RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 TSPY10P0CW01 314 aa18.35■□□□□ 0.53
GABPB1-201ENST00000220429 NEFMP07197 916 aa18.34■□□□□ 0.53
GABPB1-201ENST00000220429 PKD2Q13563 968 aa18.33■□□□□ 0.53
GABPB1-201ENST00000220429 CLASP1Q7Z460 1538 aa18.33■□□□□ 0.53
GABPB1-201ENST00000220429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.32■□□□□ 0.522e-9■■■■■ 40.7
GABPB1-201ENST00000220429 CCDC141Q6ZP82 1450 aa18.32■□□□□ 0.52
GABPB1-201ENST00000220429 KIF15Q9NS87 1388 aa18.31■□□□□ 0.52
GABPB1-201ENST00000220429 KDM5DQ9BY66 1539 aa18.31■□□□□ 0.52
GABPB1-201ENST00000220429 NUP155O75694 1391 aa18.3■□□□□ 0.52
GABPB1-201ENST00000220429 B4GALNT3Q6L9W6 998 aa18.29■□□□□ 0.52
GABPB1-201ENST00000220429 MYO5CQ9NQX4 1742 aa18.28■□□□□ 0.52
GABPB1-201ENST00000220429 ARHGAP5Q13017 1502 aa18.28■□□□□ 0.52
GABPB1-201ENST00000220429 SYCP2Q9BX26 1530 aa18.28■□□□□ 0.52
GABPB1-201ENST00000220429 FAM43AQ8N2R8 423 aa18.26■□□□□ 0.51
GABPB1-201ENST00000220429 SPATA31E1Q6ZUB1 1445 aa18.26■□□□□ 0.51
GABPB1-201ENST00000220429 ZCCHC11Q5TAX3 1644 aaKnown RBP18.26■□□□□ 0.51
GABPB1-201ENST00000220429 RSPH4AQ5TD94 716 aa18.25■□□□□ 0.51
GABPB1-201ENST00000220429 POLR1AO95602 1720 aaPredicted RBP18.24■□□□□ 0.51
GABPB1-201ENST00000220429 MAST1Q9Y2H9 1570 aa18.24■□□□□ 0.51
GABPB1-201ENST00000220429 GSE1Q14687 1217 aa18.24■□□□□ 0.51
GABPB1-201ENST00000220429 CCDC7Q96M83 1385 aa18.23■□□□□ 0.51
GABPB1-201ENST00000220429 UHRF1BP1LA0JNW5 1464 aa18.22■□□□□ 0.51
GABPB1-201ENST00000220429 CNTLNQ9NXG0 1405 aa18.22■□□□□ 0.51
GABPB1-201ENST00000220429 A0A0U1RQG5 324 aaPredicted RBP18.22■□□□□ 0.51
GABPB1-201ENST00000220429 LAS1LQ9Y4W2 734 aaKnown RBP18.22■□□□□ 0.51
GABPB1-201ENST00000220429 FAM135AQ9P2D6 1515 aa18.19■□□□□ 0.5
GABPB1-201ENST00000220429 PPM1GO15355 546 aaPredicted RBP18.19■□□□□ 0.5
GABPB1-201ENST00000220429 PLEKHH2Q8IVE3 1493 aa18.18■□□□□ 0.5
GABPB1-201ENST00000220429 FGD1P98174 961 aa18.18■□□□□ 0.5
GABPB1-201ENST00000220429 ARHGEF12Q9NZN5 1544 aa18.18■□□□□ 0.5
GABPB1-201ENST00000220429 PLXNC1O60486 1568 aa18.18■□□□□ 0.5
GABPB1-201ENST00000220429 HNRNPUQ00839 825 aaKnown RBP eCLIP18.17■□□□□ 0.5
GABPB1-201ENST00000220429 RBM10P98175 930 aaKnown RBP18.17■□□□□ 0.5
GABPB1-201ENST00000220429 UNC13BO14795 1591 aa18.17■□□□□ 0.5
GABPB1-201ENST00000220429 PLCH2O75038 1416 aa18.16■□□□□ 0.5
GABPB1-201ENST00000220429 UHRF1BP1Q6BDS2 1440 aa18.16■□□□□ 0.5
GABPB1-201ENST00000220429 ZNF326Q5BKZ1 582 aaKnown RBP18.16■□□□□ 0.5
GABPB1-201ENST00000220429 KIF7Q2M1P5 1343 aa18.16■□□□□ 0.5
GABPB1-201ENST00000220429 AAMPQ13685 434 aa18.15■□□□□ 0.5
GABPB1-201ENST00000220429 PDE4CQ08493 712 aa18.15■□□□□ 0.5
GABPB1-201ENST00000220429 HSP90AA2PQ14568 343 aaPredicted RBP18.14■□□□□ 0.5
GABPB1-201ENST00000220429 KDM5CP41229 1560 aa18.14■□□□□ 0.49
GABPB1-201ENST00000220429 BCORL1Q5H9F3 1711 aa18.14■□□□□ 0.49
GABPB1-201ENST00000220429 USP47Q96K76 1375 aa18.13■□□□□ 0.49
GABPB1-201ENST00000220429 RALGAPBQ86X10 1494 aa18.12■□□□□ 0.49
GABPB1-201ENST00000220429 RRP9O43818 475 aaKnown RBP18.12■□□□□ 0.49
GABPB1-201ENST00000220429 ABCC1P33527 1531 aa18.12■□□□□ 0.49
GABPB1-201ENST00000220429 EFCAB2Q5VUJ9 269 aa18.1■□□□□ 0.49
GABPB1-201ENST00000220429 IQGAP3Q86VI3 1631 aa18.1■□□□□ 0.49
GABPB1-201ENST00000220429 DUOX2Q9NRD8 1548 aa18.1■□□□□ 0.49
GABPB1-201ENST00000220429 FRAT1Q92837 279 aaPredicted RBP18.08■□□□□ 0.49
GABPB1-201ENST00000220429 PRKRIP1Q9H875 184 aaPredicted RBP18.08■□□□□ 0.49
GABPB1-201ENST00000220429 TRAPPC8Q9Y2L5 1435 aa18.07■□□□□ 0.48
GABPB1-201ENST00000220429 PLA2R1Q13018 1463 aa18.07■□□□□ 0.48
GABPB1-201ENST00000220429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.07■□□□□ 0.487e-8■■■■□ 25
GABPB1-201ENST00000220429 MAGI2Q86UL8 1455 aa18.06■□□□□ 0.48
GABPB1-201ENST00000220429 KDM2AQ9Y2K7 1162 aa18.06■□□□□ 0.48
GABPB1-201ENST00000220429 CCDC184Q52MB2 194 aa18.06■□□□□ 0.48
GABPB1-201ENST00000220429 DCAF11Q8TEB1 546 aa18.06■□□□□ 0.48
GABPB1-201ENST00000220429 ERBINQ96RT1 1412 aa18.06■□□□□ 0.48
GABPB1-201ENST00000220429 CCDC144AA2RUR9 1427 aa18.05■□□□□ 0.48
GABPB1-201ENST00000220429 ARAP3Q8WWN8 1544 aa18.05■□□□□ 0.48
GABPB1-201ENST00000220429 CARD11Q9BXL7 1154 aa18.04■□□□□ 0.48
GABPB1-201ENST00000220429 WDR7Q9Y4E6 1490 aa18.03■□□□□ 0.48
GABPB1-201ENST00000220429 NPM2Q86SE8 214 aaKnown RBP18.01■□□□□ 0.47
GABPB1-201ENST00000220429 HSP90AA1P07900 732 aaKnown RBP18.01■□□□□ 0.47
GABPB1-201ENST00000220429 TRPM1Q7Z4N2 1603 aa18■□□□□ 0.47
GABPB1-201ENST00000220429 DHX29Q7Z478 1369 aaKnown RBP18■□□□□ 0.47
GABPB1-201ENST00000220429 ARID4BQ4LE39 1312 aaPredicted RBP18■□□□□ 0.47
GABPB1-201ENST00000220429 ZFYVE16Q7Z3T8 1539 aa17.99■□□□□ 0.47
GABPB1-201ENST00000220429 PRAG1Q86YV5 1406 aa17.99■□□□□ 0.47
GABPB1-201ENST00000220429 ABCA9Q8IUA7 1624 aa17.99■□□□□ 0.47
GABPB1-201ENST00000220429 PDIA4P13667 645 aaKnown RBP17.99■□□□□ 0.47
GABPB1-201ENST00000220429 ATP10AO60312 1499 aa17.98■□□□□ 0.47
GABPB1-201ENST00000220429 A2MP01023 1474 aa17.98■□□□□ 0.47
GABPB1-201ENST00000220429 POLR3GLQ9BT43 218 aa17.98■□□□□ 0.47
GABPB1-201ENST00000220429 SPAG9O60271 1321 aaKnown RBP17.98■□□□□ 0.47
GABPB1-201ENST00000220429 AFAP1Q8N556 730 aa17.98■□□□□ 0.47
GABPB1-201ENST00000220429 RTEL1-TNFRSF6BF6WH68 1400 aa17.97■□□□□ 0.47
GABPB1-201ENST00000220429 ROCK2O75116 1388 aaKnown RBP17.97■□□□□ 0.47
GABPB1-201ENST00000220429 RGL3Q3MIN7 710 aa17.97■□□□□ 0.47
GABPB1-201ENST00000220429 ST20-MTHFSA0A0A6YYL1 179 aa17.96■□□□□ 0.47
GABPB1-201ENST00000220429 NFKBIBQ15653 356 aa17.96■□□□□ 0.47
GABPB1-201ENST00000220429 MRS2Q9HD23 443 aa17.96■□□□□ 0.47
GABPB1-201ENST00000220429 FANCAO15360 1455 aa17.95■□□□□ 0.46
GABPB1-201ENST00000220429 RRAGDQ9NQL2 400 aaPredicted RBP17.94■□□□□ 0.46
GABPB1-201ENST00000220429 E9PCH4 1651 aa17.94■□□□□ 0.46
GABPB1-201ENST00000220429 NAP1L5Q96NT1 182 aaPredicted RBP17.93■□□□□ 0.46
GABPB1-201ENST00000220429 INO80Q9ULG1 1556 aaPredicted RBP17.93■□□□□ 0.46
GABPB1-201ENST00000220429 FAM9BQ8IZU0 186 aa17.92■□□□□ 0.46
GABPB1-201ENST00000220429 DEPDC5O75140 1603 aa17.92■□□□□ 0.46
GABPB1-201ENST00000220429 ASXL2Q76L83 1435 aa17.92■□□□□ 0.46
GABPB1-201ENST00000220429 ATP7AQ04656 1500 aa17.91■□□□□ 0.46
GABPB1-201ENST00000220429 BCL11BQ9C0K0 894 aaPredicted RBP17.91■□□□□ 0.46
GABPB1-201ENST00000220429 NBPF1Q3BBV0 1214 aa17.91■□□□□ 0.46
GABPB1-201ENST00000220429 GPRASP1Q5JY77 1395 aa17.91■□□□□ 0.46
GABPB1-201ENST00000220429 LAMC1P11047 1609 aa17.9■□□□□ 0.46
GABPB1-201ENST00000220429 ADGRL1O94910 1474 aa17.89■□□□□ 0.45
GABPB1-201ENST00000220429 EIF2AK4Q9P2K8 1649 aaKnown RBP17.88■□□□□ 0.45
GABPB1-201ENST00000220429 CNGB1Q14028 1251 aaPredicted RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms