RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 MLLT3P42568 568 aaPredicted RBP8.17□□□□□ -1.1
CD44-202ENST00000278385 ARHGAP33O14559 1287 aa8.16□□□□□ -1.1
CD44-202ENST00000278385 CERKQ8TCT0 537 aa8.16□□□□□ -1.1
CD44-202ENST00000278385 STAC3Q96MF2 364 aa8.16□□□□□ -1.1
CD44-202ENST00000278385 KCNK17Q96T54 332 aa8.16□□□□□ -1.1
CD44-202ENST00000278385 BCL2L12Q9HB09 334 aa8.16□□□□□ -1.1
CD44-202ENST00000278385 EN1Q05925 392 aaPredicted RBP8.15□□□□□ -1.1
CD44-202ENST00000278385 PCDH10Q9P2E7 1040 aa8.15□□□□□ -1.1
CD44-202ENST00000278385 OSBPP22059 807 aa8.14□□□□□ -1.11
CD44-202ENST00000278385 RANGAP1P46060 587 aaPredicted RBP8.14□□□□□ -1.11
CD44-202ENST00000278385 LCE2DQ5TA82 110 aaPredicted RBP8.14□□□□□ -1.11
CD44-202ENST00000278385 ADAM33Q9BZ11 813 aa8.14□□□□□ -1.11
CD44-202ENST00000278385 C6orf132Q5T0Z8 1188 aa8.13□□□□□ -1.11
CD44-202ENST00000278385 GPIHBP1Q8IV16 184 aa8.12□□□□□ -1.11
CD44-202ENST00000278385 CDAN1Q8IWY9 1227 aa8.12□□□□□ -1.11
CD44-202ENST00000278385 FCHSD2O94868 740 aa8.11□□□□□ -1.11
CD44-202ENST00000278385 PPP1R3GB7ZBB8 358 aa8.1□□□□□ -1.11
CD44-202ENST00000278385 LMOD2Q6P5Q4 547 aa8.1□□□□□ -1.11
CD44-202ENST00000278385 RBM26Q5T8P6 1007 aaKnown RBP8.09□□□□□ -1.11
CD44-202ENST00000278385 ANKRD13DQ6ZTN6 518 aa8.09□□□□□ -1.11
CD44-202ENST00000278385 AXIN2Q9Y2T1 843 aa8.09□□□□□ -1.11
CD44-202ENST00000278385 PSEN2P49810 448 aa8.08□□□□□ -1.12
CD44-202ENST00000278385 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.08□□□□□ -1.12
CD44-202ENST00000278385 PACS2Q86VP3 889 aa8.08□□□□□ -1.12
CD44-202ENST00000278385 LSM11P83369 360 aaKnown RBP eCLIP8.07□□□□□ -1.12
CD44-202ENST00000278385 TSR1Q2NL82 804 aaKnown RBP8.07□□□□□ -1.12
CD44-202ENST00000278385 POTEB3A0JP26 581 aa8.05□□□□□ -1.12
CD44-202ENST00000278385 GOLGA8CPA6NN73 597 aa8.05□□□□□ -1.12
CD44-202ENST00000278385 TK2O00142 265 aa8.05□□□□□ -1.12
CD44-202ENST00000278385 HIC1Q14526 733 aa8.05□□□□□ -1.12
CD44-202ENST00000278385 POTEBQ6S5H4 581 aa8.05□□□□□ -1.12
CD44-202ENST00000278385 NBPF3Q9H094 633 aa8.05□□□□□ -1.12
CD44-202ENST00000278385 PRSS12P56730 875 aa8.04□□□□□ -1.12
CD44-202ENST00000278385 TMEM132AQ24JP5 1023 aa8.04□□□□□ -1.12
CD44-202ENST00000278385 KRI1Q8N9T8 703 aaKnown RBP8.04□□□□□ -1.12
CD44-202ENST00000278385 ONECUT3O60422 494 aaPredicted RBP8.03□□□□□ -1.12
CD44-202ENST00000278385 HDGFP51858 240 aaKnown RBP8.03□□□□□ -1.12
CD44-202ENST00000278385 CDCA7LQ96GN5 454 aa8.03□□□□□ -1.12
CD44-202ENST00000278385 SLC4A5Q9BY07 1137 aa8.03□□□□□ -1.12
CD44-202ENST00000278385 RBM27Q9P2N5 1060 aaKnown RBP8.03□□□□□ -1.12
CD44-202ENST00000278385 NBPF26B4DH59 902 aa8.02□□□□□ -1.13
CD44-202ENST00000278385 GNPATO15228 680 aa8.02□□□□□ -1.13
CD44-202ENST00000278385 COL9A1P20849 921 aa8.02□□□□□ -1.13
CD44-202ENST00000278385 PTGDRQ13258 359 aa8.02□□□□□ -1.13
CD44-202ENST00000278385 ZBED2Q9BTP6 218 aa8.02□□□□□ -1.13
CD44-202ENST00000278385 CDHR5Q9HBB8 845 aa8.02□□□□□ -1.13
CD44-202ENST00000278385 TRIM6-TRIM34B2RNG4 842 aa8.01□□□□□ -1.13
CD44-202ENST00000278385 SLC4A3P48751 1232 aa8.01□□□□□ -1.13
CD44-202ENST00000278385 DMRTA1Q5VZB9 504 aa8.01□□□□□ -1.13
CD44-202ENST00000278385 ADGRD1Q6QNK2 874 aa8.01□□□□□ -1.13
CD44-202ENST00000278385 PRIM1P49642 420 aaKnown RBP8□□□□□ -1.13
CD44-202ENST00000278385 MRPL50Q8N5N7 158 aaKnown RBP8□□□□□ -1.13
CD44-202ENST00000278385 RABGEF1Q9UJ41 708 aa8□□□□□ -1.13
CD44-202ENST00000278385 VPS9D1Q9Y2B5 631 aa8□□□□□ -1.13
CD44-202ENST00000278385 PODXL2Q9NZ53 605 aa7.99□□□□□ -1.13
CD44-202ENST00000278385 KIAA1468Q9P260 1216 aa7.99□□□□□ -1.13
CD44-202ENST00000278385 OATP04181 439 aa7.98□□□□□ -1.13
CD44-202ENST00000278385 PROX2Q3B8N5 592 aa7.98□□□□□ -1.13
CD44-202ENST00000278385 POTEEQ6S8J3 1075 aa7.98□□□□□ -1.13
CD44-202ENST00000278385 PADI6Q6TGC4 694 aa7.98□□□□□ -1.13
CD44-202ENST00000278385 RBM46Q8TBY0 533 aaKnown RBP7.98□□□□□ -1.13
CD44-202ENST00000278385 CCDC180Q9P1Z9 1646 aa7.97□□□□□ -1.13
CD44-202ENST00000278385 NPDC1Q9NQX5 325 aaPredicted RBP7.97□□□□□ -1.13
CD44-202ENST00000278385 PNMA3Q9UL41 463 aa7.97□□□□□ -1.13
CD44-202ENST00000278385 ABCC9O60706 1549 aa7.97□□□□□ -1.13
CD44-202ENST00000278385 C14orf37Q86TY3 774 aa7.96□□□□□ -1.14
CD44-202ENST00000278385 LAPTM4BQ86VI4 370 aa7.96□□□□□ -1.14
CD44-202ENST00000278385 ZC3H15Q8WU90 426 aaKnown RBP7.96□□□□□ -1.14
CD44-202ENST00000278385 KRTAP3-3Q9BYR6 98 aa7.96□□□□□ -1.14
CD44-202ENST00000278385 KRTAP3-2Q9BYR7 98 aa7.96□□□□□ -1.14
CD44-202ENST00000278385 TATDN2Q93075 761 aa7.95□□□□□ -1.14
CD44-202ENST00000278385 MINK1Q8N4C8 1332 aaPredicted RBP7.95□□□□□ -1.14
CD44-202ENST00000278385 MAP2K5Q13163 448 aa7.94□□□□□ -1.14
CD44-202ENST00000278385 NUDT18Q6ZVK8 323 aa7.94□□□□□ -1.14
CD44-202ENST00000278385 TSKSQ9UJT2 592 aa7.94□□□□□ -1.14
CD44-202ENST00000278385 FAM98CQ17RN3 349 aaKnown RBP7.93□□□□□ -1.14
CD44-202ENST00000278385 RSPH4AQ5TD94 716 aa7.92□□□□□ -1.14
CD44-202ENST00000278385 ANKK1Q8NFD2 765 aa7.92□□□□□ -1.14
CD44-202ENST00000278385 SEPT9Q9UHD8 586 aaPredicted RBP7.92□□□□□ -1.14
CD44-202ENST00000278385 MYT1LQ9UL68 1186 aa7.92□□□□□ -1.14
CD44-202ENST00000278385 ZMYND10O75800 440 aa7.91□□□□□ -1.14
CD44-202ENST00000278385 BARGINQ6ZT62 677 aa7.91□□□□□ -1.14
CD44-202ENST00000278385 NECTIN2Q92692 538 aa7.91□□□□□ -1.14
CD44-202ENST00000278385 WNT2BQ93097 391 aa7.9□□□□□ -1.14
CD44-202ENST00000278385 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.89□□□□□ -1.15
CD44-202ENST00000278385 SMAPO00193 183 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 IRF6O14896 467 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 HRO43593 1189 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 DNAJB2P25686 324 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 TTC13Q8NBP0 860 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 LRCH3Q96II8 777 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 AK7Q96M32 723 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 ADGRG1Q9Y653 693 aa7.89□□□□□ -1.15
CD44-202ENST00000278385 BHMG1C9JSJ3 638 aaPredicted RBP7.88□□□□□ -1.15
CD44-202ENST00000278385 GPR37O15354 613 aa7.88□□□□□ -1.15
CD44-202ENST00000278385 RNF40O75150 1001 aa7.88□□□□□ -1.15
CD44-202ENST00000278385 ZFRQ96KR1 1074 aaKnown RBP7.88□□□□□ -1.15
CD44-202ENST00000278385 FECHP22830 423 aa7.87□□□□□ -1.15
CD44-202ENST00000278385 SPNS2Q8IVW8 549 aa7.87□□□□□ -1.15
CD44-202ENST00000278385 KCTD12Q96CX2 325 aaKnown RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms