RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 SALL2Q9Y467 1007 aaPredicted RBP14.83□□□□□ -0.04
LSM3-201ENST00000306024 MYO5CQ9NQX4 1742 aa14.82□□□□□ -0.04
LSM3-201ENST00000306024 DENND4BO75064 1496 aaPredicted RBP14.82□□□□□ -0.04
LSM3-201ENST00000306024 DNMT1P26358 1616 aaKnown RBP14.82□□□□□ -0.04
LSM3-201ENST00000306024 DNAJC5Q9H3Z4 198 aa14.8□□□□□ -0.04
LSM3-201ENST00000306024 CDC42BPAQ5VT25 1732 aa14.8□□□□□ -0.04
LSM3-201ENST00000306024 TIMELESSQ9UNS1 1208 aa14.79□□□□□ -0.04
LSM3-201ENST00000306024 ERICH6BQ5W0A0 696 aa14.79□□□□□ -0.04
LSM3-201ENST00000306024 HIRIP3Q9BW71 556 aaPredicted RBP14.78□□□□□ -0.04
LSM3-201ENST00000306024 PREX2Q70Z35 1606 aa14.78□□□□□ -0.04
LSM3-201ENST00000306024 MBD5Q9P267 1494 aa14.78□□□□□ -0.04
LSM3-201ENST00000306024 ZBTB47Q9UFB7 747 aaPredicted RBP14.78□□□□□ -0.04
LSM3-201ENST00000306024 SAMD9LQ8IVG5 1584 aa14.78□□□□□ -0.04
LSM3-201ENST00000306024 DCAF11Q8TEB1 546 aa14.77□□□□□ -0.05
LSM3-201ENST00000306024 L3MBTL2Q969R5 705 aa14.77□□□□□ -0.05
LSM3-201ENST00000306024 ZNF518AQ6AHZ1 1483 aa14.76□□□□□ -0.05
LSM3-201ENST00000306024 SENP3Q9H4L4 574 aaPredicted RBP14.76□□□□□ -0.05
LSM3-201ENST00000306024 TEX14Q8IWB6 1497 aa14.76□□□□□ -0.05
LSM3-201ENST00000306024 SHANK2Q9UPX8 1470 aa14.76□□□□□ -0.05
LSM3-201ENST00000306024 PPP1R15AO75807 674 aaPredicted RBP14.74□□□□□ -0.05
LSM3-201ENST00000306024 NPM2Q86SE8 214 aaKnown RBP14.72□□□□□ -0.05
LSM3-201ENST00000306024 CCDC144AA2RUR9 1427 aa14.72□□□□□ -0.05
LSM3-201ENST00000306024 CDC42BPBQ9Y5S2 1711 aa14.72□□□□□ -0.05
LSM3-201ENST00000306024 ARHGEF12Q9NZN5 1544 aa14.72□□□□□ -0.05
LSM3-201ENST00000306024 DHX29Q7Z478 1369 aaKnown RBP14.72□□□□□ -0.05
LSM3-201ENST00000306024 ADGRL2O95490 1459 aa14.72□□□□□ -0.05
LSM3-201ENST00000306024 NEO1Q92859 1461 aa14.71□□□□□ -0.05
LSM3-201ENST00000306024 ARHGEF5Q12774 1597 aa14.71□□□□□ -0.05
LSM3-201ENST00000306024 TSPOAP1O95153 1857 aa14.7□□□□□ -0.06
LSM3-201ENST00000306024 ABCC1P33527 1531 aa14.7□□□□□ -0.06
LSM3-201ENST00000306024 CNGB1Q14028 1251 aaPredicted RBP14.7□□□□□ -0.06
LSM3-201ENST00000306024 B4GALNT3Q6L9W6 998 aa14.7□□□□□ -0.06
LSM3-201ENST00000306024 PPP4R2Q9NY27 417 aa14.7□□□□□ -0.06
LSM3-201ENST00000306024 ABCA9Q8IUA7 1624 aa14.7□□□□□ -0.06
LSM3-201ENST00000306024 MAPKBP1O60336 1514 aa14.7□□□□□ -0.06
LSM3-201ENST00000306024 RTEL1-TNFRSF6BF6WH68 1400 aa14.69□□□□□ -0.06
LSM3-201ENST00000306024 DUOX2Q9NRD8 1548 aa14.68□□□□□ -0.06
LSM3-201ENST00000306024 EIF4G2P78344 907 aaKnown RBP eCLIP14.68□□□□□ -0.06
LSM3-201ENST00000306024 POGZQ7Z3K3 1410 aa14.68□□□□□ -0.06
LSM3-201ENST00000306024 A2MP01023 1474 aa14.67□□□□□ -0.06
LSM3-201ENST00000306024 ARAP3Q8WWN8 1544 aa14.67□□□□□ -0.06
LSM3-201ENST00000306024 ATP7AQ04656 1500 aa14.66□□□□□ -0.06
LSM3-201ENST00000306024 IL27Q8NEV9 243 aa14.66□□□□□ -0.06
LSM3-201ENST00000306024 CARD11Q9BXL7 1154 aa14.66□□□□□ -0.06
LSM3-201ENST00000306024 ERBINQ96RT1 1412 aa14.65□□□□□ -0.06
LSM3-201ENST00000306024 DAXXQ9UER7 740 aaPredicted RBP14.65□□□□□ -0.06
LSM3-201ENST00000306024 ANKRD30BQ9BXX2 1392 aa14.64□□□□□ -0.07
LSM3-201ENST00000306024 CCER2I3L3R5 266 aa14.63□□□□□ -0.07
LSM3-201ENST00000306024 CFAP74Q9C0B2 1584 aa14.63□□□□□ -0.07
LSM3-201ENST00000306024 KDM6BO15054 1643 aa14.63□□□□□ -0.07
LSM3-201ENST00000306024 ADGBQ8N7X0 1667 aa14.63□□□□□ -0.07
LSM3-201ENST00000306024 GCC2Q8IWJ2 1684 aa14.62□□□□□ -0.07
LSM3-201ENST00000306024 NUTM2DQ5VT03 806 aaPredicted RBP14.6□□□□□ -0.07
LSM3-201ENST00000306024 LAS1LQ9Y4W2 734 aaKnown RBP14.6□□□□□ -0.07
LSM3-201ENST00000306024 NEFMP07197 916 aa14.59□□□□□ -0.07
LSM3-201ENST00000306024 YEATS2Q9ULM3 1422 aa14.59□□□□□ -0.07
LSM3-201ENST00000306024 PZPP20742 1482 aa14.59□□□□□ -0.07
LSM3-201ENST00000306024 PAK3O75914 559 aaPredicted RBP14.58□□□□□ -0.08
LSM3-201ENST00000306024 FAM9BQ8IZU0 186 aa14.58□□□□□ -0.08
LSM3-201ENST00000306024 FAM135AQ9P2D6 1515 aa14.58□□□□□ -0.08
LSM3-201ENST00000306024 HSPA5P11021 654 aaKnown RBP14.56□□□□□ -0.08
LSM3-201ENST00000306024 MLH3Q9UHC1 1453 aa14.56□□□□□ -0.08
LSM3-201ENST00000306024 DIP2BQ9P265 1576 aa14.56□□□□□ -0.08
LSM3-201ENST00000306024 ZFYVE16Q7Z3T8 1539 aa14.56□□□□□ -0.08
LSM3-201ENST00000306024 GLIPR1L2Q4G1C9 344 aa14.55□□□□□ -0.08
LSM3-201ENST00000306024 ROCK2O75116 1388 aaKnown RBP14.54□□□□□ -0.08
LSM3-201ENST00000306024 CROCC2H7BZ55 1655 aa14.54□□□□□ -0.08
LSM3-201ENST00000306024 ATP10AO60312 1499 aa14.53□□□□□ -0.08
LSM3-201ENST00000306024 IPO9Q96P70 1041 aaKnown RBP14.53□□□□□ -0.08
LSM3-201ENST00000306024 FBXO31Q5XUX0 539 aaPredicted RBP14.53□□□□□ -0.08
LSM3-201ENST00000306024 NBPF8Q3BBV2 869 aa14.53□□□□□ -0.08
LSM3-201ENST00000306024 UBE2Q2Q8WVN8 375 aa14.53□□□□□ -0.08
LSM3-201ENST00000306024 MAST1Q9Y2H9 1570 aa14.53□□□□□ -0.08
LSM3-201ENST00000306024 GLI2P10070 1586 aa14.52□□□□□ -0.08
LSM3-201ENST00000306024 RPRD2Q5VT52 1461 aaKnown RBP14.52□□□□□ -0.09
LSM3-201ENST00000306024 HECW2Q9P2P5 1572 aa14.52□□□□□ -0.09
LSM3-201ENST00000306024 HDGFP51858 240 aaKnown RBP14.5□□□□□ -0.09
LSM3-201ENST00000306024 PLXNC1O60486 1568 aa14.5□□□□□ -0.09
LSM3-201ENST00000306024 SLC52A1Q9NWF4 448 aa14.5□□□□□ -0.09
LSM3-201ENST00000306024 PPP6R1Q9UPN7 881 aa14.49□□□□□ -0.09
LSM3-201ENST00000306024 VGFO15240 615 aaPredicted RBP14.48□□□□□ -0.09
LSM3-201ENST00000306024 CEBPAP49715 358 aaPredicted RBP14.48□□□□□ -0.09
LSM3-201ENST00000306024 IDI1Q13907 227 aa14.47□□□□□ -0.09
LSM3-201ENST00000306024 STK26Q9P289 416 aa14.47□□□□□ -0.09
LSM3-201ENST00000306024 MAGI2Q86UL8 1455 aa14.47□□□□□ -0.09
LSM3-201ENST00000306024 CFAP65Q6ZU64 1925 aaKnown RBP14.46□□□□□ -0.09
LSM3-201ENST00000306024 MRS2Q9HD23 443 aa14.45□□□□□ -0.1
LSM3-201ENST00000306024 PPM1GO15355 546 aaPredicted RBP14.45□□□□□ -0.1
LSM3-201ENST00000306024 MAP3K4Q9Y6R4 1608 aa14.44□□□□□ -0.1
LSM3-201ENST00000306024 ST20-MTHFSA0A0A6YYL1 179 aa14.44□□□□□ -0.1
LSM3-201ENST00000306024 SAFB2Q14151 953 aaKnown RBP eCLIP14.44□□□□□ -0.1
LSM3-201ENST00000306024 NBPF1Q3BBV0 1214 aa14.44□□□□□ -0.1
LSM3-201ENST00000306024 STAC3Q96MF2 364 aa14.44□□□□□ -0.1
LSM3-201ENST00000306024 POGKQ9P215 609 aa14.43□□□□□ -0.1
LSM3-201ENST00000306024 CFAP70Q5T0N1 1121 aa14.43□□□□□ -0.1
LSM3-201ENST00000306024 USP47Q96K76 1375 aa14.43□□□□□ -0.1
LSM3-201ENST00000306024 EID1Q9Y6B2 187 aa14.43□□□□□ -0.1
LSM3-201ENST00000306024 INO80Q9ULG1 1556 aaPredicted RBP14.43□□□□□ -0.1
LSM3-201ENST00000306024 TRAK1Q9UPV9 953 aa14.42□□□□□ -0.1
LSM3-201ENST00000306024 COL17A1Q9UMD9 1497 aaPredicted RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms