RNA–Protein interactions for RNA: ENST00000295911.6

CLRN1-201, Transcript of clarin 1, humanhuman

TSL 1 (best) BASIC

Gene CLRN1, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-201ENST00000295911 C9orf84Q5VXU9 1444 aa13.15□□□□□ -0.3
CLRN1-201ENST00000295911 SAMD9LQ8IVG5 1584 aa13.15□□□□□ -0.3
CLRN1-201ENST00000295911 ANKRD30BQ9BXX2 1392 aa13.14□□□□□ -0.31
CLRN1-201ENST00000295911 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLRN1-201ENST00000295911 KDM5BQ9UGL1 1544 aa13.14□□□□□ -0.31
CLRN1-201ENST00000295911 PLEKHH2Q8IVE3 1493 aa13.13□□□□□ -0.31
CLRN1-201ENST00000295911 ANKRD50Q9ULJ7 1429 aa13.13□□□□□ -0.31
CLRN1-201ENST00000295911 FARP1Q9Y4F1 1045 aaPredicted RBP13.13□□□□□ -0.31
CLRN1-201ENST00000295911 RPRD2Q5VT52 1461 aaKnown RBP13.12□□□□□ -0.31
CLRN1-201ENST00000295911 CCDC141Q6ZP82 1450 aa13.12□□□□□ -0.31
CLRN1-201ENST00000295911 TTC37Q6PGP7 1564 aa13.12□□□□□ -0.31
CLRN1-201ENST00000295911 MAST1Q9Y2H9 1570 aa13.12□□□□□ -0.31
CLRN1-201ENST00000295911 PZPP20742 1482 aa13.12□□□□□ -0.31
CLRN1-201ENST00000295911 MBD5Q9P267 1494 aa13.12□□□□□ -0.31
CLRN1-201ENST00000295911 ARHGAP5Q13017 1502 aa13.11□□□□□ -0.31
CLRN1-201ENST00000295911 CREBZFQ9NS37 354 aa13.1□□□□□ -0.31
CLRN1-201ENST00000295911 KDM5DQ9BY66 1539 aa13.1□□□□□ -0.31
CLRN1-201ENST00000295911 KIAA1107Q9UPP5 1409 aa13.09□□□□□ -0.31
CLRN1-201ENST00000295911 HNRNPMP52272 730 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLRN1-201ENST00000295911 PROM2Q8N271 834 aa13.07□□□□□ -0.32
CLRN1-201ENST00000295911 KIF15Q9NS87 1388 aa13.07□□□□□ -0.32
CLRN1-201ENST00000295911 SYCP2Q9BX26 1530 aa13.06□□□□□ -0.32
CLRN1-201ENST00000295911 PLXNC1O60486 1568 aa13.06□□□□□ -0.32
CLRN1-201ENST00000295911 PLCH2O75038 1416 aa13.06□□□□□ -0.32
CLRN1-201ENST00000295911 L3MBTL2Q969R5 705 aa13.05□□□□□ -0.32
CLRN1-201ENST00000295911 ARAP3Q8WWN8 1544 aa13.05□□□□□ -0.32
CLRN1-201ENST00000295911 DDX10Q13206 875 aaKnown RBP13.05□□□□□ -0.32
CLRN1-201ENST00000295911 YTHDC1Q96MU7 727 aaKnown RBP13.05□□□□□ -0.32
CLRN1-201ENST00000295911 TEX14Q8IWB6 1497 aa13.04□□□□□ -0.32
CLRN1-201ENST00000295911 NUP155O75694 1391 aa13.03□□□□□ -0.32
CLRN1-201ENST00000295911 POLR1AO95602 1720 aaPredicted RBP13.03□□□□□ -0.32
CLRN1-201ENST00000295911 PKD2Q13563 968 aa13.03□□□□□ -0.32
CLRN1-201ENST00000295911 EFCAB2Q5VUJ9 269 aa13.03□□□□□ -0.32
CLRN1-201ENST00000295911 EIF4G2P78344 907 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLRN1-201ENST00000295911 KCNH8Q96L42 1107 aa13.02□□□□□ -0.33
CLRN1-201ENST00000295911 UNC13BO14795 1591 aa13.02□□□□□ -0.33
CLRN1-201ENST00000295911 ABCC1P33527 1531 aa13□□□□□ -0.33
CLRN1-201ENST00000295911 DUOX2Q9NRD8 1548 aa13□□□□□ -0.33
CLRN1-201ENST00000295911 CD44P16070 742 aaKnown RBP13□□□□□ -0.33
CLRN1-201ENST00000295911 WDR7Q9Y4E6 1490 aa12.99□□□□□ -0.33
CLRN1-201ENST00000295911 HIRIP3Q9BW71 556 aaPredicted RBP12.98□□□□□ -0.33
CLRN1-201ENST00000295911 ABCA9Q8IUA7 1624 aa12.98□□□□□ -0.33
CLRN1-201ENST00000295911 ARHGEF12Q9NZN5 1544 aa12.98□□□□□ -0.33
CLRN1-201ENST00000295911 FAM135AQ9P2D6 1515 aa12.98□□□□□ -0.33
CLRN1-201ENST00000295911 ANP32CO43423 234 aa12.97□□□□□ -0.33
CLRN1-201ENST00000295911 HSPA5P11021 654 aaKnown RBP12.97□□□□□ -0.33
CLRN1-201ENST00000295911 IQGAP3Q86VI3 1631 aa12.97□□□□□ -0.33
CLRN1-201ENST00000295911 CCER2I3L3R5 266 aa12.96□□□□□ -0.33
CLRN1-201ENST00000295911 GABBR2O75899 941 aa12.96□□□□□ -0.33
CLRN1-201ENST00000295911 FKBP8Q14318 412 aa12.96□□□□□ -0.33
CLRN1-201ENST00000295911 ERBINQ96RT1 1412 aa12.96□□□□□ -0.33
CLRN1-201ENST00000295911 GTF3C3Q9Y5Q9 886 aa12.96□□□□□ -0.34
CLRN1-201ENST00000295911 RTEL1-TNFRSF6BF6WH68 1400 aa12.95□□□□□ -0.34
CLRN1-201ENST00000295911 NBPF8Q3BBV2 869 aa12.94□□□□□ -0.34
CLRN1-201ENST00000295911 UHRF1BP1Q6BDS2 1440 aa12.94□□□□□ -0.34
CLRN1-201ENST00000295911 MAGI2Q86UL8 1455 aa12.92□□□□□ -0.34
CLRN1-201ENST00000295911 SPATA31E1Q6ZUB1 1445 aa12.91□□□□□ -0.34
CLRN1-201ENST00000295911 NPM1P06748 294 aaKnown RBP eCLIP12.91□□□□□ -0.34
CLRN1-201ENST00000295911 MNX1P50219 401 aaPredicted RBP12.91□□□□□ -0.34
CLRN1-201ENST00000295911 FANCAO15360 1455 aa12.9□□□□□ -0.34
CLRN1-201ENST00000295911 SPAG9O60271 1321 aaKnown RBP12.9□□□□□ -0.34
CLRN1-201ENST00000295911 WASHC2AQ641Q2 1341 aa12.9□□□□□ -0.34
CLRN1-201ENST00000295911 ASXL2Q76L83 1435 aa12.9□□□□□ -0.34
CLRN1-201ENST00000295911 TRAPPC8Q9Y2L5 1435 aa12.9□□□□□ -0.34
CLRN1-201ENST00000295911 CFAP74Q9C0B2 1584 aa12.89□□□□□ -0.35
CLRN1-201ENST00000295911 RALGAPBQ86X10 1494 aa12.89□□□□□ -0.35
CLRN1-201ENST00000295911 ZFYVE16Q7Z3T8 1539 aa12.88□□□□□ -0.35
CLRN1-201ENST00000295911 CCDC144AA2RUR9 1427 aa12.88□□□□□ -0.35
CLRN1-201ENST00000295911 INO80Q9ULG1 1556 aaPredicted RBP12.88□□□□□ -0.35
CLRN1-201ENST00000295911 ATP10AO60312 1499 aa12.88□□□□□ -0.35
CLRN1-201ENST00000295911 CCDC7Q96M83 1385 aa12.88□□□□□ -0.35
CLRN1-201ENST00000295911 CNTLNQ9NXG0 1405 aa12.87□□□□□ -0.35
CLRN1-201ENST00000295911 KDM5CP41229 1560 aa12.87□□□□□ -0.35
CLRN1-201ENST00000295911 DEPDC5O75140 1603 aa12.87□□□□□ -0.35
CLRN1-201ENST00000295911 ARID4BQ4LE39 1312 aaPredicted RBP12.86□□□□□ -0.35
CLRN1-201ENST00000295911 EIF2AK4Q9P2K8 1649 aaKnown RBP12.86□□□□□ -0.35
CLRN1-201ENST00000295911 ATP7AQ04656 1500 aa12.86□□□□□ -0.35
CLRN1-201ENST00000295911 ZRANB1Q9UGI0 708 aa12.85□□□□□ -0.35
CLRN1-201ENST00000295911 ADGRL1O94910 1474 aa12.85□□□□□ -0.35
CLRN1-201ENST00000295911 USP47Q96K76 1375 aa12.83□□□□□ -0.35
CLRN1-201ENST00000295911 TET3O43151 1660 aa12.83□□□□□ -0.36
CLRN1-201ENST00000295911 TRPM1Q7Z4N2 1603 aa12.83□□□□□ -0.36
CLRN1-201ENST00000295911 SCAPERQ9BY12 1400 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 E9PCH4 1651 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 PLA2R1Q13018 1463 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 ZNF326Q5BKZ1 582 aaKnown RBP12.82□□□□□ -0.36
CLRN1-201ENST00000295911 AMER1Q5JTC6 1135 aaPredicted RBP12.82□□□□□ -0.36
CLRN1-201ENST00000295911 AFAP1Q8N556 730 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 DCAF11Q8TEB1 546 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 LAMC1P11047 1609 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 SPHKAPQ2M3C7 1700 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 BCORL1Q5H9F3 1711 aa12.82□□□□□ -0.36
CLRN1-201ENST00000295911 KIF7Q2M1P5 1343 aa12.81□□□□□ -0.36
CLRN1-201ENST00000295911 KANK1Q14678 1352 aa12.81□□□□□ -0.36
CLRN1-201ENST00000295911 CEP152O94986 1710 aa12.81□□□□□ -0.36
CLRN1-201ENST00000295911 C11orf95C9JLR9 678 aaPredicted RBP12.8□□□□□ -0.36
CLRN1-201ENST00000295911 RTN4Q9NQC3 1192 aaKnown RBP12.8□□□□□ -0.36
CLRN1-201ENST00000295911 KIDINS220Q9ULH0 1771 aa12.8□□□□□ -0.36
CLRN1-201ENST00000295911 ZNF579Q8NAF0 562 aaKnown RBP12.79□□□□□ -0.36
CLRN1-201ENST00000295911 CARD11Q9BXL7 1154 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms