RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 C1orf210Q8IVY1 113 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 VPS52Q8N1B4 723 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 PIBF1Q8WXW3 757 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 AUTS2Q8WXX7 1259 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 MAP4K1Q92918 833 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 OSMRQ99650 979 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 TBC1D17Q9HA65 648 aa18.62■□□□□ 0.57
CLN3-264ENST00000637985 C2orf16Q68DN1 1984 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 RFX1P22670 979 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 SLC26A2P50443 739 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 KIZQ2M2Z5 673 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 LETM2Q2VYF4 491 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 PHLDB3Q6NSJ2 640 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 RALYLQ86SE5 291 aaKnown RBP18.61■□□□□ 0.57
CLN3-264ENST00000637985 ECHDC2Q86YB7 292 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 TMEM87AQ8NBN3 555 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 NCOA7Q8NI08 942 aa18.61■□□□□ 0.57
CLN3-264ENST00000637985 ERICH2A1L162 156 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 NT5C1B-RDH14C9J2C7 533 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 E7EWF7 191 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 HBP1O60381 514 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 GPR32O75388 356 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 DCNP07585 359 aaKnown RBP18.6■□□□□ 0.57
CLN3-264ENST00000637985 CTSAP10619 480 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 ALDH7A1P49419 539 aaKnown RBP18.6■□□□□ 0.57
CLN3-264ENST00000637985 METAP2P50579 478 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLN3-264ENST00000637985 POLGP54098 1239 aaPredicted RBP18.6■□□□□ 0.57
CLN3-264ENST00000637985 BCAR1P56945 870 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 SART3Q15020 963 aaKnown RBP18.6■□□□□ 0.57
CLN3-264ENST00000637985 SPECC1Q5M775 1068 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 RSAD2Q8WXG1 361 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 TMEM169Q96HH4 297 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 SENP2Q9HC62 589 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 CA14Q9ULX7 337 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 SIT1Q9Y3P8 196 aa18.6■□□□□ 0.57
CLN3-264ENST00000637985 NFASCO94856 1347 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 IGKV6D-21A0A0A0MT36 114 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 IFIT3O14879 490 aaKnown RBP18.59■□□□□ 0.57
CLN3-264ENST00000637985 N4BP1O75113 896 aaKnown RBP18.59■□□□□ 0.57
CLN3-264ENST00000637985 ATG7O95352 703 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 C15orf39Q6ZRI6 1047 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 PPFIBP1Q86W92 1011 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 TMEM173Q86WV6 379 aaPredicted RBP18.59■□□□□ 0.57
CLN3-264ENST00000637985 MAML2Q8IZL2 1156 aaPredicted RBP18.59■□□□□ 0.57
CLN3-264ENST00000637985 SLC44A3Q8N4M1 653 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 GPR161Q8N6U8 529 aaKnown RBP18.59■□□□□ 0.57
CLN3-264ENST00000637985 PPP1R16BQ96T49 567 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 KCNH7Q9NS40 1196 aa18.59■□□□□ 0.57
CLN3-264ENST00000637985 COL1A2P08123 1366 aa18.58■□□□□ 0.57
CLN3-264ENST00000637985 ZBTB42B2RXF5 422 aa18.58■□□□□ 0.56
CLN3-264ENST00000637985 KINO60870 393 aaKnown RBP18.58■□□□□ 0.56
CLN3-264ENST00000637985 SRFP11831 508 aa18.58■□□□□ 0.56
CLN3-264ENST00000637985 WTAPQ15007 396 aa18.58■□□□□ 0.56
CLN3-264ENST00000637985 NONOQ15233 471 aaKnown RBP eCLIP18.58■□□□□ 0.56
CLN3-264ENST00000637985 VARS2Q5ST30 1063 aaKnown RBP18.58■□□□□ 0.56
CLN3-264ENST00000637985 CENPQQ7L2Z9 268 aaPredicted RBP18.58■□□□□ 0.56
CLN3-264ENST00000637985 DDX53Q86TM3 631 aaKnown RBP18.58■□□□□ 0.56
CLN3-264ENST00000637985 ZNF598Q86UK7 904 aaKnown RBP18.58■□□□□ 0.56
CLN3-264ENST00000637985 BORCS6Q96GS4 357 aa18.58■□□□□ 0.56
CLN3-264ENST00000637985 PSTPIP2Q9H939 334 aa18.58■□□□□ 0.56
CLN3-264ENST00000637985 RBM8AQ9Y5S9 174 aaKnown RBP18.58■□□□□ 0.56
CLN3-264ENST00000637985 POTEMA6NI47 508 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 ZSCAN20P17040 1043 aaPredicted RBP18.57■□□□□ 0.56
CLN3-264ENST00000637985 ZNF484Q5JVG2 852 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 POTEGQ6S5H5 508 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 RNF169Q8NCN4 708 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 HELQQ8TDG4 1101 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 RRP36Q96EU6 259 aaKnown RBP18.57■□□□□ 0.56
CLN3-264ENST00000637985 SDF4Q9BRK5 362 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 SPZ1Q9BXG8 430 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 MRPL9Q9BYD2 267 aaKnown RBP18.57■□□□□ 0.56
CLN3-264ENST00000637985 NCDNQ9UBB6 729 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 EPS15L1Q9UBC2 864 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 ATRXP46100 2492 aa18.57■□□□□ 0.56
CLN3-264ENST00000637985 A0A0U1RQF3 1178 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 PRR5-ARHGAP8B1AHC4 643 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 C22orf31O95567 290 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 VTNP04004 478 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 ADRB1P08588 477 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 GLULP15104 373 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 ARHGAP8P85298 464 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 GPR152Q8TDT2 470 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 NXPE3Q969Y0 559 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 IGSF21Q96ID5 467 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 MXRA8Q9BRK3 442 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 MTA3Q9BTC8 594 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 TAF6LQ9Y6J9 622 aa18.56■□□□□ 0.56
CLN3-264ENST00000637985 SMARCA1P28370 1054 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 CLCN4P51793 760 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 ITGB3BPQ13352 177 aaPredicted RBP18.55■□□□□ 0.56
CLN3-264ENST00000637985 PTPN14Q15678 1187 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 ZNF528Q3MIS6 628 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 MB21D2Q8IYB1 491 aaPredicted RBP18.55■□□□□ 0.56
CLN3-264ENST00000637985 ESYT1Q9BSJ8 1104 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 RTKNQ9BST9 563 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 LSG1Q9H089 658 aaKnown RBP18.55■□□□□ 0.56
CLN3-264ENST00000637985 ARHGEF3Q9NR81 526 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 CDV3Q9UKY7 258 aaKnown RBP18.55■□□□□ 0.56
CLN3-264ENST00000637985 PCDHA6Q9UN73 950 aa18.55■□□□□ 0.56
CLN3-264ENST00000637985 PCDHA8Q9Y5H6 950 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms