RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 VAV1P15498 845 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 METAP2P50579 478 aaKnown RBP eCLIP8.52□□□□□ -1.05
VPS11-209ENST00000622309 RASSF2P50749 326 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 HDAC4P56524 1084 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 RTP1P59025 263 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 CYLC2Q14093 348 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 RILPL1Q5EBL4 403 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 CCDC174Q6PII3 467 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 TAOK1Q7L7X3 1001 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 MYOCDQ8IZQ8 938 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 PHKBQ93100 1093 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 NAP1L3Q99457 506 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 STRN4Q9NRL3 753 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 ZNF330Q9Y3S2 320 aaPredicted RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 DAPK3O43293 454 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 GJB6O95452 261 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 AFPP02771 609 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 LYNP07948 512 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 TCF3P15923 654 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 EEF1GP26641 437 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 EIF4A3P38919 411 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 EHHADHQ08426 723 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 USP38Q8NB14 1042 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 VPS37AQ8NEZ2 397 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 SH3TC2Q8TF17 1288 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 NAT14Q8WUY8 206 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 BLZF1Q9H2G9 400 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 LRMDAQ9H2I8 198 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 AZI2Q9H6S1 392 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 TRPV5Q9NQA5 729 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 BTBD7Q9P203 1132 aa8.52□□□□□ -1.05
VPS11-209ENST00000622309 DDX25Q9UHL0 483 aaKnown RBP8.52□□□□□ -1.05
VPS11-209ENST00000622309 MYH7P12883 1935 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 HTR3EA5X5Y0 456 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 OAS1P00973 400 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 CYP1A1P04798 512 aaPredicted RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 HSPD1P10809 573 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 PYGMP11217 842 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 GM2AP17900 193 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 RASA1P20936 1047 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 ECHS1P30084 290 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 HAND2P61296 217 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 CDK17Q00537 523 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 SOGA3Q5TF21 947 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 DENND2CQ68D51 928 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 DUS1LQ6P1R4 473 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 RIBC1Q8N443 379 aaPredicted RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 FBXL16Q8N461 479 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 NMD3Q96D46 503 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 CAMKK2Q96RR4 588 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 NEUROG2Q9H2A3 272 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 IL1RAPL1Q9NZN1 696 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 HSFX1Q9UBD0 423 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 SLC45A1Q9Y2W3 748 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 PASKQ96RG2 1323 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 PCDH11XQ9BZA7 1347 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 COL14A1Q05707 1796 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 TNS1Q9HBL0 1735 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 POU5F1Q01860 360 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 ZCWPW2Q504Y3 356 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 MARK2Q7KZI7 788 aaKnown RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 FAM133AQ8N9E0 248 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 FLCNQ8NFG4 579 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 TBC1D16Q8TBP0 767 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 PGM2Q96G03 612 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 ZNF496Q96IT1 587 aaPredicted RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 MAML3Q96JK9 1138 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 ZNF512BQ96KM6 892 aaPredicted RBP8.51□□□□□ -1.05
VPS11-209ENST00000622309 TRIM47Q96LD4 638 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 TMEM237Q96Q45 408 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 BEGAINQ9BUH8 593 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 SPON1Q9HCB6 807 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 SFMBT1Q9UHJ3 866 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 CROTQ9UKG9 612 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 MYH13Q9UKX3 1938 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 SPATA31A5Q5VU36 1347 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 SPATA31A7Q8IWB4 1347 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 NRAPQ86VF7 1730 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 ABCA3Q99758 1704 aa8.51□□□□□ -1.05
VPS11-209ENST00000622309 A6NJR5 290 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 BTBD18B2RXH4 712 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 NDUFB5O43674 189 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 OPHN1O60890 802 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 PALMO75781 387 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 AGTP01019 485 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 MYCP01106 439 aaPredicted RBP8.5□□□□□ -1.05
VPS11-209ENST00000622309 SRGNP10124 158 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 VARSP26640 1264 aaKnown RBP8.5□□□□□ -1.05
VPS11-209ENST00000622309 CDK7P50613 346 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 GALK1P51570 392 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 IFI35P80217 286 aaPredicted RBP8.5□□□□□ -1.05
VPS11-209ENST00000622309 LRRC14Q15048 493 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 RCN1Q15293 331 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 C6orf118Q5T5N4 469 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 PHLDB3Q6NSJ2 640 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 ZNF790Q6PG37 636 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 LRRC74BQ6ZQY2 392 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 PTF1AQ7RTS3 328 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 CROCCP2Q86T23 111 aa8.5□□□□□ -1.05
VPS11-209ENST00000622309 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms