RNA–Protein interactions for RNA: ENST00000257262.12

TMEM258-201, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 468 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-201ENST00000257262 PTPRMP28827 1452 aa13.18□□□□□ -0.3
TMEM258-201ENST00000257262 TCOF1Q13428 1488 aaKnown RBP13.18□□□□□ -0.3
TMEM258-201ENST00000257262 MAST1Q9Y2H9 1570 aa13.17□□□□□ -0.3
TMEM258-201ENST00000257262 PLXNC1O60486 1568 aa13.16□□□□□ -0.3
TMEM258-201ENST00000257262 CROCC2H7BZ55 1655 aa13.15□□□□□ -0.3
TMEM258-201ENST00000257262 DNMT1P26358 1616 aaKnown RBP13.15□□□□□ -0.3
TMEM258-201ENST00000257262 DHX29Q7Z478 1369 aaKnown RBP13.15□□□□□ -0.3
TMEM258-201ENST00000257262 ABCC5O15440 1437 aa13.14□□□□□ -0.31
TMEM258-201ENST00000257262 FAM50AQ14320 339 aaKnown RBP13.14□□□□□ -0.31
TMEM258-201ENST00000257262 DAPK1P53355 1430 aa13.13□□□□□ -0.31
TMEM258-201ENST00000257262 GGT6Q6P531 493 aa13.12□□□□□ -0.31
TMEM258-201ENST00000257262 ESF1Q9H501 851 aaKnown RBP13.11□□□□□ -0.31
TMEM258-201ENST00000257262 CHIC2Q9UKJ5 165 aa13.11□□□□□ -0.31
TMEM258-201ENST00000257262 KIF3BO15066 747 aa13.1□□□□□ -0.31
TMEM258-201ENST00000257262 CEBPAP49715 358 aaPredicted RBP13.1□□□□□ -0.31
TMEM258-201ENST00000257262 SHANK2Q9UPX8 1470 aa13.1□□□□□ -0.31
TMEM258-201ENST00000257262 CLTCQ00610 1675 aaKnown RBP13.09□□□□□ -0.31
TMEM258-201ENST00000257262 SAMD1Q6SPF0 538 aaPredicted RBP13.09□□□□□ -0.31
TMEM258-201ENST00000257262 RRP7BPQ9NSQ0 103 aa13.09□□□□□ -0.31
TMEM258-201ENST00000257262 C3P01024 1663 aa13.08□□□□□ -0.31
TMEM258-201ENST00000257262 CAPN15O75808 1086 aa13.08□□□□□ -0.32
TMEM258-201ENST00000257262 MYCNP04198 464 aaPredicted RBP13.07□□□□□ -0.32
TMEM258-201ENST00000257262 FOXD4L1Q9NU39 408 aa13.07□□□□□ -0.32
TMEM258-201ENST00000257262 DUOX2Q9NRD8 1548 aa13.07□□□□□ -0.32
TMEM258-201ENST00000257262 MROH2AA6NES4 1674 aa13.06□□□□□ -0.32
TMEM258-201ENST00000257262 SPINK5Q9NQ38 1064 aaPredicted RBP13.06□□□□□ -0.32
TMEM258-201ENST00000257262 KIF15Q9NS87 1388 aa13.06□□□□□ -0.32
TMEM258-201ENST00000257262 EIF2AK4Q9P2K8 1649 aaKnown RBP13.06□□□□□ -0.32
TMEM258-201ENST00000257262 CNTLNQ9NXG0 1405 aa13.05□□□□□ -0.32
TMEM258-201ENST00000257262 ZMYM3Q14202 1370 aa13.05□□□□□ -0.32
TMEM258-201ENST00000257262 ANKRD30AQ9BXX3 1397 aa13.05□□□□□ -0.32
TMEM258-201ENST00000257262 PTPRKQ15262 1439 aa13.05□□□□□ -0.32
TMEM258-201ENST00000257262 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.04□□□□□ -0.323e-7■□□□□ 11
TMEM258-201ENST00000257262 NCOA1Q15788 1441 aa13.04□□□□□ -0.32
TMEM258-201ENST00000257262 ADGRL2O95490 1459 aa13.04□□□□□ -0.32
TMEM258-201ENST00000257262 ITGAEP38570 1179 aa13.03□□□□□ -0.32
TMEM258-201ENST00000257262 RNF17Q9BXT8 1623 aaKnown RBP13.02□□□□□ -0.32
TMEM258-201ENST00000257262 WASHC2CQ9Y4E1 1318 aa13.02□□□□□ -0.33
TMEM258-201ENST00000257262 ERBINQ96RT1 1412 aa13.02□□□□□ -0.33
TMEM258-201ENST00000257262 RRBP1Q9P2E9 1410 aaKnown RBP13.02□□□□□ -0.33
TMEM258-201ENST00000257262 PREX1Q8TCU6 1659 aa13.02□□□□□ -0.33
TMEM258-201ENST00000257262 MROH1Q8NDA8 1641 aa13□□□□□ -0.33
TMEM258-201ENST00000257262 KDM5DQ9BY66 1539 aa13□□□□□ -0.33
TMEM258-201ENST00000257262 LMTK3Q96Q04 1460 aa13□□□□□ -0.33
TMEM258-201ENST00000257262 FBXO41Q8TF61 875 aa12.99□□□□□ -0.33
TMEM258-201ENST00000257262 FAM135AQ9P2D6 1515 aa12.98□□□□□ -0.33
TMEM258-201ENST00000257262 CEP152O94986 1710 aa12.98□□□□□ -0.33
TMEM258-201ENST00000257262 ZC3H13Q5T200 1668 aaKnown RBP12.98□□□□□ -0.33
TMEM258-201ENST00000257262 DEPDC5O75140 1603 aa12.98□□□□□ -0.33
TMEM258-201ENST00000257262 SETD1BQ9UPS6 1966 aaKnown RBP12.98□□□□□ -0.33
TMEM258-201ENST00000257262 ZNF219Q9P2Y4 722 aaPredicted RBP12.97□□□□□ -0.33
TMEM258-201ENST00000257262 ANKRD50Q9ULJ7 1429 aa12.96□□□□□ -0.33
TMEM258-201ENST00000257262 ROCK1Q13464 1354 aa12.96□□□□□ -0.33
TMEM258-201ENST00000257262 HSPA2P54652 639 aa12.96□□□□□ -0.33
TMEM258-201ENST00000257262 FBXO31Q5XUX0 539 aaPredicted RBP12.96□□□□□ -0.33
TMEM258-201ENST00000257262 ABCC3O15438 1527 aa12.96□□□□□ -0.33
TMEM258-201ENST00000257262 PRDM15P57071 1507 aaPredicted RBP12.96□□□□□ -0.33
TMEM258-201ENST00000257262 NPATQ14207 1427 aa12.96□□□□□ -0.34
TMEM258-201ENST00000257262 UHRF1BP1Q6BDS2 1440 aa12.96□□□□□ -0.34
TMEM258-201ENST00000257262 CAMSAP1Q5T5Y3 1602 aa12.95□□□□□ -0.34
TMEM258-201ENST00000257262 PZPP20742 1482 aa12.93□□□□□ -0.34
TMEM258-201ENST00000257262 KANK1Q14678 1352 aa12.93□□□□□ -0.34
TMEM258-201ENST00000257262 MYO3AQ8NEV4 1616 aa12.92□□□□□ -0.34
TMEM258-201ENST00000257262 DSG3P32926 999 aa12.92□□□□□ -0.34
TMEM258-201ENST00000257262 CFAP65Q6ZU64 1925 aaKnown RBP12.92□□□□□ -0.34
TMEM258-201ENST00000257262 VWDEQ8N2E2 1590 aa12.91□□□□□ -0.34
TMEM258-201ENST00000257262 LMTK2Q8IWU2 1503 aa12.89□□□□□ -0.35
TMEM258-201ENST00000257262 TNRQ92752 1358 aa12.89□□□□□ -0.35
TMEM258-201ENST00000257262 UNC13BO14795 1591 aa12.89□□□□□ -0.35
TMEM258-201ENST00000257262 ZNF142P52746 1687 aaPredicted RBP12.89□□□□□ -0.35
TMEM258-201ENST00000257262 ARHGAP31Q2M1Z3 1444 aa12.88□□□□□ -0.35
TMEM258-201ENST00000257262 SPATA31D1Q6ZQQ2 1576 aa12.88□□□□□ -0.35
TMEM258-201ENST00000257262 CEP170BQ9Y4F5 1589 aaPredicted RBP12.88□□□□□ -0.35
TMEM258-201ENST00000257262 GCC2Q8IWJ2 1684 aa12.88□□□□□ -0.35
TMEM258-201ENST00000257262 STRCQ7RTU9 1775 aa12.88□□□□□ -0.35
TMEM258-201ENST00000257262 NAIPQ13075 1403 aa12.87□□□□□ -0.35
TMEM258-201ENST00000257262 ERVK-7P63135 1459 aa12.86□□□□□ -0.35
TMEM258-201ENST00000257262 A2ML1A8K2U0 1454 aa12.85□□□□□ -0.35
TMEM258-201ENST00000257262 EFCAB6Q5THR3 1501 aa12.85□□□□□ -0.35
TMEM258-201ENST00000257262 ZBTB22O15209 634 aa12.85□□□□□ -0.35
TMEM258-201ENST00000257262 TET3O43151 1660 aa12.85□□□□□ -0.35
TMEM258-201ENST00000257262 IQGAP3Q86VI3 1631 aa12.84□□□□□ -0.35
TMEM258-201ENST00000257262 NUP155O75694 1391 aa12.84□□□□□ -0.35
TMEM258-201ENST00000257262 NLRP1Q9C000 1473 aa12.84□□□□□ -0.35
TMEM258-201ENST00000257262 HFM1A2PYH4 1435 aa12.83□□□□□ -0.36
TMEM258-201ENST00000257262 E9PCH4 1651 aa12.83□□□□□ -0.36
TMEM258-201ENST00000257262 UGGT1Q9NYU2 1555 aa12.82□□□□□ -0.36
TMEM258-201ENST00000257262 NCKAP5LQ9HCH0 1330 aa12.82□□□□□ -0.36
TMEM258-201ENST00000257262 THEMISQ8N1K5 641 aaPredicted RBP12.81□□□□□ -0.36
TMEM258-201ENST00000257262 RPRD2Q5VT52 1461 aaKnown RBP12.8□□□□□ -0.36
TMEM258-201ENST00000257262 UBR1Q8IWV7 1749 aa12.8□□□□□ -0.36
TMEM258-201ENST00000257262 SYNMO15061 1565 aa12.8□□□□□ -0.36
TMEM258-201ENST00000257262 PIK3C2BO00750 1634 aa12.8□□□□□ -0.36
TMEM258-201ENST00000257262 NOS1P29475 1434 aa12.79□□□□□ -0.36
TMEM258-201ENST00000257262 PLA2R1Q13018 1463 aa12.79□□□□□ -0.36
TMEM258-201ENST00000257262 TRIM52Q96A61 297 aa12.79□□□□□ -0.36
TMEM258-201ENST00000257262 IDI1Q13907 227 aa12.78□□□□□ -0.36
TMEM258-201ENST00000257262 POLR1AO95602 1720 aaPredicted RBP12.77□□□□□ -0.36
TMEM258-201ENST00000257262 PKD2Q13563 968 aa12.77□□□□□ -0.37
TMEM258-201ENST00000257262 PTPRTO14522 1441 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms