RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PTPRFP10586 1907 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 CLCN6P51797 869 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 PEX3P56589 373 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 KLHL30Q0D2K2 578 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 GJB7Q6PEY0 223 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 ANO5Q75V66 913 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 TRAPPC11Q7Z392 1133 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 MKNK1Q9BUB5 465 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 PCIF1Q9H4Z3 704 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 SIX2Q9NPC8 291 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 CSADQ9Y600 493 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 CAPN6Q9Y6Q1 641 aa17.11■□□□□ 0.33
CLN3-251ENST00000636853 LCTP09848 1927 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 MAFGO15525 162 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 EXOC3O60645 756 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 SRGAP2O75044 1071 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 MOCS3O95396 460 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 TRIM49P0CI25 452 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 TRIM49CP0CI26 452 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 WHAMMP3Q1A5X7 153 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 FAM102BQ5T8I3 360 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 RABGGTAQ92696 567 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 SPAG5Q96R06 1193 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.1■□□□□ 0.33
CLN3-251ENST00000636853 ZNF446Q9NWS9 450 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 FAM53CQ9NYF3 392 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 MYH10P35580 1976 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 MYPNQ86TC9 1320 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 SLC16A4O15374 487 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 ZNF862O60290 1169 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 FSTL1Q12841 308 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 GPR161Q8N6U8 529 aaKnown RBP17.1■□□□□ 0.33
CLN3-251ENST00000636853 GOLGA5Q8TBA6 731 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 DRC1Q96MC2 740 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 SENP7Q9BQF6 1050 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 ANKEF1Q9NU02 776 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 SALL4Q9UJQ4 1053 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 OTOFQ9HC10 1997 aa17.1■□□□□ 0.33
CLN3-251ENST00000636853 RBAK-RBAKDNI3L0D1 243 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 MAPTP10636 758 aaKnown RBP17.09■□□□□ 0.33
CLN3-251ENST00000636853 CNTN2Q02246 1040 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 PAPD7Q5XG87 772 aaKnown RBP17.09■□□□□ 0.33
CLN3-251ENST00000636853 SWSAP1Q6NVH7 229 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 GADL1Q6ZQY3 521 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 HAUS6Q7Z4H7 955 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 IRF2BP2Q7Z5L9 587 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 RDM1Q8NG50 284 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 ACCSQ96QU6 501 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 ELP3Q9H9T3 547 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 BTBD7Q9P203 1132 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 ADAMTS1Q9UHI8 967 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 SAR1BQ9Y6B6 198 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 A0A087X0T9 212 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 FAM228BP0C875 321 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 FMO5P49326 533 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 SOX10P56693 466 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 CBWD6Q4V339 395 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 CBWD3Q5JTY5 395 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 CBWD5Q5RIA9 395 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 CBWD1Q9BRT8 395 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 TMEM206Q9H813 350 aa17.09■□□□□ 0.33
CLN3-251ENST00000636853 JPH1Q9HDC5 661 aaPredicted RBP17.09■□□□□ 0.33
CLN3-251ENST00000636853 GTPBP10A4D1E9 387 aaKnown RBP17.08■□□□□ 0.33
CLN3-251ENST00000636853 PJA2O43164 708 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 ALCAMQ13740 583 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 LBX2Q6XYB7 198 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 MOB2Q70IA6 237 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 SLC9A9Q8IVB4 645 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 ANKRD35Q8N283 1001 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 CLMNQ96JQ2 1002 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 KIFC3Q9BVG8 833 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 PARD6BQ9BYG5 372 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 SLC9A2Q9UBY0 812 aa17.08■□□□□ 0.33
CLN3-251ENST00000636853 CTAGE15A4D2H0 777 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 CCDC169A6NNP5 214 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 SPATA31C2B4DYI2 1134 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 IRF6O14896 467 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 TACC1O75410 805 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 CTAGE8P0CG41 777 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 PNMA6AP0CW24 399 aaPredicted RBP17.08■□□□□ 0.32
CLN3-251ENST00000636853 GTF2BQ00403 316 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 PTK2Q05397 1052 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 BFSP1Q12934 665 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 SLC18A3Q16572 532 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 IQCEQ6IPM2 695 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 CTAGE6Q86UF2 777 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 CTAGE4Q8IX94 777 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 ZSWIM2Q8NEG5 633 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 TRIM58Q8NG06 486 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 OTUD5Q96G74 571 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 CAPZA3Q96KX2 299 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 CEP170P1Q96L14 293 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 TIPINQ9BVW5 301 aa17.08■□□□□ 0.32
CLN3-251ENST00000636853 BUB1O43683 1085 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 STBD1O95210 358 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 PSAPP07602 524 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 YBX3P16989 372 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLN3-251ENST00000636853 ACTR2P61160 394 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 SP2Q02086 613 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 GNPTABQ3T906 1256 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms