RNA–Protein interactions for RNA: ENST00000272638.13

UBXN4-201, Transcript of UBX domain protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBXN4, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-201ENST00000272638 ESF1Q9H501 851 aaKnown RBP16.48■□□□□ 0.23
UBXN4-201ENST00000272638 RRP7AQ9Y3A4 280 aaKnown RBP16.48■□□□□ 0.23
UBXN4-201ENST00000272638 PNISRQ8TF01 805 aaKnown RBP16.48■□□□□ 0.23
UBXN4-201ENST00000272638 GPATCH8Q9UKJ3 1502 aaKnown RBP16.48■□□□□ 0.23
UBXN4-201ENST00000272638 SYNJ2O15056 1496 aa16.48■□□□□ 0.23
UBXN4-201ENST00000272638 KANK1Q14678 1352 aa16.48■□□□□ 0.23
UBXN4-201ENST00000272638 ARHGAP5Q13017 1502 aa16.47■□□□□ 0.23
UBXN4-201ENST00000272638 U2SURPO15042 1029 aaKnown RBP16.47■□□□□ 0.23
UBXN4-201ENST00000272638 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.47■□□□□ 0.23
UBXN4-201ENST00000272638 RPRD2Q5VT52 1461 aaKnown RBP16.46■□□□□ 0.23
UBXN4-201ENST00000272638 CFAP70Q5T0N1 1121 aa16.46■□□□□ 0.22
UBXN4-201ENST00000272638 MORC1Q86VD1 984 aa16.45■□□□□ 0.22
UBXN4-201ENST00000272638 MAGI1Q96QZ7 1491 aaPredicted RBP16.45■□□□□ 0.22
UBXN4-201ENST00000272638 TMEM132EQ6IEE7 984 aa16.44■□□□□ 0.22
UBXN4-201ENST00000272638 NOP58Q9Y2X3 529 aaKnown RBP16.44■□□□□ 0.22
UBXN4-201ENST00000272638 SRPK2P78362 688 aaKnown RBP16.44■□□□□ 0.22
UBXN4-201ENST00000272638 ABCA5Q8WWZ7 1642 aa16.43■□□□□ 0.22
UBXN4-201ENST00000272638 POGKQ9P215 609 aa16.43■□□□□ 0.22
UBXN4-201ENST00000272638 NEFMP07197 916 aa16.42■□□□□ 0.22
UBXN4-201ENST00000272638 SKAP1Q86WV1 359 aa16.42■□□□□ 0.22
UBXN4-201ENST00000272638 ADAMTS8Q9UP79 889 aa16.42■□□□□ 0.22
UBXN4-201ENST00000272638 KDM6BO15054 1643 aa16.42■□□□□ 0.22
UBXN4-201ENST00000272638 WASHC2CQ9Y4E1 1318 aa16.42■□□□□ 0.22
UBXN4-201ENST00000272638 RRP1P56182 461 aaKnown RBP16.42■□□□□ 0.22
UBXN4-201ENST00000272638 DISP1Q96F81 1524 aa16.41■□□□□ 0.22
UBXN4-201ENST00000272638 APAF1O14727 1248 aa16.41■□□□□ 0.22
UBXN4-201ENST00000272638 WDR62O43379 1518 aa16.4■□□□□ 0.22
UBXN4-201ENST00000272638 ADAMTS12P58397 1594 aa16.4■□□□□ 0.22
UBXN4-201ENST00000272638 ATP10BO94823 1461 aa16.4■□□□□ 0.22
UBXN4-201ENST00000272638 BCL2L13Q9BXK5 485 aa16.4■□□□□ 0.22
UBXN4-201ENST00000272638 ARXQ96QS3 562 aa16.4■□□□□ 0.22
UBXN4-201ENST00000272638 CRBNQ96SW2 442 aa16.4■□□□□ 0.22
UBXN4-201ENST00000272638 ERICH6BQ5W0A0 696 aa16.39■□□□□ 0.21
UBXN4-201ENST00000272638 SOX12O15370 315 aa16.39■□□□□ 0.21
UBXN4-201ENST00000272638 CLUAP1Q96AJ1 413 aa16.38■□□□□ 0.21
UBXN4-201ENST00000272638 SAMD9Q5K651 1589 aa16.38■□□□□ 0.21
UBXN4-201ENST00000272638 CYB5RLQ6IPT4 315 aa16.37■□□□□ 0.21
UBXN4-201ENST00000272638 U2AF1L5P0DN76 240 aaPredicted RBP16.36■□□□□ 0.21
UBXN4-201ENST00000272638 U2AF1Q01081 240 aaKnown RBP eCLIP16.36■□□□□ 0.21
UBXN4-201ENST00000272638 GOLGA2Q08379 1002 aa16.36■□□□□ 0.21
UBXN4-201ENST00000272638 TCOF1Q13428 1488 aaKnown RBP16.36■□□□□ 0.21
UBXN4-201ENST00000272638 SCAPERQ9BY12 1400 aa16.35■□□□□ 0.21
UBXN4-201ENST00000272638 CFAP53Q96M91 514 aa16.35■□□□□ 0.21
UBXN4-201ENST00000272638 RAPGEF6Q8TEU7 1601 aa16.35■□□□□ 0.21
UBXN4-201ENST00000272638 ARID4BQ4LE39 1312 aaPredicted RBP16.35■□□□□ 0.21
UBXN4-201ENST00000272638 PLEKHH2Q8IVE3 1493 aa16.34■□□□□ 0.21
UBXN4-201ENST00000272638 KIAA0556O60303 1618 aa16.34■□□□□ 0.21
UBXN4-201ENST00000272638 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
UBXN4-201ENST00000272638 SLC4A3P48751 1232 aa16.33■□□□□ 0.21
UBXN4-201ENST00000272638 MSH5O43196 834 aa16.32■□□□□ 0.2
UBXN4-201ENST00000272638 NUTM2FA1L443 756 aa16.32■□□□□ 0.2
UBXN4-201ENST00000272638 RAPGEF3O95398 923 aa16.31■□□□□ 0.2
UBXN4-201ENST00000272638 PZPP20742 1482 aa16.3■□□□□ 0.2
UBXN4-201ENST00000272638 EIF4G3O43432 1585 aaKnown RBP16.3■□□□□ 0.2
UBXN4-201ENST00000272638 CCDC141Q6ZP82 1450 aa16.29■□□□□ 0.2
UBXN4-201ENST00000272638 PPP2R1AP30153 589 aa16.29■□□□□ 0.2
UBXN4-201ENST00000272638 SLC12A5Q9H2X9 1139 aa16.29■□□□□ 0.2
UBXN4-201ENST00000272638 BRD4O60885 1362 aaPredicted RBP16.28■□□□□ 0.2
UBXN4-201ENST00000272638 FTSJ3Q8IY81 847 aaKnown RBP16.28■□□□□ 0.2
UBXN4-201ENST00000272638 MINK1Q8N4C8 1332 aaPredicted RBP16.28■□□□□ 0.2
UBXN4-201ENST00000272638 PDE3BQ13370 1112 aa16.28■□□□□ 0.2
UBXN4-201ENST00000272638 PBRM1Q86U86 1689 aa16.27■□□□□ 0.2
UBXN4-201ENST00000272638 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.27■□□□□ 0.2
UBXN4-201ENST00000272638 PAK3O75914 559 aaPredicted RBP16.27■□□□□ 0.2
UBXN4-201ENST00000272638 MAPK8IP3Q9UPT6 1336 aa16.27■□□□□ 0.19
UBXN4-201ENST00000272638 KIF14Q15058 1648 aa16.27■□□□□ 0.19
UBXN4-201ENST00000272638 DISP3Q9P2K9 1392 aa16.27■□□□□ 0.19
UBXN4-201ENST00000272638 PDE4AP27815 886 aa16.27■□□□□ 0.19
UBXN4-201ENST00000272638 OSCARQ8IYS5 282 aa16.26■□□□□ 0.19
UBXN4-201ENST00000272638 CABP2Q9NPB3 220 aa16.25■□□□□ 0.19
UBXN4-201ENST00000272638 COG6Q9Y2V7 657 aa16.25■□□□□ 0.19
UBXN4-201ENST00000272638 DEKP35659 375 aaKnown RBP16.25■□□□□ 0.19
UBXN4-201ENST00000272638 C20orf194Q5TEA3 1177 aa16.25■□□□□ 0.19
UBXN4-201ENST00000272638 ZBTB7CA1YPR0 619 aa16.24■□□□□ 0.19
UBXN4-201ENST00000272638 SPRYD3Q8NCJ5 442 aa16.23■□□□□ 0.19
UBXN4-201ENST00000272638 IPO9Q96P70 1041 aaKnown RBP16.23■□□□□ 0.19
UBXN4-201ENST00000272638 EIF3AQ14152 1382 aaKnown RBP16.23■□□□□ 0.19
UBXN4-201ENST00000272638 RTN4Q9NQC3 1192 aaKnown RBP16.23■□□□□ 0.19
UBXN4-201ENST00000272638 TEX14Q8IWB6 1497 aa16.23■□□□□ 0.19
UBXN4-201ENST00000272638 ERBINQ96RT1 1412 aa16.23■□□□□ 0.19
UBXN4-201ENST00000272638 TCERG1O14776 1098 aaKnown RBP16.23■□□□□ 0.19
UBXN4-201ENST00000272638 C14orf37Q86TY3 774 aa16.22■□□□□ 0.19
UBXN4-201ENST00000272638 ADGRF5Q8IZF2 1346 aa16.22■□□□□ 0.19
UBXN4-201ENST00000272638 DENND4BO75064 1496 aaPredicted RBP16.22■□□□□ 0.19
UBXN4-201ENST00000272638 GGNBP2Q9H3C7 697 aa16.22■□□□□ 0.19
UBXN4-201ENST00000272638 UPF2Q9HAU5 1272 aaKnown RBP16.22■□□□□ 0.19
UBXN4-201ENST00000272638 CENPJQ9HC77 1338 aaPredicted RBP16.21■□□□□ 0.19
UBXN4-201ENST00000272638 FANCIQ9NVI1 1328 aa16.21■□□□□ 0.19
UBXN4-201ENST00000272638 BCAR3O75815 825 aa16.21■□□□□ 0.19
UBXN4-201ENST00000272638 DHX29Q7Z478 1369 aaKnown RBP16.21■□□□□ 0.19
UBXN4-201ENST00000272638 SMG6Q86US8 1419 aaKnown RBP16.2■□□□□ 0.18
UBXN4-201ENST00000272638 ELL2O00472 640 aaPredicted RBP16.2■□□□□ 0.18
UBXN4-201ENST00000272638 CEP170Q5SW79 1584 aa16.2■□□□□ 0.18
UBXN4-201ENST00000272638 SYCP2Q9BX26 1530 aa16.19■□□□□ 0.18
UBXN4-201ENST00000272638 PANK1Q8TE04 598 aa16.19■□□□□ 0.18
UBXN4-201ENST00000272638 MTHFSP49914 203 aa16.18■□□□□ 0.18
UBXN4-201ENST00000272638 DNMT1P26358 1616 aaKnown RBP16.18■□□□□ 0.18
UBXN4-201ENST00000272638 TESK2Q96S53 571 aa16.17■□□□□ 0.18
UBXN4-201ENST00000272638 TRAPPC8Q9Y2L5 1435 aa16.16■□□□□ 0.18
UBXN4-201ENST00000272638 NUP160Q12769 1436 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms