RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PSMA7O14818 248 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 YY1P25490 414 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 HNMTP50135 292 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 MMEL1Q495T6 779 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 NUTM2GQ5VZR2 741 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 HDDC2Q7Z4H3 204 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 ALDH16A1Q8IZ83 802 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP18Q8N392 663 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 EFHD2Q96C19 240 aaPredicted RBP2.96□□□□□ -1.93
SCN1A-219ENST00000641575 NLRP4Q96MN2 994 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 PACSIN1Q9BY11 444 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 C1orf115Q9H7X2 142 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 PIM2Q9P1W9 311 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 VTI1BQ9UEU0 232 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 ANAPC2Q9UJX6 822 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 L1RE1Q9UN81 338 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 ARHGAP5Q13017 1502 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 TK2O00142 265 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 PPIP5K2O43314 1243 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 HNRNPRO43390 633 aaKnown RBP2.96□□□□□ -1.93
SCN1A-219ENST00000641575 MTRF1O75570 445 aaKnown RBP2.96□□□□□ -1.93
SCN1A-219ENST00000641575 HLA-DPA1P20036 260 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 GTF2E2P29084 291 aaKnown RBP2.96□□□□□ -1.93
SCN1A-219ENST00000641575 ADCY8P40145 1251 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 SLC10A5Q5PT55 438 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 SPATA2LQ8IUW3 424 aaPredicted RBP2.96□□□□□ -1.93
SCN1A-219ENST00000641575 FANCBQ8NB91 859 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 SECISBP2Q96T21 854 aaKnown RBP2.96□□□□□ -1.93
SCN1A-219ENST00000641575 NOP53Q9NZM5 478 aaKnown RBP2.96□□□□□ -1.93
SCN1A-219ENST00000641575 USF3Q68DE3 2245 aa2.96□□□□□ -1.93
SCN1A-219ENST00000641575 PCDH11XQ9BZA7 1347 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PCDH11YQ9BZA8 1340 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 IGF1RP08069 1367 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 EIF2S1P05198 315 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 GCLCP48506 637 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 STAT2P52630 851 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 AP1S2P56377 157 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CUL4AQ13619 759 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL40Q2TBA0 621 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 KRT28Q7Z3Y7 464 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 FERMT3Q86UX7 667 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 C7orf31Q8N865 590 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 OMA1Q96E52 524 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 MED10Q9BTT4 135 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CAPS2Q9BXY5 557 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM15Q9C019 465 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CACNA2D2Q9NY47 1150 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SUCLA2Q9P2R7 463 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 USP18Q9UMW8 372 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM17Q9Y577 477 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PSDA5PKW4 1024 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 BIRC5O15392 142 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 FESP07332 822 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TNFAIP2Q03169 654 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SEMA3FQ13275 785 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CHD1LQ86WJ1 897 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ANKRD44Q8N8A2 993 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SNX29Q8TEQ0 813 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SLC32A1Q9H598 525 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SFMBT1Q9UHJ3 866 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SYCE1LA8MT33 242 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NDUFB5O43674 189 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CPA1P15085 419 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CASP14P31944 242 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 GRK3P35626 688 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 RAD23BP54727 409 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NCALDP61601 193 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 VSTM1Q6UX27 236 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SESTD1Q86VW0 696 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 FCHSD1Q86WN1 690 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TMEM87BQ96K49 555 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 IDI2Q9BXS1 227 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PDGFDQ9GZP0 370 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 HMX1Q9NP08 348 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TMA7Q9Y2S6 64 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TTLL3Q9Y4R7 772 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 MRC2Q9UBG0 1479 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CTTNBP2Q8WZ74 1663 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 A6NJR5 290 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 AKR1B15C9JRZ8 316 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 H3BRJ5 948 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 PDHA1P08559 390 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 HPGDP15428 266 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SLC9A1P19634 815 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 MSR1P21757 451 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 SF3B4Q15427 424 aaKnown RBP eCLIP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 ATP13A4Q4VNC1 1196 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NXNQ6DKJ4 435 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 OLFML1Q6UWY5 402 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC186Q7Z3E2 898 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CDH24Q86UP0 819 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM59Q8IWR1 403 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 GDAP1Q8TB36 358 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 LZTS2Q9BRK4 669 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 RAB17Q9H0T7 212 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 CNOT10Q9H9A5 744 aaKnown RBP2.96□□□□□ -1.94
SCN1A-219ENST00000641575 VPS51Q9UID3 782 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 STRIP2Q9ULQ0 834 aa2.96□□□□□ -1.94
SCN1A-219ENST00000641575 NOB1Q9ULX3 412 aaKnown RBP2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms