RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C MAS1P10507 462 aa1.33□□□□□ -2.2
RTR1YER139C CKI1P20485 582 aa1.33□□□□□ -2.2
RTR1YER139C MIR1P23641 311 aaKnown RBP1.33□□□□□ -2.2
RTR1YER139C MSP1P28737 362 aa1.33□□□□□ -2.2
RTR1YER139C PMT2P31382 759 aa1.33□□□□□ -2.2
RTR1YER139C VPH1P32563 840 aaKnown RBP1.33□□□□□ -2.2
RTR1YER139C VAM7P32912 316 aa1.33□□□□□ -2.2
RTR1YER139C DAD2P36162 133 aa1.33□□□□□ -2.2
RTR1YER139C YPT35P38815 214 aaKnown RBP1.33□□□□□ -2.2
RTR1YER139C RBG1P39729 369 aa1.33□□□□□ -2.2
RTR1YER139C YJL144WP47009 104 aa1.33□□□□□ -2.2
RTR1YER139C YGR015CP53208 328 aa1.33□□□□□ -2.2
RTR1YER139C LST7P53237 242 aa1.33□□□□□ -2.2
RTR1YER139C YNR068CP53754 272 aa1.33□□□□□ -2.2
RTR1YER139C RMI1Q02685 241 aa1.33□□□□□ -2.2
RTR1YER139C SMP3Q04174 516 aa1.33□□□□□ -2.2
RTR1YER139C YMR310CQ04867 317 aaPredicted RBP1.33□□□□□ -2.2
RTR1YER139C YOR012WQ12351 137 aa1.33□□□□□ -2.2
RTR1YER139C UBA3Q99344 299 aa1.33□□□□□ -2.2
RTR1YER139C STF1P01098 86 aa1.32□□□□□ -2.2
RTR1YER139C THR4P16120 514 aaKnown RBP1.32□□□□□ -2.2
RTR1YER139C PHO84P25297 587 aaKnown RBP1.32□□□□□ -2.2
RTR1YER139C ZIP1P31111 875 aa1.32□□□□□ -2.2
RTR1YER139C LAS1P36146 502 aaPredicted RBP1.32□□□□□ -2.2
RTR1YER139C ATG7P38862 630 aa1.32□□□□□ -2.2
RTR1YER139C RRT13P40042 185 aa1.32□□□□□ -2.2
RTR1YER139C YIR035CP40579 254 aa1.32□□□□□ -2.2
RTR1YER139C YNL320WP42840 284 aa1.32□□□□□ -2.2
RTR1YER139C COQ5P49017 307 aa1.32□□□□□ -2.2
RTR1YER139C UTP6Q02354 440 aaKnown RBP1.32□□□□□ -2.2
RTR1YER139C TRM82Q03774 444 aa1.32□□□□□ -2.2
RTR1YER139C ARR1Q06596 294 aa1.32□□□□□ -2.2
RTR1YER139C YPR078CQ06813 372 aa1.32□□□□□ -2.2
RTR1YER139C APC5Q08683 685 aa1.32□□□□□ -2.2
RTR1YER139C FRE8Q12209 686 aa1.32□□□□□ -2.2
RTR1YER139C SKS1Q12505 502 aa1.32□□□□□ -2.2
RTR1YER139C STE2D6VTK4 431 aa1.31□□□□□ -2.2
RTR1YER139C STE3P06783 470 aa1.31□□□□□ -2.2
RTR1YER139C RPS16AP0CX51 143 aaKnown RBP1.31□□□□□ -2.2
RTR1YER139C RPS16BP0CX52 143 aaKnown RBP1.31□□□□□ -2.2
RTR1YER139C ARF2P19146 181 aaKnown RBP1.31□□□□□ -2.2
RTR1YER139C FAR1P21268 830 aa1.31□□□□□ -2.2
RTR1YER139C RDS1P25611 832 aa1.31□□□□□ -2.2
RTR1YER139C URA10P30402 227 aa1.31□□□□□ -2.2
RTR1YER139C HMX1P32339 317 aa1.31□□□□□ -2.2
RTR1YER139C MKK1P32490 508 aa1.31□□□□□ -2.2
RTR1YER139C SPS19P32573 292 aaKnown RBP1.31□□□□□ -2.2
RTR1YER139C CBF5P33322 483 aaKnown RBP RIP-Chip data1.31□□□□□ -2.2not detected
RTR1YER139C SHE1P38200 338 aa1.31□□□□□ -2.2
RTR1YER139C SHE3P38272 425 aaKnown RBP1.31□□□□□ -2.2
RTR1YER139C LCP5P40079 357 aaPredicted RBP1.31□□□□□ -2.2
RTR1YER139C MOB2P43563 287 aa1.31□□□□□ -2.2
RTR1YER139C RPA34P47006 233 aaPredicted RBP1.31□□□□□ -2.2
RTR1YER139C YNL143CP53908 130 aa1.31□□□□□ -2.2
RTR1YER139C NAT4Q04751 285 aa1.31□□□□□ -2.2
RTR1YER139C MRX8Q05473 314 aa1.31□□□□□ -2.2
RTR1YER139C YOL029CQ08187 201 aa1.31□□□□□ -2.2
RTR1YER139C DDC1Q08949 612 aa1.31□□□□□ -2.2
RTR1YER139C AIM45Q12480 344 aaKnown RBP1.31□□□□□ -2.2
RTR1YER139C HSP82P02829 709 aaKnown RBP1.3□□□□□ -2.2
RTR1YER139C BGL2P15703 313 aaKnown RBP1.3□□□□□ -2.2
RTR1YER139C SAG1P20840 650 aa1.3□□□□□ -2.2
RTR1YER139C HXT2P23585 541 aa1.3□□□□□ -2.2
RTR1YER139C GRR1P24814 1151 aa1.3□□□□□ -2.2
RTR1YER139C MXR2P25566 168 aa1.3□□□□□ -2.2
RTR1YER139C MRPS5P33759 307 aa1.3□□□□□ -2.2
RTR1YER139C YKL071WP36086 256 aa1.3□□□□□ -2.2
RTR1YER139C ADH5P38113 351 aaKnown RBP1.3□□□□□ -2.2
RTR1YER139C PCH2P38126 564 aa1.3□□□□□ -2.2
RTR1YER139C IML3P38265 245 aa1.3□□□□□ -2.2
RTR1YER139C GGC1P38988 300 aa1.3□□□□□ -2.2
RTR1YER139C HIT1P46973 164 aa1.3□□□□□ -2.2
RTR1YER139C YHC3P47040 408 aa1.3□□□□□ -2.2
RTR1YER139C HST4P53688 370 aa1.3□□□□□ -2.2
RTR1YER139C NRM1P53718 249 aa1.3□□□□□ -2.2
RTR1YER139C AQR1P53943 586 aa1.3□□□□□ -2.2
RTR1YER139C SUR7P54003 302 aa1.3□□□□□ -2.2
RTR1YER139C API2Q04413 109 aa1.3□□□□□ -2.2
RTR1YER139C SLM3Q12093 417 aa1.3□□□□□ -2.2
RTR1YER139C NFI1Q12216 726 aa1.3□□□□□ -2.2
RTR1YER139C SFG1Q12507 346 aa1.3□□□□□ -2.2
RTR1YER139C YAL067W-AQ8TGK6 75 aa1.3□□□□□ -2.2
RTR1YER139C FLO11P08640 1367 aa1.3□□□□□ -2.2
RTR1YER139C AUS1Q08409 1394 aa1.3□□□□□ -2.2
RTR1YER139C YPR096CO13587 100 aa1.29□□□□□ -2.2
RTR1YER139C YLL053CP0CD98 152 aa1.29□□□□□ -2.2
RTR1YER139C FUS3P16892 353 aaKnown RBP1.29□□□□□ -2.2
RTR1YER139C UTR1P21373 530 aa1.29□□□□□ -2.2
RTR1YER139C TRX1P22217 103 aaKnown RBP1.29□□□□□ -2.2
RTR1YER139C AST1P35183 429 aa1.29□□□□□ -2.2
RTR1YER139C DBP7P36120 742 aaKnown RBP1.29□□□□□ -2.2
RTR1YER139C IST2P38250 946 aa1.29□□□□□ -2.2
RTR1YER139C TAE1P38340 232 aa1.29□□□□□ -2.2
RTR1YER139C YGP1P38616 354 aaKnown RBP1.29□□□□□ -2.2
RTR1YER139C APE4P38821 490 aa1.29□□□□□ -2.2
RTR1YER139C POP2P39008 433 aa1.29□□□□□ -2.2
RTR1YER139C EFM3P47163 339 aa1.29□□□□□ -2.2
RTR1YER139C CUE3P53137 624 aaKnown RBP1.29□□□□□ -2.2
RTR1YER139C LSG1P53145 640 aaKnown RBP1.29□□□□□ -2.2
RTR1YER139C PRM1P53835 661 aa1.29□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms