RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ADAMTS10Q9H324 1103 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 ATP6V0A4Q9HBG4 840 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 SH2B1Q9NRF2 756 aaPredicted RBP14.09□□□□□ -0.15
UPF1-203ENST00000594504 DISC1Q9NRI5 854 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 RNF19AQ9NV58 838 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 TCEAL9Q9UHQ7 104 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 MUTYHQ9UIF7 546 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 AKT3Q9Y243 479 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 PCDHB12Q9Y5F1 795 aa14.09□□□□□ -0.15
UPF1-203ENST00000594504 MAGEB2O15479 319 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 DTNBO60941 627 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 CSDE1O75534 798 aaKnown RBP14.08□□□□□ -0.16
UPF1-203ENST00000594504 FGF18O76093 207 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 CSPP1Q1MSJ5 1256 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 RNF135Q8IUD6 432 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 THNSL1Q8IYQ7 743 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 TBCKQ8TEA7 893 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 WASF1Q92558 559 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 CASD1Q96PB1 797 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 SH2D3AQ9BRG2 576 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 UNC45AQ9H3U1 944 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 TLE6Q9H808 572 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 NRBP2Q9NSY0 501 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 TMEM161AQ9NX61 479 aa14.08□□□□□ -0.16
UPF1-203ENST00000594504 ORC3Q9UBD5 711 aaPredicted RBP14.08□□□□□ -0.16
UPF1-203ENST00000594504 TMEM150BA6NC51 233 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 WDR64B1ANS9 1081 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 EYA4O95677 639 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 OATP04181 439 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 XBP1P17861 261 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 PBX3P40426 434 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 USP11P51784 963 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 ST3GAL1Q11201 340 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 DRP2Q13474 957 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 NSUN7Q8NE18 718 aaKnown RBP14.07□□□□□ -0.16
UPF1-203ENST00000594504 VN1R2Q8NFZ6 395 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 SLC5A5Q92911 643 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 PPP2R3CQ969Q6 453 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 AIFM3Q96NN9 605 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 ELAC1Q9H777 363 aaKnown RBP14.07□□□□□ -0.16
UPF1-203ENST00000594504 TLR9Q9NR96 1032 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 AAASQ9NRG9 546 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 CEP131Q9UPN4 1083 aa14.07□□□□□ -0.16
UPF1-203ENST00000594504 ARIH1Q9Y4X5 557 aaPredicted RBP14.07□□□□□ -0.16
UPF1-203ENST00000594504 GAS7O60861 476 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 TDP2O95551 362 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 EIF4BP23588 611 aaKnown RBP14.06□□□□□ -0.16
UPF1-203ENST00000594504 HOXD11P31277 338 aaPredicted RBP14.06□□□□□ -0.16
UPF1-203ENST00000594504 MCM2P49736 904 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 GPC3P51654 580 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 PRKCEQ02156 737 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 COASYQ13057 564 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 LRCH2Q5VUJ6 765 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 PLPP4Q5VZY2 271 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 GALNT17Q6IS24 598 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 CCDC83Q8IWF9 413 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 DAGLBQ8NCG7 672 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 RNF169Q8NCN4 708 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 FAM167AQ96KS9 214 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 MAP7D2Q96T17 732 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 LLPHQ9BRT6 129 aaKnown RBP14.06□□□□□ -0.16
UPF1-203ENST00000594504 TEKT3Q9BXF9 490 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 PCDHA4Q9UN74 947 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 NCOR1O75376 2440 aa14.06□□□□□ -0.16
UPF1-203ENST00000594504 FSCN2O14926 492 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 PSMD10O75832 226 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 STBD1O95210 358 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 FDPSP14324 419 aaKnown RBP14.05□□□□□ -0.16
UPF1-203ENST00000594504 ZSCAN20P17040 1043 aaPredicted RBP14.05□□□□□ -0.16
UPF1-203ENST00000594504 TMOD1P28289 359 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 UBE3AQ05086 875 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 DUSP6Q16828 381 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 MTERF2Q49AM1 385 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 HFE2Q6ZVN8 426 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 MIER3Q7Z3K6 550 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 ECHDC2Q86YB7 292 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 SMRP1Q8NCR6 262 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 RIT2Q99578 217 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 APOL5Q9BWW9 433 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 TMEM117Q9H0C3 514 aa14.05□□□□□ -0.16
UPF1-203ENST00000594504 USP15Q9Y4E8 981 aaPredicted RBP14.05□□□□□ -0.16
UPF1-203ENST00000594504 HIDE1A8MVS5 230 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 M0R2N6 131 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 JAK2O60674 1132 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 DARSP14868 501 aaKnown RBP14.04□□□□□ -0.16
UPF1-203ENST00000594504 LAG3P18627 525 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 TBC1D8BQ0IIM8 1120 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 TARBP2Q15633 366 aaKnown RBP14.04□□□□□ -0.16
UPF1-203ENST00000594504 NPY5RQ15761 445 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 LONRF3Q496Y0 759 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 Q4G0T1 1027 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 CLLU1OSQ5K130 101 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 LLGL2Q6P1M3 1020 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 KCNT2Q6UVM3 1135 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 ALYREFQ86V81 257 aaKnown RBP14.04□□□□□ -0.16
UPF1-203ENST00000594504 BLIDQ8IZY5 108 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 HELQQ8TDG4 1101 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 NLRP7Q8WX94 980 aa14.04□□□□□ -0.16
UPF1-203ENST00000594504 MRPS27Q92552 414 aaKnown RBP14.04□□□□□ -0.16
UPF1-203ENST00000594504 SCLT1Q96NL6 688 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms