RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 UGGT2Q9NYU1 1516 aa17.62■□□□□ 0.41
SKA3-201ENST00000298260 CC2D1BQ5T0F9 858 aaKnown RBP17.62■□□□□ 0.41
SKA3-201ENST00000298260 ZMYND15Q9H091 742 aa17.62■□□□□ 0.41
SKA3-201ENST00000298260 MIA2Q96PC5 1412 aa17.61■□□□□ 0.41
SKA3-201ENST00000298260 KIAA0586Q9BVV6 1533 aa17.61■□□□□ 0.41
SKA3-201ENST00000298260 BRD4O60885 1362 aaPredicted RBP17.6■□□□□ 0.41
SKA3-201ENST00000298260 KDM2BQ8NHM5 1336 aa17.6■□□□□ 0.41
SKA3-201ENST00000298260 NAP1L5Q96NT1 182 aaPredicted RBP17.6■□□□□ 0.41
SKA3-201ENST00000298260 SAMD9Q5K651 1589 aa17.58■□□□□ 0.41
SKA3-201ENST00000298260 ARID4BQ4LE39 1312 aaPredicted RBP17.58■□□□□ 0.4
SKA3-201ENST00000298260 DISP1Q96F81 1524 aa17.57■□□□□ 0.4
SKA3-201ENST00000298260 SEC24BO95487 1268 aa17.57■□□□□ 0.4
SKA3-201ENST00000298260 CDK13Q14004 1512 aaKnown RBP17.57■□□□□ 0.4
SKA3-201ENST00000298260 GZF1Q9H116 711 aaPredicted RBP17.57■□□□□ 0.4
SKA3-201ENST00000298260 EHBP1L1Q8N3D4 1523 aa17.56■□□□□ 0.4
SKA3-201ENST00000298260 PKD2Q13563 968 aa17.56■□□□□ 0.4
SKA3-201ENST00000298260 PANK2Q9BZ23 570 aa17.56■□□□□ 0.4
SKA3-201ENST00000298260 KTN1Q86UP2 1357 aaKnown RBP17.56■□□□□ 0.4
SKA3-201ENST00000298260 RALBP1Q15311 655 aa17.55■□□□□ 0.4
SKA3-201ENST00000298260 SPRYD3Q8NCJ5 442 aa17.55■□□□□ 0.4
SKA3-201ENST00000298260 CHD1O14646 1710 aa17.55■□□□□ 0.4
SKA3-201ENST00000298260 NLRP13Q86W25 1043 aa17.55■□□□□ 0.4
SKA3-201ENST00000298260 PDE3BQ13370 1112 aa17.54■□□□□ 0.4
SKA3-201ENST00000298260 PLB1Q6P1J6 1458 aa17.54■□□□□ 0.4
SKA3-201ENST00000298260 TCOF1Q13428 1488 aaKnown RBP17.53■□□□□ 0.4
SKA3-201ENST00000298260 CENPQQ7L2Z9 268 aaPredicted RBP17.53■□□□□ 0.4
SKA3-201ENST00000298260 KDM5CP41229 1560 aa17.52■□□□□ 0.4
SKA3-201ENST00000298260 NUP160Q12769 1436 aa17.51■□□□□ 0.39
SKA3-201ENST00000298260 ARHGEF11O15085 1522 aa17.51■□□□□ 0.39
SKA3-201ENST00000298260 PRG4Q92954 1404 aaPredicted RBP17.51■□□□□ 0.39
SKA3-201ENST00000298260 USP19O94966 1318 aa17.5■□□□□ 0.39
SKA3-201ENST00000298260 KIAA0556O60303 1618 aa17.49■□□□□ 0.39
SKA3-201ENST00000298260 XRCC6P12956 609 aaKnown RBP eCLIP17.48■□□□□ 0.39
SKA3-201ENST00000298260 DAPK1P53355 1430 aa17.48■□□□□ 0.39
SKA3-201ENST00000298260 ROCK2O75116 1388 aaKnown RBP17.48■□□□□ 0.39
SKA3-201ENST00000298260 HSP90AA2PQ14568 343 aaPredicted RBP17.48■□□□□ 0.39
SKA3-201ENST00000298260 ERCC6L2Q5T890 1561 aa17.48■□□□□ 0.39
SKA3-201ENST00000298260 MBD5Q9P267 1494 aa17.47■□□□□ 0.39
SKA3-201ENST00000298260 ADAMTS8Q9UP79 889 aa17.47■□□□□ 0.39
SKA3-201ENST00000298260 PZPP20742 1482 aa17.47■□□□□ 0.39
SKA3-201ENST00000298260 ABCC5O15440 1437 aa17.47■□□□□ 0.39
SKA3-201ENST00000298260 PNNQ9H307 717 aaKnown RBP17.47■□□□□ 0.39
SKA3-201ENST00000298260 ZNF777Q9ULD5 760 aaPredicted RBP17.47■□□□□ 0.39
SKA3-201ENST00000298260 GLIPR1L2Q4G1C9 344 aa17.46■□□□□ 0.39
SKA3-201ENST00000298260 IGHDP01880 384 aa17.45■□□□□ 0.38
SKA3-201ENST00000298260 PARD3Q8TEW0 1356 aa17.43■□□□□ 0.38
SKA3-201ENST00000298260 EPRSP07814 1512 aaKnown RBP17.43■□□□□ 0.38
SKA3-201ENST00000298260 PER1O15534 1290 aaPredicted RBP17.43■□□□□ 0.38
SKA3-201ENST00000298260 CARMIL2Q6F5E8 1435 aa17.42■□□□□ 0.38
SKA3-201ENST00000298260 BCAR3O75815 825 aa17.42■□□□□ 0.38
SKA3-201ENST00000298260 DUSP27Q5VZP5 1158 aa17.42■□□□□ 0.38
SKA3-201ENST00000298260 PLEKHH1Q9ULM0 1364 aa17.42■□□□□ 0.38
SKA3-201ENST00000298260 HSP90AA1P07900 732 aaKnown RBP17.42■□□□□ 0.38
SKA3-201ENST00000298260 NBPF1Q3BBV0 1214 aa17.41■□□□□ 0.38
SKA3-201ENST00000298260 NUP153P49790 1475 aaKnown RBP17.41■□□□□ 0.38
SKA3-201ENST00000298260 KIF14Q15058 1648 aa17.4■□□□□ 0.38
SKA3-201ENST00000298260 PANK3Q9H999 370 aa17.39■□□□□ 0.38
SKA3-201ENST00000298260 SPINK5Q9NQ38 1064 aaPredicted RBP17.39■□□□□ 0.38
SKA3-201ENST00000298260 RGL3Q3MIN7 710 aa17.39■□□□□ 0.37
SKA3-201ENST00000298260 L1TD1Q5T7N2 865 aaKnown RBP17.39■□□□□ 0.37
SKA3-201ENST00000298260 CCDC146Q8IYE0 955 aa17.39■□□□□ 0.37
SKA3-201ENST00000298260 PTPRGP23470 1445 aa17.38■□□□□ 0.37
SKA3-201ENST00000298260 KIAA1107Q9UPP5 1409 aa17.38■□□□□ 0.37
SKA3-201ENST00000298260 GOLGA6L3A6NEY3 463 aa17.38■□□□□ 0.37
SKA3-201ENST00000298260 ANTXR1Q9H6X2 564 aa17.37■□□□□ 0.37
SKA3-201ENST00000298260 ROCK1Q13464 1354 aa17.36■□□□□ 0.37
SKA3-201ENST00000298260 ERBB4Q15303 1308 aa17.35■□□□□ 0.37
SKA3-201ENST00000298260 RALGAPBQ86X10 1494 aa17.35■□□□□ 0.37
SKA3-201ENST00000298260 BLMP54132 1417 aaPredicted RBP17.34■□□□□ 0.37
SKA3-201ENST00000298260 CLCN1P35523 988 aa17.34■□□□□ 0.37
SKA3-201ENST00000298260 TBC1D2Q9BYX2 928 aa17.34■□□□□ 0.37
SKA3-201ENST00000298260 BECN1Q14457 450 aa17.33■□□□□ 0.36
SKA3-201ENST00000298260 RAPGEF6Q8TEU7 1601 aa17.33■□□□□ 0.36
SKA3-201ENST00000298260 GOLGA2Q08379 1002 aa17.32■□□□□ 0.36
SKA3-201ENST00000298260 PANK1Q8TE04 598 aa17.32■□□□□ 0.36
SKA3-201ENST00000298260 DISP3Q9P2K9 1392 aa17.32■□□□□ 0.36
SKA3-201ENST00000298260 COG6Q9Y2V7 657 aa17.31■□□□□ 0.36
SKA3-201ENST00000298260 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
SKA3-201ENST00000298260 NUP155O75694 1391 aa17.31■□□□□ 0.36
SKA3-201ENST00000298260 ZMYM4Q5VZL5 1548 aa17.31■□□□□ 0.36
SKA3-201ENST00000298260 RRP9O43818 475 aaKnown RBP17.31■□□□□ 0.36
SKA3-201ENST00000298260 FSD2A1L4K1 749 aa17.29■□□□□ 0.36
SKA3-201ENST00000298260 E9PCH4 1651 aa17.29■□□□□ 0.36
SKA3-201ENST00000298260 WDR43Q15061 677 aaKnown RBP eCLIP17.29■□□□□ 0.36
SKA3-201ENST00000298260 CFDP1Q9UEE9 299 aaPredicted RBP17.29■□□□□ 0.36
SKA3-201ENST00000298260 DNMT1P26358 1616 aaKnown RBP17.29■□□□□ 0.36
SKA3-201ENST00000298260 PLEKHD1A6NEE1 506 aa17.29■□□□□ 0.36
SKA3-201ENST00000298260 OSCARQ8IYS5 282 aa17.29■□□□□ 0.36
SKA3-201ENST00000298260 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.29■□□□□ 0.36
SKA3-201ENST00000298260 MCM4P33991 863 aa17.28■□□□□ 0.36
SKA3-201ENST00000298260 UHRF1BP1Q6BDS2 1440 aa17.28■□□□□ 0.36
SKA3-201ENST00000298260 PLEKHG5O94827 1062 aa17.27■□□□□ 0.36
SKA3-201ENST00000298260 ATP10BO94823 1461 aa17.26■□□□□ 0.35
SKA3-201ENST00000298260 TRAK2O60296 914 aa17.26■□□□□ 0.35
SKA3-201ENST00000298260 SLFN5Q08AF3 891 aa17.26■□□□□ 0.35
SKA3-201ENST00000298260 TNNQ9UQP3 1299 aa17.26■□□□□ 0.35
SKA3-201ENST00000298260 APAF1O14727 1248 aa17.25■□□□□ 0.35
SKA3-201ENST00000298260 NLRP1Q9C000 1473 aa17.25■□□□□ 0.35
SKA3-201ENST00000298260 ESPNB1AK53 854 aa17.25■□□□□ 0.35
SKA3-201ENST00000298260 ZNF521Q96K83 1311 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms