RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RNF20Q5VTR2 975 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 EFCAB12Q6NXP0 572 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 ECHDC2Q86YB7 292 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 ZNF713Q8N859 430 aaPredicted RBP17■□□□□ 0.31
SYNE2-228ENST00000639659 RIPOR3Q96MK2 946 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 GLT8D2Q9H1C3 349 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 SMOC2Q9H3U7 446 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 POMKQ9H5K3 350 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 CEP131Q9UPN4 1083 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 HCFC2Q9Y5Z7 792 aa17■□□□□ 0.31
SYNE2-228ENST00000639659 IGLV3-22A0A075B6J6 115 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 C2CD4DB7Z1M9 353 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 CHMP2AO43633 222 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 TMOD1P28289 359 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 FAM189BP81408 668 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 SETQ01105 290 aaPredicted RBP16.99■□□□□ 0.31
SYNE2-228ENST00000639659 FUT2Q10981 343 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 MTMR3Q13615 1198 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 PRR16Q569H4 304 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 CLLU1OSQ5K130 101 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 ZNF746Q6NUN9 644 aaPredicted RBP16.99■□□□□ 0.31
SYNE2-228ENST00000639659 TMEM184AQ6ZMB5 413 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 NLRP7Q8WX94 980 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 TBC1D22BQ9NU19 505 aa16.99■□□□□ 0.31
SYNE2-228ENST00000639659 MAFBQ9Y5Q3 323 aaPredicted RBP16.99■□□□□ 0.31
SYNE2-228ENST00000639659 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.98■□□□□ 0.31
SYNE2-228ENST00000639659 SPDYE4A6NLX3 237 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 ADAMTS3O15072 1205 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 BRD1O95696 1058 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 ASGR2P07307 311 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 CDC27P30260 824 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 KCNC3Q14003 757 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 LONRF3Q496Y0 759 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 SMAP1Q8IYB5 467 aaPredicted RBP16.98■□□□□ 0.31
SYNE2-228ENST00000639659 C12orf76Q8N812 135 aaPredicted RBP16.98■□□□□ 0.31
SYNE2-228ENST00000639659 RASGRP4Q8TDF6 673 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 AUTS2Q8WXX7 1259 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 FAM167AQ96KS9 214 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 IRF2BPLQ9H1B7 796 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 MFSD1Q9H3U5 465 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 SORCS3Q9UPU3 1222 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 PCDHA10Q9Y5I2 948 aa16.98■□□□□ 0.31
SYNE2-228ENST00000639659 USP34Q70CQ2 3546 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 C2orf71A6NGG8 1288 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 MAGEB2O15479 319 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 ZC3H11AO75152 810 aaKnown RBP eCLIP16.97■□□□□ 0.31
SYNE2-228ENST00000639659 CSDE1O75534 798 aaKnown RBP16.97■□□□□ 0.31
SYNE2-228ENST00000639659 EIF4BP23588 611 aaKnown RBP16.97■□□□□ 0.31
SYNE2-228ENST00000639659 PRKCEQ02156 737 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 KANK3Q6NY19 840 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 FAM43BQ6ZT52 329 aaPredicted RBP16.97■□□□□ 0.31
SYNE2-228ENST00000639659 REXO1Q8N1G1 1221 aaKnown RBP16.97■□□□□ 0.31
SYNE2-228ENST00000639659 SLC39A11Q8N1S5 342 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 TDRD5Q8NAT2 981 aaKnown RBP16.97■□□□□ 0.31
SYNE2-228ENST00000639659 TMEM169Q96HH4 297 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 ADAMTS10Q9H324 1103 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 C6orf50Q9HD87 102 aa16.97■□□□□ 0.31
SYNE2-228ENST00000639659 DBR1Q9UK59 544 aaKnown RBP16.97■□□□□ 0.31
SYNE2-228ENST00000639659 WDR64B1ANS9 1081 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 CLASP2O75122 1294 aaKnown RBP16.96■□□□□ 0.31
SYNE2-228ENST00000639659 CXCL14O95715 111 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 OATP04181 439 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 CYP3A4P08684 503 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 ALDH7A1P49419 539 aaKnown RBP16.96■□□□□ 0.31
SYNE2-228ENST00000639659 BMS1Q14692 1282 aaKnown RBP16.96■□□□□ 0.31
SYNE2-228ENST00000639659 PFKFB3Q16875 520 aaPredicted RBP16.96■□□□□ 0.31
SYNE2-228ENST00000639659 DHX32Q7L7V1 743 aaKnown RBP16.96■□□□□ 0.31
SYNE2-228ENST00000639659 TEX2Q8IWB9 1127 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 MRPL43Q8N983 215 aaKnown RBP16.96■□□□□ 0.31
SYNE2-228ENST00000639659 NECTIN4Q96NY8 510 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 MRPL9Q9BYD2 267 aaKnown RBP16.96■□□□□ 0.31
SYNE2-228ENST00000639659 ADAM7Q9H2U9 754 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 INPP5FQ9Y2H2 1132 aa16.96■□□□□ 0.31
SYNE2-228ENST00000639659 ZFHX2Q9C0A1 2572 aaPredicted RBP16.95■□□□□ 0.3
SYNE2-228ENST00000639659 MYO10Q9HD67 2058 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 CFAP54Q96N23 3096 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 GALR2O43603 387 aaPredicted RBP16.95■□□□□ 0.3
SYNE2-228ENST00000639659 ADD1P35611 737 aaKnown RBP16.95■□□□□ 0.3
SYNE2-228ENST00000639659 MTHFRP42898 656 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 GPC3P51654 580 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 BCAR1P56945 870 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 ITIH3Q06033 890 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 TBC1D8BQ0IIM8 1120 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 UGCGQ16739 394 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 ADCK5Q3MIX3 580 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 UBALD2Q8IYN6 164 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 VPS52Q8N1B4 723 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 TMEM105Q8N8V8 129 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 CCDC12Q8WUD4 166 aaPredicted RBP16.95■□□□□ 0.3
SYNE2-228ENST00000639659 LPPQ93052 612 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 GBP3Q9H0R5 595 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 DISC1Q9NRI5 854 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 NRBP2Q9NSY0 501 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 FAM217BQ9NTX9 383 aaPredicted RBP16.95■□□□□ 0.3
SYNE2-228ENST00000639659 LIMD1Q9UGP4 676 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 SEPT9Q9UHD8 586 aaPredicted RBP16.95■□□□□ 0.3
SYNE2-228ENST00000639659 WDR81Q562E7 1941 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 PLXNA3P51805 1871 aa16.95■□□□□ 0.3
SYNE2-228ENST00000639659 ZNF862O60290 1169 aa16.94■□□□□ 0.3
SYNE2-228ENST00000639659 DARSP14868 501 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms