RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 GPC3P51654 580 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 XKR9Q5GH70 373 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 FAM26DQ5JW98 314 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 ZNF697Q5TEC3 545 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 CNKSR3Q6P9H4 555 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 CRIPAKQ8N1N5 446 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 PRPF31Q8WWY3 499 aaKnown RBP6.39□□□□□ -1.39
CPNE3-208ENST00000614678 RABGGTAQ92696 567 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 PANK2Q9BZ23 570 aa6.39□□□□□ -1.39
CPNE3-208ENST00000614678 LINC01553A4QN01 128 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 VWA3AA6NCI4 1184 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 F8W810 466 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 H3BQV1 296 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 K7ELQ4 463 aaPredicted RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 PSMC5P62195 406 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 HMGN5P82970 282 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 SMAD3P84022 425 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 TFF2Q03403 129 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 IKBKEQ14164 716 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 MOXD1Q6UVY6 613 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 RNF169Q8NCN4 708 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 CPB2Q96IY4 423 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 SLC28A3Q9HAS3 691 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 MTMR6Q9Y217 621 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 ADGRA3Q8IWK6 1321 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 SMIM35A0A1B0GVV1 85 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 OR52Z1P0C646 297 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 JAK3P52333 1124 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 NLRP7Q8WX94 980 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 EPSTI1Q96J88 318 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 FAM20AQ96MK3 541 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 ADAM2Q99965 735 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 ZBED2Q9BTP6 218 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 BRMS1Q9HCU9 246 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 TRPV2Q9Y5S1 764 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 IGKV6-21A0A0C4DH24 114 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 P4HBP07237 508 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 DNAJB1P25685 340 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 RARRES1P49788 294 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 DHX8Q14562 1220 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 SAFBQ15424 915 aaKnown RBP eCLIP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 SF3A1Q15459 793 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 TAF2Q6P1X5 1199 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 TOP1MTQ969P6 601 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 NIFKQ9BYG3 293 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 ALG13Q9NP73 1137 aaKnown RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 SUCLA2Q9P2R7 463 aaPredicted RBP6.38□□□□□ -1.39
CPNE3-208ENST00000614678 KIAA1024Q9UPX6 916 aa6.38□□□□□ -1.39
CPNE3-208ENST00000614678 A0A087X0B3 334 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 GNAT1P11488 350 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 ATF7P17544 494 aaPredicted RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 LIG1P18858 919 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 RESTQ13127 1097 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 EPHA7Q15375 998 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 XKR3Q5GH77 459 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 LRRC55Q6ZSA7 311 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 TSHZ1Q6ZSZ6 1077 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 PNMA5Q96PV4 448 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 USP28Q96RU2 1077 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 RNF39Q9H2S5 420 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 ERVK-5Q9HDB9 667 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 ZDHHC9Q9Y397 364 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 KIAA1671Q9BY89 1806 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 COL4A4P53420 1690 aaPredicted RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 RRN3P2A6NIE6 340 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 NT5C1B-RDH14C9J2C7 533 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 RPS6KA5O75582 802 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 SFNP31947 248 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 KCNJ6P48051 423 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 ZNF484Q5JVG2 852 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 TMEM173Q86WV6 379 aaPredicted RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 RUSC1Q9BVN2 902 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 BHMT2Q9H2M3 363 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 DHX33Q9H6R0 707 aaKnown RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 DDX19AQ9NUU7 478 aaKnown RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 MAFO75444 373 aaPredicted RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 GCFC2P16383 781 aaKnown RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 LAMTOR4Q0VGL1 99 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 PAK2Q13177 524 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 EMC2Q15006 297 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 RNF149Q8NC42 400 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 SCLT1Q96NL6 688 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 EIF2AQ9BY44 585 aaKnown RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 CDH22Q9UJ99 828 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 TCHHQ07283 1943 aa6.37□□□□□ -1.39
CPNE3-208ENST00000614678 FNDC1Q4ZHG4 1894 aaPredicted RBP6.37□□□□□ -1.39
CPNE3-208ENST00000614678 FOSL2P15408 326 aa6.36□□□□□ -1.39
CPNE3-208ENST00000614678 GLRA2P23416 452 aa6.36□□□□□ -1.39
CPNE3-208ENST00000614678 HOXA11P31270 313 aaPredicted RBP6.36□□□□□ -1.39
CPNE3-208ENST00000614678 POLGP54098 1239 aaPredicted RBP6.36□□□□□ -1.39
CPNE3-208ENST00000614678 CAPSQ13938 189 aa6.36□□□□□ -1.39
CPNE3-208ENST00000614678 CAMK1Q14012 370 aa6.36□□□□□ -1.39
CPNE3-208ENST00000614678 KARSQ15046 597 aaKnown RBP6.36□□□□□ -1.39
CPNE3-208ENST00000614678 IER5Q5VY09 327 aa6.36□□□□□ -1.39
CPNE3-208ENST00000614678 SEPT8Q92599 483 aa6.36□□□□□ -1.39
CPNE3-208ENST00000614678 STAMQ92783 540 aa6.36□□□□□ -1.39
CPNE3-208ENST00000614678 RC3H2Q9HBD1 1191 aaKnown RBP6.36□□□□□ -1.39
CPNE3-208ENST00000614678 NLRC5Q86WI3 1866 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms