RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 HECW2Q9P2P5 1572 aa21.26■□□□□ 0.99
CCDC47-201ENST00000225726 MLH3Q9UHC1 1453 aa21.26■□□□□ 0.99
CCDC47-201ENST00000225726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.26■□□□□ 0.992e-7■■□□□ 13.9
CCDC47-201ENST00000225726 DHX29Q7Z478 1369 aaKnown RBP21.26■□□□□ 0.99
CCDC47-201ENST00000225726 MYT1LQ9UL68 1186 aa21.24■□□□□ 0.99
CCDC47-201ENST00000225726 VWDEQ8N2E2 1590 aa21.2■□□□□ 0.98
CCDC47-201ENST00000225726 RICTORQ6R327 1708 aa21.2■□□□□ 0.98
CCDC47-201ENST00000225726 PRDM15P57071 1507 aaPredicted RBP21.19■□□□□ 0.98
CCDC47-201ENST00000225726 FAM69CQ0P6D2 419 aa21.19■□□□□ 0.98
CCDC47-201ENST00000225726 A2MP01023 1474 aa21.19■□□□□ 0.98
CCDC47-201ENST00000225726 ATP10AO60312 1499 aa21.18■□□□□ 0.98
CCDC47-201ENST00000225726 TET3O43151 1660 aa21.18■□□□□ 0.98
CCDC47-201ENST00000225726 MROH1Q8NDA8 1641 aa21.17■□□□□ 0.98
CCDC47-201ENST00000225726 KANK1Q14678 1352 aa21.17■□□□□ 0.98
CCDC47-201ENST00000225726 ABCA6Q8N139 1617 aa21.17■□□□□ 0.98
CCDC47-201ENST00000225726 PLA2R1Q13018 1463 aa21.17■□□□□ 0.98
CCDC47-201ENST00000225726 PPRC1Q5VV67 1664 aaKnown RBP21.16■□□□□ 0.98
CCDC47-201ENST00000225726 RNF17Q9BXT8 1623 aaKnown RBP21.16■□□□□ 0.98
CCDC47-201ENST00000225726 E9PCH4 1651 aa21.16■□□□□ 0.98
CCDC47-201ENST00000225726 CCDC144AA2RUR9 1427 aa21.16■□□□□ 0.98
CCDC47-201ENST00000225726 BCORL1Q5H9F3 1711 aa21.16■□□□□ 0.98
CCDC47-201ENST00000225726 FRMPD1Q5SYB0 1578 aa21.15■□□□□ 0.98
CCDC47-201ENST00000225726 KIF3BO15066 747 aa21.14■□□□□ 0.98
CCDC47-201ENST00000225726 NBPF8Q3BBV2 869 aa21.12■□□□□ 0.97
CCDC47-201ENST00000225726 RAPGEF3O95398 923 aa21.12■□□□□ 0.97
CCDC47-201ENST00000225726 TSPOAP1O95153 1857 aa21.12■□□□□ 0.97
CCDC47-201ENST00000225726 DIP2CQ9Y2E4 1556 aa21.12■□□□□ 0.97
CCDC47-201ENST00000225726 KIF13AQ9H1H9 1805 aa21.11■□□□□ 0.97
CCDC47-201ENST00000225726 UHRF1BP1Q6BDS2 1440 aa21.11■□□□□ 0.97
CCDC47-201ENST00000225726 ZMYM4Q5VZL5 1548 aa21.1■□□□□ 0.97
CCDC47-201ENST00000225726 SPHKAPQ2M3C7 1700 aa21.09■□□□□ 0.97
CCDC47-201ENST00000225726 LMTK2Q8IWU2 1503 aa21.09■□□□□ 0.97
CCDC47-201ENST00000225726 TRPM2O94759 1503 aa21.08■□□□□ 0.97
CCDC47-201ENST00000225726 PTPRTO14522 1441 aa21.07■□□□□ 0.96
CCDC47-201ENST00000225726 EFCAB6Q5THR3 1501 aa21.06■□□□□ 0.96
CCDC47-201ENST00000225726 EIF4G2P78344 907 aaKnown RBP eCLIP21.05■□□□□ 0.96
CCDC47-201ENST00000225726 HIRIP3Q9BW71 556 aaPredicted RBP21.05■□□□□ 0.96
CCDC47-201ENST00000225726 CEP152O94986 1710 aa21.04■□□□□ 0.96
CCDC47-201ENST00000225726 HSPA5P11021 654 aaKnown RBP21.04■□□□□ 0.96
CCDC47-201ENST00000225726 MIER1Q8N108 512 aa21.03■□□□□ 0.96
CCDC47-201ENST00000225726 RALGAPBQ86X10 1494 aa21.03■□□□□ 0.96
CCDC47-201ENST00000225726 YEATS2Q9ULM3 1422 aa21.01■□□□□ 0.95
CCDC47-201ENST00000225726 CLTCL1P53675 1640 aa21■□□□□ 0.95
CCDC47-201ENST00000225726 DCAF11Q8TEB1 546 aa21■□□□□ 0.95
CCDC47-201ENST00000225726 SPATA31E1Q6ZUB1 1445 aa20.98■□□□□ 0.95
CCDC47-201ENST00000225726 ZNF326Q5BKZ1 582 aaKnown RBP20.98■□□□□ 0.95
CCDC47-201ENST00000225726 SCAF1Q9H7N4 1312 aaKnown RBP20.98■□□□□ 0.95
CCDC47-201ENST00000225726 ABCC3O15438 1527 aa20.97■□□□□ 0.95
CCDC47-201ENST00000225726 NEURL4Q96JN8 1562 aa20.96■□□□□ 0.95
CCDC47-201ENST00000225726 PRAG1Q86YV5 1406 aa20.96■□□□□ 0.95
CCDC47-201ENST00000225726 KDM2AQ9Y2K7 1162 aa20.96■□□□□ 0.95
CCDC47-201ENST00000225726 ZC3H13Q5T200 1668 aaKnown RBP20.95■□□□□ 0.94
CCDC47-201ENST00000225726 REREQ9P2R6 1566 aa20.95■□□□□ 0.94
CCDC47-201ENST00000225726 DDX10Q13206 875 aaKnown RBP20.95■□□□□ 0.94
CCDC47-201ENST00000225726 TRPM1Q7Z4N2 1603 aa20.94■□□□□ 0.94
CCDC47-201ENST00000225726 GGT6Q6P531 493 aa20.94■□□□□ 0.94
CCDC47-201ENST00000225726 RGL3Q3MIN7 710 aa20.94■□□□□ 0.94
CCDC47-201ENST00000225726 CAMSAP1Q5T5Y3 1602 aa20.94■□□□□ 0.94
CCDC47-201ENST00000225726 POLR1AO95602 1720 aaPredicted RBP20.92■□□□□ 0.94
CCDC47-201ENST00000225726 USP47Q96K76 1375 aa20.9■□□□□ 0.94
CCDC47-201ENST00000225726 NPATQ14207 1427 aa20.9■□□□□ 0.94
CCDC47-201ENST00000225726 WASHC2CQ9Y4E1 1318 aa20.9■□□□□ 0.94
CCDC47-201ENST00000225726 KIF1BO60333 1816 aa20.89■□□□□ 0.94
CCDC47-201ENST00000225726 LAMC1P11047 1609 aa20.88■□□□□ 0.93
CCDC47-201ENST00000225726 AGLP35573 1532 aa20.88■□□□□ 0.93
CCDC47-201ENST00000225726 WASHC2AQ641Q2 1341 aa20.87■□□□□ 0.93
CCDC47-201ENST00000225726 STAC3Q96MF2 364 aa20.87■□□□□ 0.93
CCDC47-201ENST00000225726 CNTLNQ9NXG0 1405 aa20.87■□□□□ 0.93
CCDC47-201ENST00000225726 CARD11Q9BXL7 1154 aa20.87■□□□□ 0.93
CCDC47-201ENST00000225726 COL17A1Q9UMD9 1497 aaPredicted RBP20.87■□□□□ 0.93
CCDC47-201ENST00000225726 ARHGEF40Q8TER5 1519 aa20.87■□□□□ 0.93
CCDC47-201ENST00000225726 UGGT1Q9NYU2 1555 aa20.86■□□□□ 0.93
CCDC47-201ENST00000225726 ROCK2O75116 1388 aaKnown RBP20.86■□□□□ 0.93
CCDC47-201ENST00000225726 ARHGAP31Q2M1Z3 1444 aa20.86■□□□□ 0.93
CCDC47-201ENST00000225726 MADDQ8WXG6 1647 aa20.85■□□□□ 0.93
CCDC47-201ENST00000225726 GPRASP1Q5JY77 1395 aa20.85■□□□□ 0.93
CCDC47-201ENST00000225726 CCDC7Q96M83 1385 aa20.85■□□□□ 0.93
CCDC47-201ENST00000225726 SIGLEC1Q9BZZ2 1709 aa20.82■□□□□ 0.92
CCDC47-201ENST00000225726 MROH2AA6NES4 1674 aa20.82■□□□□ 0.92
CCDC47-201ENST00000225726 NOS1P29475 1434 aa20.82■□□□□ 0.92
CCDC47-201ENST00000225726 ADGRB3O60242 1522 aa20.82■□□□□ 0.92
CCDC47-201ENST00000225726 IFT172Q9UG01 1749 aa20.81■□□□□ 0.92
CCDC47-201ENST00000225726 C11orf95C9JLR9 678 aaPredicted RBP20.8■□□□□ 0.92
CCDC47-201ENST00000225726 CFAP65Q6ZU64 1925 aaKnown RBP20.79■□□□□ 0.92
CCDC47-201ENST00000225726 MYOM2P54296 1465 aa20.79■□□□□ 0.92
CCDC47-201ENST00000225726 PIK3C2BO00750 1634 aa20.79■□□□□ 0.92
CCDC47-201ENST00000225726 SYNMO15061 1565 aa20.78■□□□□ 0.92
CCDC47-201ENST00000225726 PPP6R1Q9UPN7 881 aa20.78■□□□□ 0.92
CCDC47-201ENST00000225726 KIF7Q2M1P5 1343 aa20.77■□□□□ 0.92
CCDC47-201ENST00000225726 KIAA1210Q9ULL0 1709 aa20.77■□□□□ 0.92
CCDC47-201ENST00000225726 ARID4BQ4LE39 1312 aaPredicted RBP20.76■□□□□ 0.91
CCDC47-201ENST00000225726 NBPF1Q3BBV0 1214 aa20.76■□□□□ 0.91
CCDC47-201ENST00000225726 PREX1Q8TCU6 1659 aa20.75■□□□□ 0.91
CCDC47-201ENST00000225726 ANP32CO43423 234 aa20.74■□□□□ 0.91
CCDC47-201ENST00000225726 ST20-MTHFSA0A0A6YYL1 179 aa20.72■□□□□ 0.91
CCDC47-201ENST00000225726 PPLO60437 1756 aa20.72■□□□□ 0.91
CCDC47-201ENST00000225726 NRXN1Q9ULB1 1477 aa20.71■□□□□ 0.91
CCDC47-201ENST00000225726 CLTCQ00610 1675 aaKnown RBP20.71■□□□□ 0.91
CCDC47-201ENST00000225726 IQGAP1P46940 1657 aa20.71■□□□□ 0.91
CCDC47-201ENST00000225726 RPGRIP1LQ68CZ1 1315 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms