RNA–Protein interactions for RNA: ENST00000261799.8

PDGFRB-201, Transcript of platelet derived growth factor receptor beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRB, Length 5,717 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-201ENST00000261799 CTDP1Q9Y5B0 961 aaPredicted RBP17.12■□□□□ 0.33
PDGFRB-201ENST00000261799 HMMRO75330 724 aa17.12■□□□□ 0.33
PDGFRB-201ENST00000261799 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.33
PDGFRB-201ENST00000261799 POGZQ7Z3K3 1410 aa17.12■□□□□ 0.33
PDGFRB-201ENST00000261799 GRIN2BQ13224 1484 aa17.12■□□□□ 0.33
PDGFRB-201ENST00000261799 TRIM44Q96DX7 344 aaPredicted RBP17.11■□□□□ 0.33
PDGFRB-201ENST00000261799 MINK1Q8N4C8 1332 aaPredicted RBP17.11■□□□□ 0.33
PDGFRB-201ENST00000261799 CWC22Q9HCG8 908 aaKnown RBP17.1■□□□□ 0.33
PDGFRB-201ENST00000261799 NRDCO43847 1150 aa17.1■□□□□ 0.33
PDGFRB-201ENST00000261799 RAD54L2Q9Y4B4 1467 aa17.1■□□□□ 0.33
PDGFRB-201ENST00000261799 TEFQ10587 303 aa17.1■□□□□ 0.33
PDGFRB-201ENST00000261799 AMOTL1Q8IY63 956 aa17.09■□□□□ 0.33
PDGFRB-201ENST00000261799 IFT140Q96RY7 1462 aa17.09■□□□□ 0.33
PDGFRB-201ENST00000261799 NBR1Q14596 966 aa17.09■□□□□ 0.33
PDGFRB-201ENST00000261799 SLC4A10Q6U841 1118 aa17.08■□□□□ 0.33
PDGFRB-201ENST00000261799 PROSER2Q86WR7 435 aaPredicted RBP17.08■□□□□ 0.32
PDGFRB-201ENST00000261799 FBXW7Q969H0 707 aa17.07■□□□□ 0.32
PDGFRB-201ENST00000261799 CGNL1Q0VF96 1302 aa17.07■□□□□ 0.32
PDGFRB-201ENST00000261799 RAB3GAP2Q9H2M9 1393 aa17.07■□□□□ 0.32
PDGFRB-201ENST00000261799 ARHGAP5Q13017 1502 aa17.07■□□□□ 0.32
PDGFRB-201ENST00000261799 HSCBQ8IWL3 235 aa17.07■□□□□ 0.32
PDGFRB-201ENST00000261799 VPS53Q5VIR6 699 aa17.06■□□□□ 0.32
PDGFRB-201ENST00000261799 PRG4Q92954 1404 aaPredicted RBP17.05■□□□□ 0.32
PDGFRB-201ENST00000261799 NCAPD3P42695 1498 aa17.05■□□□□ 0.32
PDGFRB-201ENST00000261799 SUPT16HQ9Y5B9 1047 aaKnown RBP17.05■□□□□ 0.32
PDGFRB-201ENST00000261799 GPRASP1Q5JY77 1395 aa17.05■□□□□ 0.32
PDGFRB-201ENST00000261799 SMC4Q9NTJ3 1288 aa17.04■□□□□ 0.32
PDGFRB-201ENST00000261799 TOMM22Q9NS69 142 aa17.04■□□□□ 0.32
PDGFRB-201ENST00000261799 DHX57Q6P158 1386 aaKnown RBP17.04■□□□□ 0.32
PDGFRB-201ENST00000261799 HSP90B1P14625 803 aaKnown RBP17.03■□□□□ 0.32
PDGFRB-201ENST00000261799 RAPGEF4Q8WZA2 1011 aa17.03■□□□□ 0.32
PDGFRB-201ENST00000261799 NEXNQ0ZGT2 675 aa17.03■□□□□ 0.32
PDGFRB-201ENST00000261799 SYNJ2O15056 1496 aa17.03■□□□□ 0.32
PDGFRB-201ENST00000261799 RWDD1Q9H446 243 aaPredicted RBP17.03■□□□□ 0.32
PDGFRB-201ENST00000261799 THEMISQ8N1K5 641 aaPredicted RBP17.02■□□□□ 0.32
PDGFRB-201ENST00000261799 CC2D2AQ9P2K1 1620 aa17.02■□□□□ 0.32
PDGFRB-201ENST00000261799 PLCB2Q00722 1185 aa17.02■□□□□ 0.32
PDGFRB-201ENST00000261799 KIAA2012Q0VF49 1180 aa17.01■□□□□ 0.31
PDGFRB-201ENST00000261799 HTATSF1O43719 755 aaKnown RBP17.01■□□□□ 0.31
PDGFRB-201ENST00000261799 MARCH6O60337 910 aa17.01■□□□□ 0.31
PDGFRB-201ENST00000261799 RBM33Q96EV2 1170 aaKnown RBP17■□□□□ 0.31
PDGFRB-201ENST00000261799 PIP4K2BP78356 416 aa17■□□□□ 0.31
PDGFRB-201ENST00000261799 TXNDC2Q86VQ3 553 aa16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 VPS37DQ86XT2 251 aa16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 NUTM2BA6NNL0 878 aaPredicted RBP16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 NUTM2EB1AL46 878 aaPredicted RBP16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 TRIM6-TRIM34B2RNG4 842 aa16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 L1TD1Q5T7N2 865 aaKnown RBP16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 NUTM2AQ8IVF1 878 aaPredicted RBP16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 CHAF1AQ13111 956 aaPredicted RBP16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 PPP4R2Q9NY27 417 aa16.99■□□□□ 0.31
PDGFRB-201ENST00000261799 NGEFQ8N5V2 710 aa16.98■□□□□ 0.31
PDGFRB-201ENST00000261799 CCDC34Q96HJ3 373 aa16.98■□□□□ 0.31
PDGFRB-201ENST00000261799 MYOM3Q5VTT5 1437 aa16.98■□□□□ 0.31
PDGFRB-201ENST00000261799 TCEAL9Q9UHQ7 104 aa16.98■□□□□ 0.31
PDGFRB-201ENST00000261799 NLRP2Q9NX02 1062 aa16.97■□□□□ 0.31
PDGFRB-201ENST00000261799 ESCO1Q5FWF5 840 aa16.97■□□□□ 0.31
PDGFRB-201ENST00000261799 RASSF8Q8NHQ8 419 aa16.97■□□□□ 0.31
PDGFRB-201ENST00000261799 MIA2Q96PC5 1412 aa16.97■□□□□ 0.31
PDGFRB-201ENST00000261799 PHLDB1Q86UU1 1377 aa16.96■□□□□ 0.31
PDGFRB-201ENST00000261799 CUX1P39880 1505 aa16.96■□□□□ 0.31
PDGFRB-201ENST00000261799 DDX58O95786 925 aaKnown RBP16.96■□□□□ 0.31
PDGFRB-201ENST00000261799 LRRFIP1Q32MZ4 808 aaKnown RBP16.96■□□□□ 0.31
PDGFRB-201ENST00000261799 L3MBTL2Q969R5 705 aa16.95■□□□□ 0.3
PDGFRB-201ENST00000261799 DNTTIP2Q5QJE6 756 aaKnown RBP16.95■□□□□ 0.3
PDGFRB-201ENST00000261799 ANKLE2Q86XL3 938 aa16.95■□□□□ 0.3
PDGFRB-201ENST00000261799 CCDC146Q8IYE0 955 aa16.95■□□□□ 0.3
PDGFRB-201ENST00000261799 PMFBP1Q8TBY8 1022 aa16.95■□□□□ 0.3
PDGFRB-201ENST00000261799 KRI1Q8N9T8 703 aaKnown RBP16.94■□□□□ 0.3
PDGFRB-201ENST00000261799 HMGB2P26583 209 aaKnown RBP16.94■□□□□ 0.3
PDGFRB-201ENST00000261799 CCER2I3L3R5 266 aa16.93■□□□□ 0.3
PDGFRB-201ENST00000261799 RAD21O60216 631 aa16.93■□□□□ 0.3
PDGFRB-201ENST00000261799 PPP1R1BQ9UD71 204 aaPredicted RBP16.93■□□□□ 0.3
PDGFRB-201ENST00000261799 PRM3Q9NNZ6 103 aa16.93■□□□□ 0.3
PDGFRB-201ENST00000261799 EIF2S2P20042 333 aaKnown RBP16.93■□□□□ 0.3
PDGFRB-201ENST00000261799 SMG6Q86US8 1419 aaKnown RBP16.91■□□□□ 0.3
PDGFRB-201ENST00000261799 KIF15Q9NS87 1388 aa16.91■□□□□ 0.3
PDGFRB-201ENST00000261799 B4GALNT3Q6L9W6 998 aa16.91■□□□□ 0.3
PDGFRB-201ENST00000261799 STAC3Q96MF2 364 aa16.91■□□□□ 0.3
PDGFRB-201ENST00000261799 DIAPH1O60610 1272 aaKnown RBP16.9■□□□□ 0.3
PDGFRB-201ENST00000261799 CENPJQ9HC77 1338 aaPredicted RBP16.89■□□□□ 0.29
PDGFRB-201ENST00000261799 STRN4Q9NRL3 753 aa16.89■□□□□ 0.29
PDGFRB-201ENST00000261799 C9orf78Q9NZ63 289 aaPredicted RBP16.89■□□□□ 0.29
PDGFRB-201ENST00000261799 PLEKHH2Q8IVE3 1493 aa16.89■□□□□ 0.29
PDGFRB-201ENST00000261799 IGF1RP08069 1367 aa16.88■□□□□ 0.29
PDGFRB-201ENST00000261799 PANK3Q9H999 370 aa16.88■□□□□ 0.29
PDGFRB-201ENST00000261799 SNAPC4Q5SXM2 1469 aa16.88■□□□□ 0.29
PDGFRB-201ENST00000261799 AKAP17AQ02040 695 aaKnown RBP16.87■□□□□ 0.29
PDGFRB-201ENST00000261799 NLRP13Q86W25 1043 aa16.87■□□□□ 0.29
PDGFRB-201ENST00000261799 NUTM2GQ5VZR2 741 aa16.87■□□□□ 0.29
PDGFRB-201ENST00000261799 TPM4P67936 248 aa16.87■□□□□ 0.29
PDGFRB-201ENST00000261799 DRC7Q8IY82 874 aa16.87■□□□□ 0.29
PDGFRB-201ENST00000261799 CHMP4CQ96CF2 233 aa16.86■□□□□ 0.29
PDGFRB-201ENST00000261799 SYNE3Q6ZMZ3 975 aa16.86■□□□□ 0.29
PDGFRB-201ENST00000261799 RCAN3Q9UKA8 241 aa16.86■□□□□ 0.29
PDGFRB-201ENST00000261799 NLRP6P59044 892 aa16.86■□□□□ 0.29
PDGFRB-201ENST00000261799 USP35Q9P2H5 1018 aa16.86■□□□□ 0.29
PDGFRB-201ENST00000261799 ABTB2Q8N961 1025 aa16.85■□□□□ 0.29
PDGFRB-201ENST00000261799 KIF3AQ9Y496 699 aa16.85■□□□□ 0.29
PDGFRB-201ENST00000261799 NESP48681 1621 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms