RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ARID3AQ99856 593 aa11.53□□□□□ -0.56
CUX1-201ENST00000292535 DDX11L8A8MPP1 907 aa11.52□□□□□ -0.56
CUX1-201ENST00000292535 SETD5Q9C0A6 1442 aa11.52□□□□□ -0.56
CUX1-201ENST00000292535 TPD52L1Q16890 204 aaPredicted RBP11.52□□□□□ -0.57
CUX1-201ENST00000292535 ANKRD30AQ9BXX3 1397 aa11.52□□□□□ -0.57
CUX1-201ENST00000292535 SMC4Q9NTJ3 1288 aa11.51□□□□□ -0.57
CUX1-201ENST00000292535 TRIM34Q9BYJ4 488 aa11.51□□□□□ -0.57
CUX1-201ENST00000292535 MFAP1P55081 439 aaKnown RBP11.51□□□□□ -0.57
CUX1-201ENST00000292535 SYNE3Q6ZMZ3 975 aa11.5□□□□□ -0.57
CUX1-201ENST00000292535 CTDP1Q9Y5B0 961 aaPredicted RBP11.5□□□□□ -0.57
CUX1-201ENST00000292535 PES1O00541 588 aaKnown RBP11.5□□□□□ -0.57
CUX1-201ENST00000292535 ATP6V1DQ9Y5K8 247 aa11.5□□□□□ -0.57
CUX1-201ENST00000292535 IPO7O95373 1038 aaKnown RBP11.49□□□□□ -0.57
CUX1-201ENST00000292535 GPS2Q13227 327 aa11.49□□□□□ -0.57
CUX1-201ENST00000292535 CARMIL1Q5VZK9 1371 aa11.49□□□□□ -0.57
CUX1-201ENST00000292535 CNKSR2Q8WXI2 1034 aa11.49□□□□□ -0.57
CUX1-201ENST00000292535 ANO8Q9HCE9 1232 aaPredicted RBP11.49□□□□□ -0.57
CUX1-201ENST00000292535 ANKRD20A12PQ8NF67 263 aa11.48□□□□□ -0.57
CUX1-201ENST00000292535 FAM184AQ8NB25 1140 aa11.48□□□□□ -0.57
CUX1-201ENST00000292535 GOLGA6L19H0YKK7 550 aa11.48□□□□□ -0.57
CUX1-201ENST00000292535 AMPHP49418 695 aa11.48□□□□□ -0.57
CUX1-201ENST00000292535 PDE3BQ13370 1112 aa11.48□□□□□ -0.57
CUX1-201ENST00000292535 GZF1Q9H116 711 aaPredicted RBP11.48□□□□□ -0.57
CUX1-201ENST00000292535 PKD2Q13563 968 aa11.47□□□□□ -0.57
CUX1-201ENST00000292535 FMN1Q68DA7 1419 aa11.47□□□□□ -0.57
CUX1-201ENST00000292535 CCDC47Q96A33 483 aaKnown RBP11.47□□□□□ -0.57
CUX1-201ENST00000292535 HOOK1Q9UJC3 728 aaKnown RBP11.47□□□□□ -0.57
CUX1-201ENST00000292535 HSPA5P11021 654 aaKnown RBP11.47□□□□□ -0.57
CUX1-201ENST00000292535 SLC4A10Q6U841 1118 aa11.47□□□□□ -0.57
CUX1-201ENST00000292535 CENPJQ9HC77 1338 aaPredicted RBP11.47□□□□□ -0.57
CUX1-201ENST00000292535 C1orf141Q5JVX7 400 aa11.46□□□□□ -0.58
CUX1-201ENST00000292535 BECN2A8MW95 431 aa11.46□□□□□ -0.58
CUX1-201ENST00000292535 TEX35Q5T0J7 233 aa11.45□□□□□ -0.58
CUX1-201ENST00000292535 UACAQ9BZF9 1416 aa11.45□□□□□ -0.58
CUX1-201ENST00000292535 CPLX2Q6PUV4 134 aaKnown RBP11.45□□□□□ -0.58
CUX1-201ENST00000292535 RUFY2Q8WXA3 655 aa11.45□□□□□ -0.58
CUX1-201ENST00000292535 NLRP13Q86W25 1043 aa11.44□□□□□ -0.58
CUX1-201ENST00000292535 NGDNQ8NEJ9 315 aaKnown RBP11.44□□□□□ -0.58
CUX1-201ENST00000292535 RRP12Q5JTH9 1297 aaKnown RBP11.44□□□□□ -0.58
CUX1-201ENST00000292535 BAZ1AQ9NRL2 1556 aaPredicted RBP11.44□□□□□ -0.58
CUX1-201ENST00000292535 CDR1P51861 262 aa11.43□□□□□ -0.58
CUX1-201ENST00000292535 RSPH4AQ5TD94 716 aa11.43□□□□□ -0.58
CUX1-201ENST00000292535 DIAPH3Q9NSV4 1193 aa11.43□□□□□ -0.58
CUX1-201ENST00000292535 TRIM29Q14134 588 aa11.43□□□□□ -0.58
CUX1-201ENST00000292535 MCTP1Q6DN14 999 aa11.43□□□□□ -0.58
CUX1-201ENST00000292535 FBXO3Q9UK99 471 aa11.42□□□□□ -0.58
CUX1-201ENST00000292535 CGNL1Q0VF96 1302 aa11.42□□□□□ -0.58
CUX1-201ENST00000292535 RDXP35241 583 aaKnown RBP11.42□□□□□ -0.58
CUX1-201ENST00000292535 CCAR2Q8N163 923 aaKnown RBP11.42□□□□□ -0.58
CUX1-201ENST00000292535 SKOR2Q2VWA4 1001 aaPredicted RBP11.42□□□□□ -0.58
CUX1-201ENST00000292535 VPS37DQ86XT2 251 aa11.42□□□□□ -0.58
CUX1-201ENST00000292535 COG3Q96JB2 828 aa11.42□□□□□ -0.58
CUX1-201ENST00000292535 CUX2O14529 1486 aa11.41□□□□□ -0.58
CUX1-201ENST00000292535 ROCK1Q13464 1354 aa11.41□□□□□ -0.58
CUX1-201ENST00000292535 EFCAB2Q5VUJ9 269 aa11.41□□□□□ -0.58
CUX1-201ENST00000292535 NEXNQ0ZGT2 675 aa11.41□□□□□ -0.58
CUX1-201ENST00000292535 CCDC43Q96MW1 224 aaKnown RBP11.41□□□□□ -0.58
CUX1-201ENST00000292535 CPLX1O14810 134 aa11.41□□□□□ -0.58
CUX1-201ENST00000292535 EVA1CP58658 441 aa11.41□□□□□ -0.58
CUX1-201ENST00000292535 ZKSCAN1P17029 563 aaPredicted RBP11.4□□□□□ -0.58
CUX1-201ENST00000292535 TTC5Q8N0Z6 440 aa11.4□□□□□ -0.58
CUX1-201ENST00000292535 CWC22Q9HCG8 908 aaKnown RBP11.4□□□□□ -0.58
CUX1-201ENST00000292535 RNF20Q5VTR2 975 aa11.4□□□□□ -0.58
CUX1-201ENST00000292535 WASHC2CQ9Y4E1 1318 aa11.4□□□□□ -0.58
CUX1-201ENST00000292535 NUP155O75694 1391 aa11.4□□□□□ -0.58
CUX1-201ENST00000292535 AK7Q96M32 723 aa11.4□□□□□ -0.59
CUX1-201ENST00000292535 WASHC2AQ641Q2 1341 aa11.39□□□□□ -0.59
CUX1-201ENST00000292535 RBM19Q9Y4C8 960 aaKnown RBP11.39□□□□□ -0.59
CUX1-201ENST00000292535 ACBD3Q9H3P7 528 aa11.39□□□□□ -0.59
CUX1-201ENST00000292535 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.39□□□□□ -0.59
CUX1-201ENST00000292535 KIF15Q9NS87 1388 aa11.39□□□□□ -0.59
CUX1-201ENST00000292535 TRDNQ13061 729 aa11.39□□□□□ -0.59
CUX1-201ENST00000292535 EPS15P42566 896 aa11.38□□□□□ -0.59
CUX1-201ENST00000292535 HSP90AA2PQ14568 343 aaPredicted RBP11.38□□□□□ -0.59
CUX1-201ENST00000292535 R3HCC1Q9Y3T6 440 aaKnown RBP11.38□□□□□ -0.59
CUX1-201ENST00000292535 LTV1Q96GA3 475 aaPredicted RBP11.38□□□□□ -0.59
CUX1-201ENST00000292535 WWC1Q8IX03 1113 aa11.38□□□□□ -0.59
CUX1-201ENST00000292535 NOL8Q76FK4 1167 aaKnown RBP11.38□□□□□ -0.59
CUX1-201ENST00000292535 DHX16O60231 1041 aaKnown RBP11.38□□□□□ -0.59
CUX1-201ENST00000292535 IPO9Q96P70 1041 aaKnown RBP11.38□□□□□ -0.59
CUX1-201ENST00000292535 MEX3CQ5U5Q3 659 aaKnown RBP11.37□□□□□ -0.59
CUX1-201ENST00000292535 MPHOSPH9Q99550 1183 aa11.37□□□□□ -0.59
CUX1-201ENST00000292535 ERICH2A1L162 156 aa11.37□□□□□ -0.59
CUX1-201ENST00000292535 CALRP27797 417 aaKnown RBP11.37□□□□□ -0.59
CUX1-201ENST00000292535 RILPL2Q969X0 211 aa11.37□□□□□ -0.59
CUX1-201ENST00000292535 GOLGA4Q13439 2230 aaKnown RBP11.37□□□□□ -0.59
CUX1-201ENST00000292535 PDS5BQ9NTI5 1447 aa11.37□□□□□ -0.59
CUX1-201ENST00000292535 REC8O95072 547 aa11.37□□□□□ -0.59
CUX1-201ENST00000292535 MYO6Q9UM54 1294 aa11.37□□□□□ -0.59
CUX1-201ENST00000292535 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.36□□□□□ -0.593e-6■□□□□ 10.3
CUX1-201ENST00000292535 PCMTD1Q96MG8 357 aaPredicted RBP11.36□□□□□ -0.59
CUX1-201ENST00000292535 CCDC146Q8IYE0 955 aa11.36□□□□□ -0.59
CUX1-201ENST00000292535 ODF2Q5BJF6 829 aa11.36□□□□□ -0.59
CUX1-201ENST00000292535 RAD21O60216 631 aa11.36□□□□□ -0.59
CUX1-201ENST00000292535 NFXL1Q6ZNB6 911 aa11.36□□□□□ -0.59
CUX1-201ENST00000292535 C9orf78Q9NZ63 289 aaPredicted RBP11.35□□□□□ -0.59
CUX1-201ENST00000292535 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.35□□□□□ -0.598e-7■■■■■ 154.8
CUX1-201ENST00000292535 SAFBQ15424 915 aaKnown RBP eCLIP11.35□□□□□ -0.59
CUX1-201ENST00000292535 CT47A1Q5JQC4 288 aaPredicted RBP11.35□□□□□ -0.59
CUX1-201ENST00000292535 CCDC18Q5T9S5 1454 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms