RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ASIC2Q16515 512 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 COLEC12Q5KU26 742 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 BZW1Q7L1Q6 419 aaKnown RBP5.4□□□□□ -1.54
SCN1A-218ENST00000640036 GAKO14976 1311 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 ATP1A1P05023 1023 aaKnown RBP5.4□□□□□ -1.54
SCN1A-218ENST00000640036 PAX3P23760 479 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 PRELPP51888 382 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 DAB2P98082 770 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 UBXN1Q04323 297 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF484Q5JVG2 852 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 EFCAB12Q6NXP0 572 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 TOGARAM2Q6ZUX3 1019 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF365Q70YC5 407 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 RIN2Q8WYP3 895 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-218ENST00000640036 AKT1S1Q96B36 256 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 FAM227BQ96M60 508 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 NUP58Q9BVL2 599 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 JADE2Q9NQC1 790 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 CLDND1Q9NY35 253 aa5.4□□□□□ -1.54
SCN1A-218ENST00000640036 CKBP12277 381 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 SYN1P17600 705 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PMLP29590 882 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 MRE11P49959 708 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 C21orf59P57076 290 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ARHGEF7Q14155 803 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 DCAF4L1Q3SXM0 396 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 LLGL2Q6P1M3 1020 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 TBCKQ8TEA7 893 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 CFAP36Q96G28 342 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 GPR20Q99678 358 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 CYP4F11Q9HBI6 524 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 TMEM260Q9NX78 707 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 STAP1Q9ULZ2 295 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 TRIOBPQ9H2D6 2365 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ABCA6Q8N139 1617 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PGK2P07205 417 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ODC1P11926 461 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 LRMPQ12912 555 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 IQCB1Q15051 598 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 FAM110CQ1W6H9 321 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PRR23CQ6ZRP0 262 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ACRBPQ8NEB7 543 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 AK8Q96MA6 479 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 TINF2Q9BSI4 451 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 MIR1-1HGQ9H1L0 117 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 NRXN1Q9ULB1 1477 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PITPNM2Q9BZ72 1349 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 M0QYT0 321 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 SLC27A2O14975 620 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 TGFB3P10600 412 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ABCB4P21439 1286 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 UBXN2BQ14CS0 331 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF280DQ6N043 979 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ARHGAP18Q8N392 663 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 RSAD2Q8WXG1 361 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 CENPKQ9BS16 269 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 RNF26Q9BY78 433 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PRMT7Q9NVM4 692 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 UXTQ9UBK9 157 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PCDHA4Q9UN74 947 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 H3BRB1 525 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 COPB1P53618 953 aaKnown RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PEX6Q13608 980 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 SV2CQ496J9 727 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 DSG4Q86SJ6 1040 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 DCUN1D1Q96GG9 259 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ZFP91Q96JP5 570 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF668Q96K58 619 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 C11orf84Q9BUA3 381 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 TUT1Q9H6E5 874 aaKnown RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 NCOA5Q9HCD5 579 aaKnown RBP5.4□□□□□ -1.55
SCN1A-218ENST00000640036 TRPM5Q9NZQ8 1165 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 NYAP2Q9P242 653 aa5.4□□□□□ -1.55
SCN1A-218ENST00000640036 PNMA6EA0A0J9YXQ4 647 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 THAP12O43422 761 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 VIL1P09327 827 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 GCKP35557 465 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TEAD4Q15561 434 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TIGD5Q53EQ6 642 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 LGSNQ5TDP6 509 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 FOXR1Q6PIV2 292 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CXCL17Q6UXB2 119 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CCDC84Q86UT8 332 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 SMAP1Q8IYB5 467 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 MAIP1Q8WWC4 291 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PBXIP1Q96AQ6 731 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 EAF2Q96CJ1 260 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 BAZ2BQ9UIF8 2168 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 KIF1AQ12756 1690 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 POLR2DO15514 142 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 MYBL2P10244 700 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PSMA4P25789 261 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PDCD2Q16342 344 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF699Q32M78 642 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TMTC4Q5T4D3 741 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 SSH3Q8TE77 659 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 ATP2A3Q93084 1043 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 MAN1C1Q9NR34 630 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms