RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 CDC42EP1Q00587 391 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 SF3A1Q15459 793 aaKnown RBP16.23■□□□□ 0.19
VRK3-206ENST00000594090 ECM1Q16610 540 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 ODR4Q5SWX8 454 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 FAM173BQ6P4H8 233 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 ZNF410Q86VK4 478 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 TCP11Q8WWU5 503 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 PSPC1Q8WXF1 523 aaKnown RBP16.23■□□□□ 0.19
VRK3-206ENST00000594090 TMEM143Q96AN5 459 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 FAM161BQ96MY7 647 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 TMX1Q9H3N1 280 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 ZSCAN16Q9H4T2 348 aaPredicted RBP16.23■□□□□ 0.19
VRK3-206ENST00000594090 XPNPEP1Q9NQW7 623 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 DBR1Q9UK59 544 aaKnown RBP16.23■□□□□ 0.19
VRK3-206ENST00000594090 ST3GAL5Q9UNP4 418 aa16.23■□□□□ 0.19
VRK3-206ENST00000594090 CDH23Q9H251 3354 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 GPR182O15218 404 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 USO1O60763 962 aaKnown RBP16.22■□□□□ 0.19
VRK3-206ENST00000594090 DGAT1O75907 488 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 CA3P07451 260 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 DARSP14868 501 aaKnown RBP16.22■□□□□ 0.19
VRK3-206ENST00000594090 CDC25AP30304 524 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 KRT79Q5XKE5 535 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 PPP2R2DQ66LE6 453 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 FAM117BQ6P1L5 589 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 KSR1Q8IVT5 923 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 SPRYD3Q8NCJ5 442 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 TOP1MTQ969P6 601 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 NLRP4Q96MN2 994 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 ZBED2Q9BTP6 218 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 MMTAG2Q9BU76 263 aaKnown RBP16.22■□□□□ 0.19
VRK3-206ENST00000594090 TSPYL2Q9H2G4 693 aaPredicted RBP16.22■□□□□ 0.19
VRK3-206ENST00000594090 SEMA6BQ9H3T3 888 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 ZNF576Q9H609 170 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 SLC28A3Q9HAS3 691 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 ATP6V0A4Q9HBG4 840 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 MTMR10Q9NXD2 777 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 COL4A3BPQ9Y5P4 624 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 CLIC4Q9Y696 253 aa16.22■□□□□ 0.19
VRK3-206ENST00000594090 A0A087WZ62 844 aa16.21■□□□□ 0.19
VRK3-206ENST00000594090 ENPP3O14638 875 aa16.21■□□□□ 0.19
VRK3-206ENST00000594090 MGEA5O60502 916 aa16.21■□□□□ 0.19
VRK3-206ENST00000594090 SLC34A2O95436 690 aa16.21■□□□□ 0.19
VRK3-206ENST00000594090 RTN4RL1Q86UN2 441 aaPredicted RBP16.21■□□□□ 0.19
VRK3-206ENST00000594090 PRPF31Q8WWY3 499 aaKnown RBP16.21■□□□□ 0.19
VRK3-206ENST00000594090 FDXACB1Q9BRP7 624 aaPredicted RBP16.21■□□□□ 0.19
VRK3-206ENST00000594090 GCOM2Q9BZD3 368 aaPredicted RBP16.21■□□□□ 0.19
VRK3-206ENST00000594090 DDX19AQ9NUU7 478 aaKnown RBP16.21■□□□□ 0.19
VRK3-206ENST00000594090 COL4A6Q14031 1691 aa16.21■□□□□ 0.19
VRK3-206ENST00000594090 LCHNA4D1U4 455 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 ARHGEF35A5YM69 484 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 ARHGEF15O94989 841 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 UPP2O95045 317 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 PDIA4P13667 645 aaKnown RBP16.2■□□□□ 0.18
VRK3-206ENST00000594090 LAMTOR4Q0VGL1 99 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 PTPAQ15257 358 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 FAM43BQ6ZT52 329 aaPredicted RBP16.2■□□□□ 0.18
VRK3-206ENST00000594090 GUCD1Q96NT3 240 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 RAD9AQ99638 391 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 KIAA1024Q9UPX6 916 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 TTC3P53804 2025 aa16.2■□□□□ 0.18
VRK3-206ENST00000594090 CSDE1O75534 798 aaKnown RBP16.19■□□□□ 0.18
VRK3-206ENST00000594090 FGFR4P22455 802 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 HTRA4P83105 476 aaPredicted RBP16.19■□□□□ 0.18
VRK3-206ENST00000594090 AK8Q96MA6 479 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 USP28Q96RU2 1077 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 ADAM2Q99965 735 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 BHMT2Q9H2M3 363 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 IFT122Q9HBG6 1241 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 INSL6Q9Y581 213 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 DENND3A2RUS2 1198 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 ASAP2O43150 1006 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 SRGAP2CP0DJJ0 459 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 SFPQP23246 707 aaKnown RBP eCLIP16.19■□□□□ 0.18
VRK3-206ENST00000594090 ARL2P36404 184 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 TAP1Q03518 808 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 GRIN1Q05586 938 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 DSC3Q14574 896 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 MXD4Q14582 209 aaPredicted RBP16.19■□□□□ 0.18
VRK3-206ENST00000594090 GRIN2CQ14957 1233 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 HYIQ5T013 277 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 PADI6Q6TGC4 694 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 NPAS4Q8IUM7 802 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 RNF149Q8NC42 400 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 MCPH1Q8NEM0 835 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 YME1L1Q96TA2 773 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 INO80BQ9C086 356 aaPredicted RBP16.19■□□□□ 0.18
VRK3-206ENST00000594090 POLR3FQ9H1D9 316 aaPredicted RBP16.19■□□□□ 0.18
VRK3-206ENST00000594090 RGS18Q9NS28 235 aa16.19■□□□□ 0.18
VRK3-206ENST00000594090 EYA4O95677 639 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 ZSCAN22P10073 491 aaPredicted RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 CYP11B2P19099 503 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 GLRA2P23416 452 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 LONP1P36776 959 aaKnown RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 SARSP49591 514 aaKnown RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 CEBPZQ03701 1054 aaKnown RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 PKP1Q13835 747 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 CAPSQ13938 189 aa16.18■□□□□ 0.18
VRK3-206ENST00000594090 FOXD4L5Q5VV16 416 aaPredicted RBP16.18■□□□□ 0.18
VRK3-206ENST00000594090 MAEAQ7L5Y9 396 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms