RNA–Protein interactions for RNA: ENST00000217315.9

TM9SF4-201, Transcript of transmembrane 9 superfamily member 4, humanhuman

TSL 2 BASIC

Gene TM9SF4, Length 4,032 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-201ENST00000217315 PLIN1O60240 522 aa16.13■□□□□ 0.17
TM9SF4-201ENST00000217315 NUTM2DQ5VT03 806 aaPredicted RBP16.13■□□□□ 0.17
TM9SF4-201ENST00000217315 NUP153P49790 1475 aaKnown RBP16.13■□□□□ 0.17
TM9SF4-201ENST00000217315 PDE3BQ13370 1112 aa16.12■□□□□ 0.17
TM9SF4-201ENST00000217315 STK26Q9P289 416 aa16.12■□□□□ 0.17
TM9SF4-201ENST00000217315 MAGI1Q96QZ7 1491 aaPredicted RBP16.11■□□□□ 0.17
TM9SF4-201ENST00000217315 POGKQ9P215 609 aa16.11■□□□□ 0.17
TM9SF4-201ENST00000217315 EXOC6Q8TAG9 804 aa16.11■□□□□ 0.17
TM9SF4-201ENST00000217315 PNISRQ8TF01 805 aaKnown RBP16.1■□□□□ 0.17
TM9SF4-201ENST00000217315 TRAK1Q9UPV9 953 aa16.1■□□□□ 0.17
TM9SF4-201ENST00000217315 UPF2Q9HAU5 1272 aaKnown RBP16.1■□□□□ 0.17
TM9SF4-201ENST00000217315 KIF21AQ7Z4S6 1674 aa16.1■□□□□ 0.17
TM9SF4-201ENST00000217315 GPATCH8Q9UKJ3 1502 aaKnown RBP16.09■□□□□ 0.17
TM9SF4-201ENST00000217315 U2SURPO15042 1029 aaKnown RBP16.09■□□□□ 0.17
TM9SF4-201ENST00000217315 LAS1LQ9Y4W2 734 aaKnown RBP16.09■□□□□ 0.17
TM9SF4-201ENST00000217315 RRP1P56182 461 aaKnown RBP16.08■□□□□ 0.17
TM9SF4-201ENST00000217315 SRPK2P78362 688 aaKnown RBP16.08■□□□□ 0.16
TM9SF4-201ENST00000217315 ABCA5Q8WWZ7 1642 aa16.08■□□□□ 0.16
TM9SF4-201ENST00000217315 GOLGA2Q08379 1002 aa16.08■□□□□ 0.16
TM9SF4-201ENST00000217315 TCOF1Q13428 1488 aaKnown RBP16.07■□□□□ 0.16
TM9SF4-201ENST00000217315 EIF3AQ14152 1382 aaKnown RBP16.07■□□□□ 0.16
TM9SF4-201ENST00000217315 WASHC2CQ9Y4E1 1318 aa16.07■□□□□ 0.16
TM9SF4-201ENST00000217315 ADAMTS12P58397 1594 aa16.06■□□□□ 0.16
TM9SF4-201ENST00000217315 WDR62O43379 1518 aa16.05■□□□□ 0.16
TM9SF4-201ENST00000217315 CDCA7LQ96GN5 454 aa16.05■□□□□ 0.16
TM9SF4-201ENST00000217315 MAGI3Q5TCQ9 1506 aa16.05■□□□□ 0.16
TM9SF4-201ENST00000217315 BRD4O60885 1362 aaPredicted RBP16.05■□□□□ 0.16
TM9SF4-201ENST00000217315 SAMD9Q5K651 1589 aa16.04■□□□□ 0.16
TM9SF4-201ENST00000217315 MLECQ14165 292 aa16.04■□□□□ 0.16
TM9SF4-201ENST00000217315 TCERG1O14776 1098 aaKnown RBP16.03■□□□□ 0.16
TM9SF4-201ENST00000217315 DDRGK1Q96HY6 314 aa16.03■□□□□ 0.16
TM9SF4-201ENST00000217315 RAPGEF6Q8TEU7 1601 aa16.03■□□□□ 0.16
TM9SF4-201ENST00000217315 MAPK8IP3Q9UPT6 1336 aa16.02■□□□□ 0.16
TM9SF4-201ENST00000217315 FTSJ3Q8IY81 847 aaKnown RBP16.02■□□□□ 0.15
TM9SF4-201ENST00000217315 U2AF1L5P0DN76 240 aaPredicted RBP16.01■□□□□ 0.15
TM9SF4-201ENST00000217315 U2AF1Q01081 240 aaKnown RBP eCLIP16.01■□□□□ 0.15
TM9SF4-201ENST00000217315 APAF1O14727 1248 aa16.01■□□□□ 0.15
TM9SF4-201ENST00000217315 CCDC141Q6ZP82 1450 aa16■□□□□ 0.15
TM9SF4-201ENST00000217315 CFAP70Q5T0N1 1121 aa16■□□□□ 0.15
TM9SF4-201ENST00000217315 ADAMTS8Q9UP79 889 aa16■□□□□ 0.15
TM9SF4-201ENST00000217315 ATP10BO94823 1461 aa16■□□□□ 0.15
TM9SF4-201ENST00000217315 KIAA0556O60303 1618 aa15.99■□□□□ 0.15
TM9SF4-201ENST00000217315 DISP1Q96F81 1524 aa15.99■□□□□ 0.15
TM9SF4-201ENST00000217315 CRBNQ96SW2 442 aa15.99■□□□□ 0.15
TM9SF4-201ENST00000217315 FANCIQ9NVI1 1328 aa15.99■□□□□ 0.15
TM9SF4-201ENST00000217315 RRP7AQ9Y3A4 280 aaKnown RBP15.98■□□□□ 0.15
TM9SF4-201ENST00000217315 KIF14Q15058 1648 aa15.98■□□□□ 0.15
TM9SF4-201ENST00000217315 IPO9Q96P70 1041 aaKnown RBP15.97■□□□□ 0.15
TM9SF4-201ENST00000217315 TARBP1Q13395 1621 aaKnown RBP15.95■□□□□ 0.14
TM9SF4-201ENST00000217315 SCAPERQ9BY12 1400 aa15.94■□□□□ 0.14
TM9SF4-201ENST00000217315 TMEM132EQ6IEE7 984 aa15.94■□□□□ 0.14
TM9SF4-201ENST00000217315 HSP90AA1P07900 732 aaKnown RBP15.93■□□□□ 0.14
TM9SF4-201ENST00000217315 PLEKHH2Q8IVE3 1493 aa15.93■□□□□ 0.14
TM9SF4-201ENST00000217315 SMG6Q86US8 1419 aaKnown RBP15.93■□□□□ 0.14
TM9SF4-201ENST00000217315 PDE4AP27815 886 aa15.93■□□□□ 0.14
TM9SF4-201ENST00000217315 CLUAP1Q96AJ1 413 aa15.93■□□□□ 0.14
TM9SF4-201ENST00000217315 PPP2R1AP30153 589 aa15.92■□□□□ 0.14
TM9SF4-201ENST00000217315 STAC3Q96MF2 364 aa15.92■□□□□ 0.14
TM9SF4-201ENST00000217315 PBRM1Q86U86 1689 aa15.92■□□□□ 0.14
TM9SF4-201ENST00000217315 OSCARQ8IYS5 282 aa15.92■□□□□ 0.14
TM9SF4-201ENST00000217315 DEKP35659 375 aaKnown RBP15.91■□□□□ 0.14
TM9SF4-201ENST00000217315 ERBINQ96RT1 1412 aa15.91■□□□□ 0.14
TM9SF4-201ENST00000217315 ARXQ96QS3 562 aa15.91■□□□□ 0.14
TM9SF4-201ENST00000217315 CENPJQ9HC77 1338 aaPredicted RBP15.9■□□□□ 0.14
TM9SF4-201ENST00000217315 BCL2L13Q9BXK5 485 aa15.9■□□□□ 0.14
TM9SF4-201ENST00000217315 EIF4G3O43432 1585 aaKnown RBP15.9■□□□□ 0.14
TM9SF4-201ENST00000217315 PZPP20742 1482 aa15.9■□□□□ 0.14
TM9SF4-201ENST00000217315 BECN1Q14457 450 aa15.89■□□□□ 0.13
TM9SF4-201ENST00000217315 VGFO15240 615 aaPredicted RBP15.89■□□□□ 0.13
TM9SF4-201ENST00000217315 HDGFL2Q7Z4V5 671 aaPredicted RBP15.88■□□□□ 0.13
TM9SF4-201ENST00000217315 KDM6BO15054 1643 aa15.87■□□□□ 0.13
TM9SF4-201ENST00000217315 DNMT1P26358 1616 aaKnown RBP15.87■□□□□ 0.13
TM9SF4-201ENST00000217315 CYB5RLQ6IPT4 315 aa15.87■□□□□ 0.13
TM9SF4-201ENST00000217315 E9PSI1 815 aa15.86■□□□□ 0.13
TM9SF4-201ENST00000217315 SOX12O15370 315 aa15.86■□□□□ 0.13
TM9SF4-201ENST00000217315 PLEKHG5O94827 1062 aa15.86■□□□□ 0.13
TM9SF4-201ENST00000217315 MYH16Q9H6N6 1097 aa15.85■□□□□ 0.13
TM9SF4-201ENST00000217315 CGNL1Q0VF96 1302 aa15.85■□□□□ 0.13
TM9SF4-201ENST00000217315 TEX14Q8IWB6 1497 aa15.85■□□□□ 0.13
TM9SF4-201ENST00000217315 TERF2IPQ9NYB0 399 aa15.85■□□□□ 0.13
TM9SF4-201ENST00000217315 MINK1Q8N4C8 1332 aaPredicted RBP15.85■□□□□ 0.13
TM9SF4-201ENST00000217315 COG6Q9Y2V7 657 aa15.84■□□□□ 0.13
TM9SF4-201ENST00000217315 ITSN2Q9NZM3 1697 aa15.84■□□□□ 0.13
TM9SF4-201ENST00000217315 EVC2Q86UK5 1308 aa15.84■□□□□ 0.13
TM9SF4-201ENST00000217315 CENPQQ7L2Z9 268 aaPredicted RBP15.84■□□□□ 0.13
TM9SF4-201ENST00000217315 SLC12A5Q9H2X9 1139 aa15.84■□□□□ 0.13
TM9SF4-201ENST00000217315 MS4A1P11836 297 aa15.83■□□□□ 0.12
TM9SF4-201ENST00000217315 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.83■□□□□ 0.123e-6■■□□□ 14
TM9SF4-201ENST00000217315 C14orf37Q86TY3 774 aa15.83■□□□□ 0.12
TM9SF4-201ENST00000217315 NUP160Q12769 1436 aa15.82■□□□□ 0.12
TM9SF4-201ENST00000217315 PNNQ9H307 717 aaKnown RBP15.82■□□□□ 0.12
TM9SF4-201ENST00000217315 DISP3Q9P2K9 1392 aa15.82■□□□□ 0.12
TM9SF4-201ENST00000217315 SMC4Q9NTJ3 1288 aa15.82■□□□□ 0.12
TM9SF4-201ENST00000217315 RALGAPBQ86X10 1494 aa15.82■□□□□ 0.12
TM9SF4-201ENST00000217315 SLC4A3P48751 1232 aa15.81■□□□□ 0.12
TM9SF4-201ENST00000217315 MSH5O43196 834 aa15.8■□□□□ 0.12
TM9SF4-201ENST00000217315 CABP2Q9NPB3 220 aa15.8■□□□□ 0.12
TM9SF4-201ENST00000217315 DHX29Q7Z478 1369 aaKnown RBP15.8■□□□□ 0.12
TM9SF4-201ENST00000217315 ITPRIPQ8IWB1 547 aa15.8■□□□□ 0.12
TM9SF4-201ENST00000217315 RAPGEF3O95398 923 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms