RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 PTF1AQ7RTS3 328 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 NAP1L3Q99457 506 aaPredicted RBP16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 ERP44Q9BS26 406 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 TRIM51Q9BSJ1 452 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 STK33Q9BYT3 514 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 KDM4CQ9H3R0 1056 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 PRDM16Q9HAZ2 1276 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 CD248Q9HCU0 757 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 PPP1R9AQ9ULJ8 1098 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 FAM187AA6NFU0 413 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 MEIS1O00470 390 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 GHRP10912 638 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 DRG2P55039 364 aaKnown RBP16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 ARHGAP4P98171 946 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 NFIL3Q16649 462 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 CNBD1Q8NA66 436 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 CCT6BQ92526 530 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 LENG9Q96B70 501 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 XPO6Q96QU8 1125 aaKnown RBP16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 EPB41L4BQ9H329 900 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 ATP8A1Q9Y2Q0 1164 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 TGFB1I1O43294 461 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 IFFO1Q0D2I5 559 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 HOOK3Q86VS8 718 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 OLFML3Q9NRN5 406 aa16.12■□□□□ 0.17
SMARCA4-219ENST00000592604 RSPH10B2B2RC85 870 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 F8W031 263 aaPredicted RBP16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 RSPH10BP0C881 870 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 SCTRP47872 440 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 XRCC4Q13426 336 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CLUL1Q15846 466 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 PREPLQ4J6C6 727 aaPredicted RBP16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 PRR16Q569H4 304 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 WLSQ5T9L3 541 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CYB5D1Q6P9G0 228 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CPLX4Q7Z7G2 160 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CCDC50Q8IVM0 306 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CERKQ8TCT0 537 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 MAGEC3Q8TD91 643 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 RPGRQ92834 1020 aaKnown RBP16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CHMP6Q96FZ7 201 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 SGSM3Q96HU1 749 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 FAM20AQ96MK3 541 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 FAM129AQ9BZQ8 928 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 DAAM1Q9Y4D1 1078 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 PCDHB13Q9Y5F0 798 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 PHF20L1A8MW92 1017 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CLIC2O15247 247 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 DR1Q01658 176 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 PPARDQ03181 441 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CRY2Q49AN0 593 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 GLYCTKQ8IVS8 523 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 KCTD17Q8N5Z5 321 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 PGM2Q96G03 612 aa16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 P2RX7Q99572 595 aaKnown RBP16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 PABPC3Q9H361 631 aaKnown RBP16.11■□□□□ 0.17
SMARCA4-219ENST00000592604 CAND2O75155 1236 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 GCNT3O95395 438 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 RDXP35241 583 aaKnown RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 PSMC2P35998 433 aaKnown RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 KLRC3Q07444 240 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 KCNA1Q09470 495 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 DHX34Q14147 1143 aaKnown RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 PARP9Q8IXQ6 854 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 CTNNBL1Q8WYA6 563 aaPredicted RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 ZNF317Q96PQ6 595 aaPredicted RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 POLR3CQ9BUI4 534 aaPredicted RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 CXorf56Q9H5V9 222 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 POLLQ9UGP5 575 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 GOLGA6L10A0A0M3HER8 536 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 BACH1O14867 736 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 EIF3DO15371 548 aaKnown RBP eCLIP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 DNAJC8O75937 253 aaPredicted RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 EYA4O95677 639 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 GAP43P17677 238 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 SLC15A2Q16348 729 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 KCTD19Q17RG1 926 aaPredicted RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 FMNL3Q8IVF7 1028 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 TBC1D16Q8TBP0 767 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 MKNK1Q9BUB5 465 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 RUSC1Q9BVN2 902 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 TRIM31Q9BZY9 425 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.1■□□□□ 0.171e-6■■■■□ 25.1
SMARCA4-219ENST00000592604 SUGT1Q9Y2Z0 365 aa16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 ZBTB12Q9Y330 459 aaPredicted RBP16.1■□□□□ 0.17
SMARCA4-219ENST00000592604 FRMPD4Q14CM0 1322 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 IGSF9BQ9UPX0 1349 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 TBCAO75347 108 aaKnown RBP16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 MMP13P45452 471 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 DRAP1Q14919 205 aaPredicted RBP16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 SNCBQ16143 134 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 MDM1Q8TC05 714 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 GPR88Q9GZN0 384 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 DNAJC12Q9UKB3 198 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 PNMA2Q9UL42 364 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 PMS2P54278 862 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 KIAA1755Q5JYT7 1200 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 PRR5LQ6MZQ0 368 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 FAM186BQ8IYM0 893 aa16.09■□□□□ 0.17
SMARCA4-219ENST00000592604 MKL1Q969V6 931 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms