RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 U2AF1L4Q8WU68 220 aaKnown RBP22.78■■□□□ 1.24
CLN3-245ENST00000636172 JPH2Q9BR39 696 aaPredicted RBP22.78■■□□□ 1.24
CLN3-245ENST00000636172 POLR3FQ9H1D9 316 aaPredicted RBP22.78■■□□□ 1.24
CLN3-245ENST00000636172 A0A1W2PQ45 241 aaPredicted RBP22.77■■□□□ 1.24
CLN3-245ENST00000636172 A0A1W2PQY0 241 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 GAS2O43903 313 aaKnown RBP22.77■■□□□ 1.24
CLN3-245ENST00000636172 SGPL1O95470 568 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 CCDC192P0DO97 292 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 ARL2P36404 184 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 ADAM17P78536 824 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 STX1AQ16623 288 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 DPCR1Q3MIW9 517 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 ZNF658Q5TYW1 1059 aaPredicted RBP22.77■■□□□ 1.24
CLN3-245ENST00000636172 MYCT1Q8N699 235 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 LINC01465Q8N7H1 131 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 SUGCTQ9HAC7 445 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 PCDHA2Q9Y5H9 948 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 DNAH12Q6ZR08 3092 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 TRIP12Q14669 1992 aaPredicted RBP22.77■■□□□ 1.24
CLN3-245ENST00000636172 MBLAC1A4D2B0 266 aaPredicted RBP22.77■■□□□ 1.24
CLN3-245ENST00000636172 PLS3P13797 630 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 RTP1P59025 263 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 STK4Q13043 487 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 FAM26FQ5R3K3 315 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 EFCAB12Q6NXP0 572 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 LRSAM1Q6UWE0 723 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 SMYD4Q8IYR2 804 aaPredicted RBP22.77■■□□□ 1.24
CLN3-245ENST00000636172 METTL13Q8N6R0 699 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 RETREG2Q8NC44 543 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 BSNDQ8WZ55 320 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 GLT1D1Q96MS3 346 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 TBC1D7Q9P0N9 293 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 SEL1LQ9UBV2 794 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 GTF2IRD1Q9UHL9 959 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 GDAQ9Y2T3 454 aa22.77■■□□□ 1.24
CLN3-245ENST00000636172 C17orf102A2RUQ5 167 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 CLCN3P51790 818 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 ZNF200P98182 395 aaPredicted RBP22.76■■□□□ 1.23
CLN3-245ENST00000636172 PSMD2Q13200 908 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 ODR4Q5SWX8 454 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 IER5Q5VY09 327 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 NFRKBQ6P4R8 1299 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 SESTD1Q86VW0 696 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 KIAA0895Q8NCT3 520 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 ASAP3Q8TDY4 903 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 TCP11Q8WWU5 503 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 VTI1AQ96AJ9 217 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 FIZ1Q96SL8 496 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 FGFBP2Q9BYJ0 223 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 SLC39A2Q9NP94 309 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 OLFML3Q9NRN5 406 aa22.76■■□□□ 1.23
CLN3-245ENST00000636172 ITGA7Q13683 1181 aa22.75■■□□□ 1.23
CLN3-245ENST00000636172 FAM47CQ5HY64 1035 aa22.75■■□□□ 1.23
CLN3-245ENST00000636172 GLIS3Q8NEA6 775 aa22.75■■□□□ 1.23
CLN3-245ENST00000636172 C17orf75Q9HAS0 396 aa22.75■■□□□ 1.23
CLN3-245ENST00000636172 ANO10Q9NW15 660 aa22.75■■□□□ 1.23
CLN3-245ENST00000636172 LARSQ9P2J5 1176 aaKnown RBP22.75■■□□□ 1.23
CLN3-245ENST00000636172 TREHO43280 583 aa22.74■■□□□ 1.23
CLN3-245ENST00000636172 TFRCP02786 760 aaKnown RBP22.74■■□□□ 1.23
CLN3-245ENST00000636172 GNAT1P11488 350 aa22.74■■□□□ 1.23
CLN3-245ENST00000636172 GLRA2P23416 452 aa22.74■■□□□ 1.23
CLN3-245ENST00000636172 GJA8P48165 433 aa22.74■■□□□ 1.23
CLN3-245ENST00000636172 MNX1P50219 401 aaPredicted RBP22.74■■□□□ 1.23
CLN3-245ENST00000636172 PEX3P56589 373 aa22.74■■□□□ 1.23
CLN3-245ENST00000636172 GDF6Q6KF10 455 aaPredicted RBP22.74■■□□□ 1.23
CLN3-245ENST00000636172 PSPC1Q8WXF1 523 aaKnown RBP22.74■■□□□ 1.23
CLN3-245ENST00000636172 SUCLA2Q9P2R7 463 aaPredicted RBP22.74■■□□□ 1.23
CLN3-245ENST00000636172 NPTX2P47972 431 aa22.73■■□□□ 1.23
CLN3-245ENST00000636172 DNM2P50570 870 aa22.73■■□□□ 1.23
CLN3-245ENST00000636172 CASP5P51878 434 aa22.73■■□□□ 1.23
CLN3-245ENST00000636172 RUFY4Q6ZNE9 571 aa22.73■■□□□ 1.23
CLN3-245ENST00000636172 FAM178BQ8IXR5 827 aa22.73■■□□□ 1.23
CLN3-245ENST00000636172 PRPF31Q8WWY3 499 aaKnown RBP22.73■■□□□ 1.23
CLN3-245ENST00000636172 GTPBP4Q9BZE4 634 aaKnown RBP22.73■■□□□ 1.23
CLN3-245ENST00000636172 MRPL44Q9H9J2 332 aaKnown RBP22.73■■□□□ 1.23
CLN3-245ENST00000636172 STARD7Q9NQZ5 370 aa22.73■■□□□ 1.23
CLN3-245ENST00000636172 CD44P16070 742 aaKnown RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 NMT1P30419 496 aaKnown RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 DMP1Q13316 513 aaPredicted RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 ANO6Q4KMQ2 910 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 C11orf57Q6ZUT1 292 aaPredicted RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 KIAA0319LQ8IZA0 1049 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 MLKLQ8NB16 471 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 SPIRE2Q8WWL2 714 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 IFT74Q96LB3 600 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 DNAJC25Q9H1X3 360 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 KIAA0100Q14667 2235 aaKnown RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 A0A0U1RQG5 324 aaPredicted RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 SMIM35A0A1B0GVV1 85 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 PPP1R3GB7ZBB8 358 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 MYBP10242 640 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 MAPTP10636 758 aaKnown RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 CYP2C9P11712 490 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 TMOD1P28289 359 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 PRCPP42785 496 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 PTPN11Q06124 597 aaPredicted RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 LAMTOR4Q0VGL1 99 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 COBLL1Q53SF7 1204 aa22.72■■□□□ 1.23
CLN3-245ENST00000636172 EPM2AIP1Q7L775 607 aaPredicted RBP22.72■■□□□ 1.23
CLN3-245ENST00000636172 KSR1Q8IVT5 923 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms