RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 KRI1Q8N9T8 703 aaKnown RBP20.15■□□□□ 0.82
CLN3-239ENST00000628023 ZNF579Q8NAF0 562 aaKnown RBP20.15■□□□□ 0.82
CLN3-239ENST00000628023 LINC00301Q8NCQ3 95 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 PPP1R16BQ96T49 567 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 FBXO2Q9UK22 296 aaPredicted RBP20.15■□□□□ 0.82
CLN3-239ENST00000628023 GINS2Q9Y248 185 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 SRPRBQ9Y5M8 271 aaKnown RBP20.15■□□□□ 0.82
CLN3-239ENST00000628023 CDY2AQ9Y6F7 541 aa20.15■□□□□ 0.82
CLN3-239ENST00000628023 ARHGEF35A5YM69 484 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 GTPBP6O43824 516 aaPredicted RBP20.14■□□□□ 0.81
CLN3-239ENST00000628023 VTNP04004 478 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 TXLNAP40222 546 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 RARRES1P49788 294 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 MRPS5P82675 430 aaKnown RBP20.14■□□□□ 0.81
CLN3-239ENST00000628023 EMC2Q15006 297 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 CALML4Q96GE6 196 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 SCLT1Q96NL6 688 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 ZBED2Q9BTP6 218 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 NT5C3AQ9H0P0 336 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 CSRNP2Q9H175 543 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 PRDM6Q9NQX0 595 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 TRPV2Q9Y5S1 764 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 TTC28Q96AY4 2481 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 EVPLQ92817 2033 aa20.14■□□□□ 0.81
CLN3-239ENST00000628023 USO1O60763 962 aaKnown RBP20.13■□□□□ 0.81
CLN3-239ENST00000628023 EFCAB14O75071 495 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 CHRNA1P02708 482 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 XRCC6P12956 609 aaKnown RBP eCLIP20.13■□□□□ 0.81
CLN3-239ENST00000628023 KRT85P78386 507 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 ECM1Q16610 540 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 FAM26DQ5JW98 314 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 SPECC1Q5M775 1068 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 CNKSR3Q6P9H4 555 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 TRAF7Q6Q0C0 670 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 MICALL1Q8N3F8 863 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 KCNG4Q8TDN1 519 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 CLIC6Q96NY7 704 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 ASB2Q96Q27 587 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 CEP89Q96ST8 783 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 PLIN2Q99541 437 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 MTRQ99707 1265 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 MMTAG2Q9BU76 263 aaKnown RBP20.13■□□□□ 0.81
CLN3-239ENST00000628023 ATP6V0A4Q9HBG4 840 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 DBR1Q9UK59 544 aaKnown RBP20.13■□□□□ 0.81
CLN3-239ENST00000628023 DNM3Q9UQ16 869 aa20.13■□□□□ 0.81
CLN3-239ENST00000628023 MORC2Q9Y6X9 1032 aaPredicted RBP20.13■□□□□ 0.81
CLN3-239ENST00000628023 ARID2Q68CP9 1835 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 SLC26A4O43511 780 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 TLL1O43897 1013 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 GAS2O43903 313 aaKnown RBP20.12■□□□□ 0.81
CLN3-239ENST00000628023 NBNO60934 754 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 PPP6R2O75170 966 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 DGAT1O75907 488 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 GHRP10912 638 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 MGAT3Q09327 533 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 KIZQ2M2Z5 673 aa20.12■□□□□ 0.81
CLN3-239ENST00000628023 CELF4Q9BZC1 486 aaKnown RBP20.12■□□□□ 0.81
CLN3-239ENST00000628023 DHX33Q9H6R0 707 aaKnown RBP20.12■□□□□ 0.81
CLN3-239ENST00000628023 SUCLA2Q9P2R7 463 aaPredicted RBP20.12■□□□□ 0.81
CLN3-239ENST00000628023 TET1Q8NFU7 2136 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 IGKV6-21A0A0C4DH24 114 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 ABHD14A-ACY1A0A1B0GW23 586 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 ME1P48163 572 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 IKBKEQ14164 716 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 MBTPS1Q14703 1052 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 LINC01465Q8N7H1 131 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 TCP11Q8WWU5 503 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 TMEM143Q96AN5 459 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 BHMT2Q9H2M3 363 aa20.11■□□□□ 0.81
CLN3-239ENST00000628023 VCANP13611 3396 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 E9PMD0 336 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 CXCL10P02778 98 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 SSBP05455 408 aaKnown RBP eCLIP20.1■□□□□ 0.81
CLN3-239ENST00000628023 DDIT3P35638 169 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 NLRP11P59045 1033 aaKnown RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 WDR5P61964 334 aaKnown RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 GRB10Q13322 594 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 DRP2Q13474 957 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 KARSQ15046 597 aaKnown RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 SKIV2LQ15477 1246 aaKnown RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 HYIQ5T013 277 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 PADI6Q6TGC4 694 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 RHPN2Q8IUC4 686 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 ZNF710Q8N1W2 664 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 NLRP7Q8WX94 980 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 PSPC1Q8WXF1 523 aaKnown RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 ARNTL2Q8WYA1 636 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 SEPT8Q92599 483 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 ZNF668Q96K58 619 aaPredicted RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 OSMRQ99650 979 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 CERS4Q9HA82 394 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 TSHZ2Q9NRE2 1034 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 CCDC39Q9UFE4 941 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 CIZ1Q9ULV3 898 aaPredicted RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 RBM19Q9Y4C8 960 aaKnown RBP20.1■□□□□ 0.81
CLN3-239ENST00000628023 CHD7Q9P2D1 2997 aa20.1■□□□□ 0.81
CLN3-239ENST00000628023 TNFRSF10AO00220 468 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 CUTAO60888 179 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 EYA4O95677 639 aa20.09■□□□□ 0.81
CLN3-239ENST00000628023 POU3F3P20264 500 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms