENST00000315544 ABCC3O15438 1527 aa11.78□□□□□ -0.52
CNOT4-201ENST00000315544 PRAG1Q86YV5 1406 aa11.78□□□□□ -0.52
CNOT4-201ENST00000315544 ERBINQ96RT1 1412 aa11.78□□□□□ -0.52
CNOT4-201ENST00000315544 MYO5BQ9ULV0 1848 aa11.77□□□□□ -0.52
CNOT4-201ENST00000315544 EHMT2Q96KQ7 1210 aa11.77□□□□□ -0.53
CNOT4-201ENST00000315544 NRXN3Q9Y4C0 1643 aa11.76□□□□□ -0.53
CNOT4-201ENST00000315544 YEATS2Q9ULM3 1422 aa11.76□□□□□ -0.53
CNOT4-201ENST00000315544 VIRMAQ69YN4 1812 aaKnown RBP11.75□□□□□ -0.53
CNOT4-201ENST00000315544 KNDC1Q76NI1 1749 aa11.75□□□□□ -0.53
CNOT4-201ENST00000315544 ALKQ9UM73 1620 aa11.74□□□□□ -0.53
CNOT4-201ENST00000315544 TMEM131LA2VDJ0 1609 aa11.74□□□□□ -0.53
CNOT4-201ENST00000315544 PTPRMP28827 1452 aa11.74□□□□□ -0.53
CNOT4-201ENST00000315544 RALGAPBQ86X10 1494 aa11.74□□□□□ -0.53
CNOT4-201ENST00000315544 SLIT1O75093 1534 aa11.73□□□□□ -0.53
CNOT4-201ENST00000315544 IQSEC2Q5JU85 1478 aa11.73□□□□□ -0.53
CNOT4-201ENST00000315544 KCNH8Q96L42 1107 aa11.73□□□□□ -0.53
CNOT4-201ENST00000315544 PPLO60437 1756 aa11.72□□□□□ -0.53
CNOT4-201ENST00000315544 MED14O60244 1454 aa11.71□□□□□ -0.53
CNOT4-201ENST00000315544 SHPRHQ149N8 1683 aa11.71□□□□□ -0.54
CNOT4-201ENST00000315544 ARHGAP23Q9P227 1491 aa11.7□□□□□ -0.54
CNOT4-201ENST00000315544 LTBP4Q8N2S1 1624 aa11.69□□□□□ -0.54
CNOT4-201ENST00000315544 CEP170BQ9Y4F5 1589 aaPredicted RBP11.69□□□□□ -0.54
CNOT4-201ENST00000315544 NRXN1Q9ULB1 1477 aa11.68□□□□□ -0.54
CNOT4-201ENST00000315544 GTF3C3Q9Y5Q9 886 aa11.68□□□□□ -0.54
CNOT4-201ENST00000315544 SETD1BQ9UPS6 1966 aaKnown RBP11.68□□□□□ -0.54
CNOT4-201ENST00000315544 A2MP01023 1474 aa11.67□□□□□ -0.54
CNOT4-201ENST00000315544 RNF123Q5XPI4 1314 aa11.67□□□□□ -0.54
CNOT4-201ENST00000315544 XRN1Q8IZH2 1706 aaKnown RBP11.67□□□□□ -0.54
CNOT4-201ENST00000315544 CHD2O14647 1828 aaKnown RBP11.67□□□□□ -0.54
CNOT4-201ENST00000315544 CNTLNQ9NXG0 1405 aa11.66□□□□□ -0.54
CNOT4-201ENST00000315544 KDM4FA0A1W2PPD8 638 aa11.66□□□□□ -0.54
CNOT4-201ENST00000315544 HNRNPUL2Q1KMD3 747 aaKnown RBP11.66□□□□□ -0.54
CNOT4-201ENST00000315544 USP32Q8NFA0 1604 aa11.65□□□□□ -0.54
CNOT4-201ENST00000315544 GPRASP1Q5JY77 1395 aa11.65□□□□□ -0.54
CNOT4-201ENST00000315544 SCAPERQ9BY12 1400 aa11.65□□□□□ -0.54
CNOT4-201ENST00000315544 C11orf95C9JLR9 678 aaPredicted RBP11.65□□□□□ -0.54
CNOT4-201ENST00000315544 DIP2AQ14689 1571 aa11.64□□□□□ -0.55
CNOT4-201ENST00000315544 FAM69CQ0P6D2 419 aa11.64□□□□□ -0.55
CNOT4-201ENST00000315544 CLTCL1P53675 1640 aa11.64□□□□□ -0.55
CNOT4-201ENST00000315544 WASHC2AQ641Q2 1341 aa11.64□□□□□ -0.55
CNOT4-201ENST00000315544 ADGRB3O60242 1522 aa11.63□□□□□ -0.55
CNOT4-201ENST00000315544 TRPM2O94759 1503 aa11.62□□□□□ -0.55
CNOT4-201ENST00000315544 NOS1P29475 1434 aa11.62□□□□□ -0.55
CNOT4-201ENST00000315544 AEBP2Q6ZN18 517 aaPredicted RBP11.62□□□□□ -0.55
CNOT4-201ENST00000315544 SUPT16HQ9Y5B9 1047 aaKnown RBP11.62□□□□□ -0.55
CNOT4-201ENST00000315544 SIN3AQ96ST3 1273 aa11.61□□□□□ -0.55
CNOT4-201ENST00000315544 PTPRTO14522 1441 aa11.6□□□□□ -0.55
CNOT4-201ENST00000315544 SETBP1Q9Y6X0 1596 aa11.6□□□□□ -0.55
CNOT4-201ENST00000315544 LRPPRCP42704 1394 aaKnown RBP11.6□□□□□ -0.55
CNOT4-201ENST00000315544 CCER2I3L3R5 266 aa11.59□□□□□ -0.55
CNOT4-201ENST00000315544 USP54Q70EL1 1684 aa11.57□□□□□ -0.56
CNOT4-201ENST00000315544 ERVK-7P63135 1459 aa11.57□□□□□ -0.56
CNOT4-201ENST00000315544 INSRP06213 1382 aa11.57□□□□□ -0.56
CNOT4-201ENST00000315544 KIF1BO60333 1816 aa11.56□□□□□ -0.56
CNOT4-201ENST00000315544 PELP1Q8IZL8 1130 aaKnown RBP11.56□□□□□ -0.56
CNOT4-201ENST00000315544 NBPF8Q3BBV2 869 aa11.55□□□□□ -0.56
CNOT4-201ENST00000315544 PPP6R1Q9UPN7 881 aa11.55□□□□□ -0.56
CNOT4-201ENST00000315544 ANKRD26Q9UPS8 1709 aa11.55□□□□□ -0.56
CNOT4-201ENST00000315544 NLRP1Q9C000 1473 aa11.55□□□□□ -0.56
CNOT4-201ENST00000315544 CRYBG1Q9Y4K1 1723 aa11.55□□□□□ -0.56
CNOT4-201ENST00000315544 A2ML1A8K2U0 1454 aa11.55□□□□□ -0.56
CNOT4-201ENST00000315544 NEXMIFQ5QGS0 1516 aa11.52□□□□□ -0.57
CNOT4-201ENST00000315544 CCDC7Q96M83 1385 aa11.52□□□□□ -0.57
CNOT4-201ENST00000315544 ARHGEF28Q8N1W1 1705 aaKnown RBP11.51□□□□□ -0.57
CNOT4-201ENST00000315544 ZFYVE9O95405 1425 aa11.5□□□□□ -0.57
CNOT4-201ENST00000315544 RSPH4AQ5TD94 716 aa11.5□□□□□ -0.57
CNOT4-201ENST00000315544 ADGRB1O14514 1584 aa11.5□□□□□ -0.57
CNOT4-201ENST00000315544 PLEKHD1A6NEE1 506 aa11.48□□□□□ -0.57
CNOT4-201ENST00000315544 NPM1P06748 294 aaKnown RBP eCLIP11.48□□□□□ -0.57
CNOT4-201ENST00000315544 TSHZ2Q9NRE2 1034 aa11.48□□□□□ -0.57
CNOT4-201ENST00000315544 TOPAZ1Q8N9V7 1692 aa11.48□□□□□ -0.57
CNOT4-201ENST00000315544 ZNF644Q9H582 1327 aaPredicted RBP11.48□□□□□ -0.57
CNOT4-201ENST00000315544 ADGRB2O60241 1585 aa11.47□□□□□ -0.57
CNOT4-201ENST00000315544 MTUS2Q5JR59 1369 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms